Danielle L. Swaney

17.1k total citations · 2 hit papers
65 papers, 4.4k citations indexed

About

Danielle L. Swaney is a scholar working on Molecular Biology, Spectroscopy and Epidemiology. According to data from OpenAlex, Danielle L. Swaney has authored 65 papers receiving a total of 4.4k indexed citations (citations by other indexed papers that have themselves been cited), including 43 papers in Molecular Biology, 18 papers in Spectroscopy and 10 papers in Epidemiology. Recurrent topics in Danielle L. Swaney's work include Advanced Proteomics Techniques and Applications (18 papers), Mass Spectrometry Techniques and Applications (14 papers) and Ubiquitin and proteasome pathways (8 papers). Danielle L. Swaney is often cited by papers focused on Advanced Proteomics Techniques and Applications (18 papers), Mass Spectrometry Techniques and Applications (14 papers) and Ubiquitin and proteasome pathways (8 papers). Danielle L. Swaney collaborates with scholars based in United States, United Kingdom and Canada. Danielle L. Swaney's co-authors include Joshua J. Coon, Craig D. Wenger, Nevan J. Krogan, Graeme C. McAlister, Judit Villén, Pedro Beltrão, Jae C. Schwartz, John E. P. Syka, A. John Rush and Stanley Fields and has published in prestigious journals such as Nature, Science and Cell.

In The Last Decade

Danielle L. Swaney

60 papers receiving 4.4k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation

2013 478 citations Danielle L. Swaney, Pedro Beltrão et al. profile →
The functional landscape of the human phosphoproteome

2019 300 citations David Ochoa, Andrew F. Jarnuczak et al. Nature Biotechnology profile →

Peers

Countries citing papers authored by Danielle L. Swaney

Since Specialization

Citations

This map shows the geographic impact of Danielle L. Swaney's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Danielle L. Swaney with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Danielle L. Swaney more than expected).

Fields of papers citing papers by Danielle L. Swaney

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Danielle L. Swaney. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Danielle L. Swaney. The network helps show where Danielle L. Swaney may publish in the future.

Co-authorship network of co-authors of Danielle L. Swaney

This figure shows the co-authorship network connecting the top 25 collaborators of Danielle L. Swaney. A scholar is included among the top collaborators of Danielle L. Swaney based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Danielle L. Swaney. Danielle L. Swaney is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Selective RNA sequestration in biomolecular condensates directs cell fate transitions 2025 ·Nature Biotechnology ·Patrizia Pessina, (unknown), Junchao Shi, Srikanth Kodali, Eduard Casas, Yingzhi Cui, Alicia Richards, Emily J. Park, Xi Chen, (unknown), (unknown), Erica Stevenson, Nevan J. Krogan, Danielle L. Swaney, Qi-Long Ying, Qi Chen, Justin Brumbaugh, Bruno Di Stefano	1
2	Lysosomal proteomics reveals mechanisms of neuronal APOE4-associated lysosomal dysfunction 2025 ·Autophagy ·Einar Krogsaeter, (unknown), (unknown), Antonio J. Márquez, Alexandra R. Willis, Zeynep Cakir, Erica Stevenson, Gwendolyn Μ. Jang, Antara Rao, Emmy Li, (unknown), A.F. Attili, Timothy S. Chang, Martin Kampmann, Yadong Huang, Nevan J. Krogan, Danielle L. Swaney	0
3	Coupled equilibria of dimerization and lipid binding modulate SARS Cov 2 Orf9b interactions and interferon response 2025 ·eLife ·(unknown), Jyoti Batra, Monita Muralidharan, (unknown), Darpan Anand, (unknown), Kliment A. Verba, Danielle L. Swaney, Nevan J. Krogan, Michael Grabe, James S. Fraser	0
4	Anti-restriction functions of injected phage proteins revealed by peeling back layers of bacterial immunity 2025 ·Nature Communications ·Sukrit Silas, (unknown), Kira S. Makarova, (unknown), (unknown), (unknown), (unknown), Andrea Fossati, Danielle L. Swaney, (unknown), Eugene V. Koonin, Joseph Bondy‐Denomy	1
5	MerlinS13 phosphorylation regulates meningioma Wnt signaling and magnetic resonance imaging features 2024 ·Nature Communications ·Charlotte Eaton, (unknown), Siyuan Liu, (unknown), (unknown), (unknown), Paola Bisignano, Calixto‐Hope G. Lucas, Erica Stevenson, Abrar Choudhury, Harish N. Vasudevan, Stephen T. Magill, Jacob S. Young, Nevan J. Krogan, Javier Villanueva-Meyer, Danielle L. Swaney, David R. Raleigh	2
6	Protocol for mapping differential protein-protein interaction networks using affinity purification-mass spectrometry 2024 ·STAR Protocols ·(unknown), Manisha R. Ummadi, Gwendolyn Μ. Jang, (unknown), (unknown), Katerina Alba, (unknown), (unknown), Jiewei Xu, Benjamin J. Polacco, (unknown), Erica Stevenson, Manon Eckhardt, (unknown), Robyn M. Kaake, Danielle L. Swaney, Nevan J. Krogan, Mehdi Bouhaddou	1
7	EGFR and EGFRvIII coopt host defense pathways promoting progression in glioblastoma 2024 ·Neuro-Oncology ·Zhenyi An, Qi-Wen Fan, Linyu Wang, Hiroyuki Yoda, (unknown), David Jimenez‐Morales, Joanna J. Phillips, Danielle L. Swaney, Erica Stevenson, Ethan Lee, Nevan J. Krogan, William A. Weiss	4
8	A Legionella toxin exhibits tRNA mimicry and glycosyl transferase activity to target the translation machinery and trigger a ribotoxic stress response 2023 ·Nature Cell Biology ·Advait Subramanian, Lan Wang, Tom Moss, Mark Voorhies, Smriti Sangwan, Erica Stevenson, Ernst H. Pulido, (unknown), Robert J. Chalkley, Kathy H. Li, Nevan J. Krogan, Danielle L. Swaney, Alma L. Burlingame, Stephen N. Floor, Anita Sil, Peter Walter, Shaeri Mukherjee	11
9	Next-generation proteomics for quantitative Jumbophage-bacteria interaction mapping 2023 ·Nature Communications ·Andrea Fossati, (unknown), (unknown), (unknown), Eliza Nieweglowska, Adrian Pelin, Yuping Li, (unknown), Nevan J. Krogan, David A. Agard, Joseph Bondy‐Denomy, Danielle L. Swaney	19
10	Functional analysis of a common BAG3 allele associated with protection from heart failure 2023 ·Nature Cardiovascular Research ·Juan A. Pérez-Bermejo, Luke M. Judge, (unknown), Kenneth Wu, Hannah L. Watry, Annie Truong, Jaclyn J. Ho, Matthew Carter, (unknown), Robyn M. Kaake, Ernst H. Pulido, Mohammad A. Mandegar, Danielle L. Swaney, Po-Lin So, Nevan J. Krogan, Bruce R. Conklin	3
11	Molecular determinants of the crosstalk between endosomal microautophagy and chaperone-mediated autophagy 2023 ·Cell Reports ·Gregory J. Krause, Philipp Kirchner, Barbara Stiller, Kateryna Morozova, Antonio Díaz, Kuei‐Ho Chen, Nevan J. Krogan, Esperanza Agulló-Pascual, Cristina C. Clement, (unknown), Danielle L. Swaney, (unknown), Jose Javier Bravo‐Cordero, Laura Santambrogio, Ana María Cuervo	17
12	Reduced endosomal microautophagy activity in aging associates with enhanced exocyst‐mediated protein secretion 2022 ·Aging Cell ·Gregory J. Krause, Antonio Díaz, Maryam Jafari, Rabia R. Khawaja, Esperanza Agulló-Pascual, Olaya Santiago‐Fernández, Alicia Richards, Kuei‐Ho Chen, (unknown), Yan Sun, Stephanie K. See, Kotb Abdelmohsen, (unknown), Nevan J. Krogan, Myriam Gorospe, Danielle L. Swaney, Simone Sidoli, Jose Javier Bravo‐Cordero, Martin Kampmann, Ana María Cuervo	20
13	Resistance to ATR Inhibitors Is Mediated by Loss of the Nonsense-Mediated Decay Factor UPF2 2022 ·Cancer Research ·Patrick C. O’Leary, Huadong Chen, (unknown), (unknown), Benjamin J. Polacco, Andrew S. McNeal, Tanushree Shenoy, Nupura Kale, Julia Carnevale, Erica Stevenson, David A. Quigley, Jonathan Chou, Felix Y. Feng, Danielle L. Swaney, Nevan J. Krogan, Minkyu Kim, Morgan E. Diolaiti, Alan Ashworth	17
14	Brown adipocyte ATF4 activation improves thermoregulation and systemic metabolism 2021 ·Cell Reports ·Esther Paulo, Yun Zhang, (unknown), Tony L. Huynh, Youngho Seo, Danielle L. Swaney, Margaret Soucheray, Erica Stevenson, David Jimenez‐Morales, Nevan J. Krogan, Biao Wang	20
15	A ciliopathy complex builds distal appendages to initiate ciliogenesis 2021 ·The Journal of Cell Biology ·Dhivya Kumar, (unknown), Vicente Herranz‐Pérez, Quanlong Lü, Xiaoyu Shi, Danielle L. Swaney, Erica Stevenson, Nevan J. Krogan, Bo Huang, Christopher J. Westlake, José Manuel García‐Verdugo, Bradley K. Yoder, Jeremy F. Reiter	30
16	Systems-level effects of allosteric perturbations to a model molecular switch 2021 ·Nature ·Tina Perica, Christopher J.P. Mathy, Jiewei Xu, Gwendolyn Μ. Jang, (unknown), Robyn M. Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme	12
17	The functional landscape of the human phosphoproteome breakdown → 2019 ·Nature Biotechnology ·David Ochoa, Andrew F. Jarnuczak, Cristina Viéitez, Maja Gehre, Margaret Soucheray, André Mateus, Askar A. Kleefeldt, Anthony D. Hill, Luz García‐Alonso, Frank Stein, Nevan J. Krogan, Mikhail M. Savitski, Danielle L. Swaney, Juan Antonio Vizcaíno, Kyung‐Min Noh, Pedro Beltrão	300
18	Multiple Routes to Oncogenesis Are Promoted by the Human Papillomavirus–Host Protein Network 2018 ·Cancer Discovery ·Manon Eckhardt, Wei Zhang, Andrew M. Gross, John Von Dollen, Jeffrey R. Johnson, Kathleen E. Franks-Skiba, Danielle L. Swaney, Tasha L. Johnson, Gwendolyn Μ. Jang, Priya S. Shah, Toni M. Brand, Jacques Archambault, Jason F. Kreisberg, Jennifer R. Grandis, Trey Ideker, Nevan J. Krogan	63
19	E2~Ub conjugates regulate the kinase activity of Shigella effector OspG during pathogenesis 2014 ·The EMBO Journal ·Jonathan N. Pruneda, F. Donelson Smith, (unknown), Danielle L. Swaney, Judit Villén, John D. Scott, Andrew W. Stadnyk, Isolde Le Trong, Ronald E. Stenkamp, Rachel E. Klevit, John R. Rohde, Peter S. Brzović	58
20	Systematic Functional Prioritization of Protein Posttranslational Modifications 2012 ·Cell ·Pedro Beltrão, Véronique Albanèse, Lukas Kenner, Danielle L. Swaney, Alma L. Burlingame, Judit Villén, (unknown), James S. Fraser, Judith Frydman, Nevan J. Krogan	345

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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