Mark D. Robinson

91.9k total citations · 9 hit papers
173 papers, 46.9k citations indexed

About

Mark D. Robinson is a scholar working on Molecular Biology, Immunology and Cancer Research. According to data from OpenAlex, Mark D. Robinson has authored 173 papers receiving a total of 46.9k indexed citations (citations by other indexed papers that have themselves been cited), including 119 papers in Molecular Biology, 24 papers in Immunology and 24 papers in Cancer Research. Recurrent topics in Mark D. Robinson's work include Single-cell and spatial transcriptomics (30 papers), RNA modifications and cancer (26 papers) and Epigenetics and DNA Methylation (22 papers). Mark D. Robinson is often cited by papers focused on Single-cell and spatial transcriptomics (30 papers), RNA modifications and cancer (26 papers) and Epigenetics and DNA Methylation (22 papers). Mark D. Robinson collaborates with scholars based in Switzerland, United States and Australia. Mark D. Robinson's co-authors include Gordon K. Smyth, Davis J. McCarthy, Alicia Oshlack, Charlotte Soneson, Timothy R. Hughes, Lukas M. Weber, Helen Lindsay, Matthew D. Young, Charles Boone and Brenda Andrews and has published in prestigious journals such as Science, Cell and Proceedings of the National Academy of Sciences.

In The Last Decade

Mark D. Robinson

165 papers receiving 46.4k citations

Hit Papers

edgeR : a Bioconductor package for differential expressio... 2001 2026 2009 2017 2009 2010 2001 2013 2007 5.0k 10.0k 15.0k 20.0k 25.0k
What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

  1. edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
    2009 27.9k citations Mark D. Robinson et al. profile →
  2. A scaling normalization method for differential expression analysis of RNA-seq data
    2010 5.1k citations Mark D. Robinson et al. Genome biology profile →
  3. Systematic Genetic Analysis with Ordered Arrays of Yeast Deletion Mutants
    2001 1.6k citations Amy H.Y. Tong, Marie Evangelista et al. Science profile →
  4. Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
    2013 841 citations Mark D. Robinson et al. profile →
  5. Small-sample estimation of negative binomial dispersion, with applications to SAGE data
    2007 751 citations Mark D. Robinson et al. Biostatistics profile →
  6. Moderated statistical tests for assessing differences in tag abundance
    2007 586 citations Mark D. Robinson et al. profile →
  7. High-Throughput Mapping of a Dynamic Signaling Network in Mammalian Cells
    2005 553 citations Miriam Barrios‐Rodiles, Kevin R. Brown et al. Science profile →
  8. From RNA-seq reads to differential expression results
    2010 500 citations Mark D. Robinson et al. profile →
  9. Bias, robustness and scalability in single-cell differential expression analysis
    2018 386 citations Charlotte Soneson, Mark D. Robinson profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Mark D. Robinson Switzerland 57 29.2k 7.4k 6.7k 5.5k 5.5k 173 46.9k
Jo Vandesompele Belgium 70 29.8k 1.0× 11.2k 1.5× 5.6k 0.8× 5.3k 1.0× 4.5k 0.8× 299 50.4k
Davis J. McCarthy Australia 20 21.0k 0.7× 6.2k 0.8× 5.6k 0.8× 4.1k 0.7× 4.6k 0.8× 40 35.2k
Lior Pachter United States 56 36.2k 1.2× 8.1k 1.1× 12.4k 1.8× 7.7k 1.4× 4.8k 0.9× 175 55.2k
Nitin S. Baliga United States 46 26.6k 0.9× 5.9k 0.8× 5.1k 0.8× 3.9k 0.7× 3.4k 0.6× 144 41.8k
Michael W. Pfaffl Germany 47 30.7k 1.0× 6.1k 0.8× 9.5k 1.4× 6.7k 1.2× 7.1k 1.3× 247 62.0k
Gavin Sherlock United States 52 35.0k 1.2× 4.6k 0.6× 5.4k 0.8× 6.3k 1.1× 3.0k 0.5× 127 49.1k
Trey Ideker United States 81 46.8k 1.6× 8.2k 1.1× 6.4k 0.9× 6.4k 1.2× 4.9k 0.9× 246 66.9k
Damian Szklarczyk Switzerland 32 31.9k 1.1× 6.7k 0.9× 4.9k 0.7× 4.5k 0.8× 4.8k 0.9× 43 51.0k
Daehwan Kim United States 8 28.6k 1.0× 6.9k 0.9× 14.3k 2.1× 6.1k 1.1× 4.6k 0.8× 12 48.0k
Benno Schwikowski France 23 24.6k 0.8× 5.6k 0.8× 4.6k 0.7× 3.1k 0.6× 3.5k 0.6× 53 38.3k

Countries citing papers authored by Mark D. Robinson

Since Specialization
Citations

This map shows the geographic impact of Mark D. Robinson's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Mark D. Robinson with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Mark D. Robinson more than expected).

Fields of papers citing papers by Mark D. Robinson

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Mark D. Robinson. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Mark D. Robinson. The network helps show where Mark D. Robinson may publish in the future.

Co-authorship network of co-authors of Mark D. Robinson

This figure shows the co-authorship network connecting the top 25 collaborators of Mark D. Robinson. A scholar is included among the top collaborators of Mark D. Robinson based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Mark D. Robinson. Mark D. Robinson is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Love, Michael I., Annie Wong‐Beringer, Russell Corbett‐Detig, et al.. (2025). Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies. Cell Genomics. 5(5). 100845–100845. 3 indexed citations
2.
Lütge, Mechthild, Hung‐Wei Cheng, Angelina De Martin, et al.. (2025). Fibroblastic reticular cells form reactive myeloid cell niches in human lymph nodes. Science Immunology. 10(107). eads6820–eads6820. 4 indexed citations
3.
Tiberi, Simone, Charlotte Soneson, Dongze He, et al.. (2024). DifferentialRegulation : a Bayesian hierarchical approach to identify differentially regulated genes. Biostatistics. 25(4). 1079–1093.
4.
Macnair, Will & Mark D. Robinson. (2023). SampleQC: robust multivariate, multi-cell type, multi-sample quality control for single-cell data. Genome biology. 24(1). 23–23. 6 indexed citations
5.
Menigatti, Mirco, et al.. (2020). DAMEfinder: a method to detect differential allele-specific methylation. Epigenetics & Chromatin. 13(1). 11 indexed citations
6.
Soneson, Charlotte, Michael I. Love, Rob Patro, et al.. (2019). A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs. Life Science Alliance. 2(1). e201800175–e201800175. 11 indexed citations
7.
Cabello, Elena M., Karl Frontzek, Elisabeth J. Rushing, et al.. (2019). Active receptor tyrosine kinases, but not Brachyury, are sufficient to trigger chordoma in zebrafish. Disease Models & Mechanisms. 12(7). 10 indexed citations
8.
Krattinger, Simon G., Joohyun Kang, Rainer Böni, et al.. (2019). Abscisic acid is a substrate of the ABC transporter encoded by the durable wheat disease resistance gene Lr34. New Phytologist. 223(2). 853–866. 102 indexed citations
9.
Huang, Ruizhu, et al.. (2019). ARMOR: An A utomated R eproducible MO dular Workflow for Preprocessing and Differential Analysis of R NA-seq Data. G3 Genes Genomes Genetics. 9(7). 2089–2096. 32 indexed citations
10.
Cheng, Hung‐Wei, Lucas Onder, Mario Novković, et al.. (2019). Origin and differentiation trajectories of fibroblastic reticular cells in the splenic white pulp. Nature Communications. 10(1). 1739–1739. 73 indexed citations
11.
Doumpas, Nikolaos, Mark D. Robinson, Antonio Lentini, et al.. (2018). TCF / LEF dependent and independent transcriptional regulation of Wnt/β‐catenin target genes. The EMBO Journal. 38(2). 151 indexed citations
12.
Savić, Nataša, Femke Ringnalda, Helen Lindsay, et al.. (2018). Covalent linkage of the DNA repair template to the CRISPR-Cas9 nuclease enhances homology-directed repair. eLife. 7. 117 indexed citations
13.
Wu, Yanli, Ian Morilla, Ernst A. Wimmer, et al.. (2017). Male sex in houseflies is determined by Mdmd , a paralog of the generic splice factor gene CWC22. Science. 356(6338). 642–645. 99 indexed citations
14.
Soneson, Charlotte, Katarina L. Matthes, Małgorzata Nowicka, Charity W. Law, & Mark D. Robinson. (2016). Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage. Genome biology. 17(1). 12–12. 79 indexed citations
15.
Hartmann, Felix J., Raphaël Bernard‐Valnet, Clémence Queriault, et al.. (2016). High-dimensional single-cell analysis reveals the immune signature of narcolepsy. The Journal of Experimental Medicine. 213(12). 2621–2633. 76 indexed citations
16.
Omasits, Ulrich, Maxime Québatte, Daniel J. Stekhoven, et al.. (2013). Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome. Genome Research. 23(11). 1916–1927. 54 indexed citations
17.
Barrios‐Rodiles, Miriam, Kevin R. Brown, Barish Ozdamar, et al.. (2005). High-Throughput Mapping of a Dynamic Signaling Network in Mammalian Cells. Science. 307(5715). 1621–1625. 553 indexed citations breakdown →
18.
Tong, Amy H.Y., Marie Evangelista, Ainslie B. Parsons, et al.. (2001). Systematic Genetic Analysis with Ordered Arrays of Yeast Deletion Mutants. Science. 294(5550). 2364–2368. 1620 indexed citations breakdown →
19.
Robinson, Mark D., Carol Chu, G Turner, D. Timothy Bishop, & Graham R. Taylor. (2000). Exon Deletions and Duplications in BRCA1 Detected by Semiquantitative PCR. Genetic Testing. 4(1). 49–54. 12 indexed citations
20.
Roberts, Emma, et al.. (1997). Comparison of Enzyme Mismatch Cleavage and Chemical Cleavage of Mismatch on a Defined Set of Heteroduplexes. Genetic Testing. 1(4). 253–259. 7 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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