Pardis C. Sabeti

78.6k total citations · 15 hit papers
142 papers, 19.1k citations indexed

About

Pardis C. Sabeti is a scholar working on Molecular Biology, Infectious Diseases and Genetics. According to data from OpenAlex, Pardis C. Sabeti has authored 142 papers receiving a total of 19.1k indexed citations (citations by other indexed papers that have themselves been cited), including 49 papers in Molecular Biology, 48 papers in Infectious Diseases and 31 papers in Genetics. Recurrent topics in Pardis C. Sabeti's work include Viral Infections and Outbreaks Research (28 papers), Viral Infections and Vectors (18 papers) and Malaria Research and Control (14 papers). Pardis C. Sabeti is often cited by papers focused on Viral Infections and Outbreaks Research (28 papers), Viral Infections and Vectors (18 papers) and Malaria Research and Control (14 papers). Pardis C. Sabeti collaborates with scholars based in United States, United Kingdom and Senegal. Pardis C. Sabeti's co-authors include Eric S. Lander, S. F. Schaffner, Sharon R. Grossman, David Reich, David N. Reshef, Yakir Reshef, Hilary K. Finucane, Michael Mitzenmacher, Gil McVean and Peter J. Turnbaugh and has published in prestigious journals such as Nature, Science and New England Journal of Medicine.

In The Last Decade

Pardis C. Sabeti

135 papers receiving 18.7k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Nucleic acid detection with CRISPR-Cas13a/C2c2

2017 2.7k citations Jonathan S. Gootenberg, Omar O. Abudayyeh et al. Science profile →
Detecting Novel Associations in Large Data Sets

2011 2.3k citations David N. Reshef, Yakir Reshef et al. Science profile →
Detecting recent positive selection in the human genome from haplotype structure

2002 1.4k citations Pardis C. Sabeti, David Reich et al. Nature profile →
Genome-wide detection and characterization of positive selection in human populations

2007 1.4k citations Pardis C. Sabeti, Patrick Varilly et al. Nature profile →
Linkage disequilibrium in the human genome

2001 1.3k citations David Reich, Pardis C. Sabeti et al. Nature profile →
Positive Natural Selection in the Human Lineage

2006 802 citations Pardis C. Sabeti, S. F. Schaffner et al. Science profile →
Genetic Signatures of Strong Recent Positive Selection at the Lactase Gene

2004 693 citations Pardis C. Sabeti, S. F. Schaffner et al. profile →
Massively multiplexed nucleic acid detection with Cas13

2020 592 citations Cheri M. Ackerman, Cameron Myhrvold et al. Nature profile →
Common deletion polymorphisms in the human genome

2005 527 citations Pardis C. Sabeti, David Altshuler et al. Nature Genetics profile →
Detecting Natural Selection in Genomic Data

2013 424 citations Pardis C. Sabeti et al. profile →
A Composite of Multiple Signals Distinguishes Causal Variants in Regions of Positive Selection

2010 362 citations Eric S. Lander, S. F. Schaffner et al. Science profile →
Benchmarking Metagenomics Tools for Taxonomic Classification

2019 323 citations Katherine J. Siddle, Pardis C. Sabeti et al. Cell profile →
Programmable Inhibition and Detection of RNA Viruses Using Cas13

2019 293 citations Catherine A. Freije, Cameron Myhrvold et al. Molecular Cell profile →
Directed evolution of a family of AAV capsid variants enabling potent muscle-directed gene delivery across species

2021 292 citations Mohammadsharif Tabebordbar, Kim A. Lagerborg et al. Cell profile →
Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness

2022 162 citations Martin Jankowiak, Nikolaos Barkas et al. Science profile →

Peers

Countries citing papers authored by Pardis C. Sabeti

Since Specialization

Citations

This map shows the geographic impact of Pardis C. Sabeti's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Pardis C. Sabeti with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Pardis C. Sabeti more than expected).

Fields of papers citing papers by Pardis C. Sabeti

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Pardis C. Sabeti. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Pardis C. Sabeti. The network helps show where Pardis C. Sabeti may publish in the future.

Co-authorship network of co-authors of Pardis C. Sabeti

This figure shows the co-authorship network connecting the top 25 collaborators of Pardis C. Sabeti. A scholar is included among the top collaborators of Pardis C. Sabeti based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Pardis C. Sabeti. Pardis C. Sabeti is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work	Indexed citations
1	Pan-viral ORFs discovery using massively parallel ribosome profiling 2025 ·Science ·Shira Weingarten-Gabbay, Matthew R. Bauer, Alexandra C. Stanton, Yingpu Yu, Catherine A. Freije, (unknown), Chloe K. Boehm, Susan Klaeger, (unknown), Daniel López, Lisa E. Hensley, Karl R. Clauser, Steven A. Carr, Jennifer G. Abelin, Charles M. Rice, Pardis C. Sabeti	1
2	Bead-based approaches for increased sensitivity and multiplexing of CRISPR diagnostics 2025 ·Nature Biomedical Engineering ·Sameed M. Siddiqui, Nicole L. Welch, Tien G. Nguyen, (unknown), (unknown), Rebecca A. Senft, Jon Arizti-Sanz, Marzieh Ezzaty Mirhashemi, David R. Stirling, Cheri M. Ackerman, Beth A. Cimini, Paul C. Blainey, Pardis C. Sabeti, Cameron Myhrvold	0
3	CRISPR-Based Assays for Point-of-Need Detection and Subtyping of Influenza 2024 ·Journal of Molecular Diagnostics ·Yibin B. Zhang, Jon Arizti-Sanz, (unknown), (unknown), Tinna-Sólveig F. Kosoko-Thoroddsen, Pardis C. Sabeti, Cameron Myhrvold	4
4	Model-directed generation of artificial CRISPR–Cas13a guide RNA sequences improves nucleic acid detection 2024 ·Nature Biotechnology ·Sreekar Mantena, (unknown), Brittany A. Petros, Nicole L. Welch, Cameron Myhrvold, Pardis C. Sabeti, Hayden C. Metsky	9
5	Severe Acute Respiratory Syndrome Coronavirus 2 Household Transmission During the Omicron Era in Massachusetts: A Prospective, Case-Ascertained Study Using Genomic Epidemiology 2024 ·Open Forum Infectious Diseases ·(unknown), Taylor Brock-Fisher, Brittany A. Petros, (unknown), (unknown), (unknown), (unknown), (unknown), (unknown), (unknown), (unknown), (unknown), Gage K. Moreno, (unknown), Katherine C. DeRuff, Bronwyn MacInnis, Michael Springer, Pardis C. Sabeti, Kathryn E. Stephenson	0
6	Antigen test swabs are comparable to nasopharyngeal swabs for sequencing of SARS-CoV-2 2023 ·Scientific Reports ·(unknown), (unknown), Sobur Ali, Eleonora Cella, Catherine Johnston, Katherine C. DeRuff, Pardis C. Sabeti, Taj Azarian	4
7	High-depth sequencing characterization of viral dynamics across tissues in fatal COVID-19 reveals compartmentalized infection 2023 ·Nature Communications ·Erica Normandin, Melissa A. Rudy, Nikolaos Barkas, S. F. Schaffner, (unknown), Robert F. Padera, Mehrtash Babadi, Shibani S. Mukerji, Daniel J. Park, Bronwyn MacInnis, Katherine J. Siddle, Pardis C. Sabeti, Isaac H. Solomon	12
8	Multiplexed detection of bacterial nucleic acids using Cas13 in droplet microarrays 2022 ·PNAS Nexus ·Sri Gowtham Thakku, Cheri M. Ackerman, Cameron Myhrvold, Roby P. Bhattacharyya, Jonathan Livny, Peijun Ma, (unknown), Pardis C. Sabeti, Paul C. Blainey, Deborah T. Hung	26
9	Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness breakdown → 2022 ·Science ·(unknown), Martin Jankowiak, Nikolaos Barkas, S. F. Schaffner, Jesse D. Pyle, Leonid Yurkovetskiy, Matteo Bosso, Daniel J. Park, Mehrtash Babadi, Bronwyn MacInnis, Jeremy Luban, Pardis C. Sabeti, Jacob E. Lemieux	162
10	Systemic administration of novel engineered AAV capsids facilitates enhanced transgene expression in the macaque CNS 2022 ·Med ·Alexandra C. Stanton, Kim A. Lagerborg, (unknown), (unknown), Emily M. King, Simon Ye, Isaac H. Solomon, Mohammadsharif Tabebordbar, Pardis C. Sabeti	34
11	Direct characterization of cis-regulatory elements and functional dissection of complex genetic associations using HCR–FlowFISH 2021 ·Nature Genetics ·Steven K. Reilly, Sager J. Gosai, (unknown), (unknown), Jacob C. Ulirsch, Masahiro Kanai, Kousuke Mouri, Daniel Berenzy, Susan Kales, (unknown), Adrianne Gladden-Young, (unknown), Michael L. Stitzel, Hilary K. Finucane, Pardis C. Sabeti, Ryan Tewhey	42
12	Directed evolution of a family of AAV capsid variants enabling potent muscle-directed gene delivery across species breakdown → 2021 ·Cell ·Mohammadsharif Tabebordbar, Kim A. Lagerborg, Alexandra C. Stanton, Emily M. King, Simon Ye, (unknown), (unknown), Sahar Tavakoli, Jeffrey J. Widrick, Kathleen A. Messemer, Emily C. Troiano, Behzad Moghadaszadeh, (unknown), Krystynne A Leacock, Naftali Horwitz, Alan H. Beggs, Amy J. Wagers, Pardis C. Sabeti	292
13	Massively multiplexed nucleic acid detection with Cas13 breakdown → 2020 ·Nature ·Cheri M. Ackerman, Cameron Myhrvold, Sri Gowtham Thakku, Catherine A. Freije, Hayden C. Metsky, David Yang, (unknown), Chloe K. Boehm, Tinna-Sólveig F. Kosoko-Thoroddsen, Jared Kehe, Tien G. Nguyen, Amber Carter, Anthony Kulesa, John Barnes, Vivien G. Dugan, Deborah T. Hung, Paul C. Blainey, Pardis C. Sabeti	592
14	Identifying gene expression programs of cell-type identity and cellular activity with single-cell RNA-Seq 2019 ·eLife ·Dylan Kotliar, Adrian Veres, M. Aurel Nagy, Shervin Tabrizi, Eran Hodis, Douglas A. Melton, Pardis C. Sabeti	221
15	Programmable Inhibition and Detection of RNA Viruses Using Cas13 breakdown → 2019 ·Molecular Cell ·Catherine A. Freije, Cameron Myhrvold, Chloe K. Boehm, Aaron E. Lin, Nicole L. Welch, Amber Carter, Hayden C. Metsky, Cynthia Luo, Omar O. Abudayyeh, Jonathan S. Gootenberg, Nathan L. Yozwiak, Feng Zhang, Pardis C. Sabeti	293
16	Measuring dependence powerfully and equitably 2016 ·arXiv (Cornell University) ·Yakir Reshef, David N. Reshef, Hilary K. Finucane, Pardis C. Sabeti, Michael Mitzenmacher	25
17	Development of a Single Nucleotide Polymorphism Barcode to Genotype Plasmodium vivax Infections 2015 ·PLoS neglected tropical diseases ·Mary Lynn Baniecki, (unknown), S. F. Schaffner, Daniel J. Park, Kevin Galinsky, Rachel F. Daniels, Elizabeth Hamilton, Marcelo U. Ferreira, Nadira D. Karunaweera, David Serre, Peter A. Zimmerman, Juliana M. Sá, Thomas E. Wellems, L. Musset, Eric Legrand, Alexandre Melnikov, Daniel E. Neafsey, Sarah K. Volkman, Dyann F. Wirth, Pardis C. Sabeti	105
18	Cosi2: an efficient simulator of exact and approximate coalescent with selection 2014 ·Bioinformatics ·Ilya Shlyakhter, Pardis C. Sabeti, S. F. Schaffner	28
19	Genomic Sequencing of Plasmodium falciparum Malaria Parasites from Senegal Reveals the Demographic History of the Population 2012 ·Molecular Biology and Evolution ·Hsiao‐Han Chang, Daniel J. Park, Kevin Galinsky, S. F. Schaffner, Daouda Ndiaye, Omar Ndir, Souleymane Mboup, Roger C. Wiegand, Sarah K. Volkman, Pardis C. Sabeti, Dyann F. Wirth, Daniel E. Neafsey, Daniel L. Hartl	42
20	The Case for Selection at CCR5-Δ32 2005 ·PLoS ONE ·Pardis C. Sabeti, Emily C. Walsh, S. F. Schaffner, Patrick Varilly, Ben Fry, Holli B. Hutcheson, (unknown), Tarjei S. Mikkelsen, (unknown), Nick Patterson, Richard Cooper, David Reich, David Altshuler, Stephen J. O’Brien, Eric S. Lander	11

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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