Jay Shendure

122.9k total citations · 38 hit papers
297 papers, 52.4k citations indexed

About

Jay Shendure is a scholar working on Molecular Biology, Genetics and Cancer Research. According to data from OpenAlex, Jay Shendure has authored 297 papers receiving a total of 52.4k indexed citations (citations by other indexed papers that have themselves been cited), including 249 papers in Molecular Biology, 97 papers in Genetics and 35 papers in Cancer Research. Recurrent topics in Jay Shendure's work include RNA and protein synthesis mechanisms (55 papers), Genomics and Chromatin Dynamics (54 papers) and Single-cell and spatial transcriptomics (51 papers). Jay Shendure is often cited by papers focused on RNA and protein synthesis mechanisms (55 papers), Genomics and Chromatin Dynamics (54 papers) and Single-cell and spatial transcriptomics (51 papers). Jay Shendure collaborates with scholars based in United States, Germany and United Kingdom. Jay Shendure's co-authors include Hanlee P. Ji, Martin Kircher, Gregory M. Cooper, Daniela Witten, Brian J. O’Roak, Cole Trapnell, Riza M. Daza, Choli Lee, Andrew C. Adey and Deborah A. Nickerson and has published in prestigious journals such as Nature, Science and New England Journal of Medicine.

In The Last Decade

Jay Shendure

291 papers receiving 51.6k citations

Hit Papers

A general framework for estimating the relative p... 2005 2026 2012 2019 2014 2008 2019 2018 2009 1000 2.0k 3.0k

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Jay Shendure United States 115 36.0k 17.1k 8.2k 4.4k 3.2k 297 52.4k
Andrew P. Feinberg United States 92 45.0k 1.2× 15.5k 0.9× 6.8k 0.8× 5.0k 1.2× 4.4k 1.4× 235 62.2k
Rafael A. Irizarry United States 74 38.9k 1.1× 8.1k 0.5× 8.1k 1.0× 4.2k 1.0× 5.2k 1.6× 191 57.2k
David Altshuler United States 80 29.7k 0.8× 30.5k 1.8× 7.1k 0.9× 7.1k 1.6× 4.3k 1.3× 150 63.8k
R Myers United States 95 32.6k 0.9× 12.7k 0.7× 4.3k 0.5× 4.8k 1.1× 3.6k 1.1× 299 50.2k
Mark A. DePristo United States 18 19.7k 0.5× 18.1k 1.1× 5.3k 0.6× 8.0k 1.8× 1.7k 0.5× 23 43.4k
Eric Banks United States 20 18.6k 0.5× 18.3k 1.1× 5.3k 0.6× 7.9k 1.8× 1.8k 0.5× 28 40.4k
Tim Fennell United States 8 26.6k 0.7× 14.3k 0.8× 5.3k 0.6× 10.0k 2.3× 2.6k 0.8× 8 47.2k
Brad T. Sherman United States 23 37.7k 1.0× 7.7k 0.5× 11.4k 1.4× 2.8k 0.6× 7.0k 2.1× 43 59.6k
Kristian Cibulskis United States 12 13.5k 0.4× 10.6k 0.6× 4.8k 0.6× 4.5k 1.0× 1.7k 0.5× 21 27.5k
Adrian Bird United Kingdom 100 51.3k 1.4× 21.6k 1.3× 4.2k 0.5× 4.6k 1.1× 3.1k 0.9× 232 61.8k

Countries citing papers authored by Jay Shendure

Since Specialization
Citations

This map shows the geographic impact of Jay Shendure's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jay Shendure with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jay Shendure more than expected).

Fields of papers citing papers by Jay Shendure

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jay Shendure. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jay Shendure. The network helps show where Jay Shendure may publish in the future.

Co-authorship network of co-authors of Jay Shendure

This figure shows the co-authorship network connecting the top 25 collaborators of Jay Shendure. A scholar is included among the top collaborators of Jay Shendure based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jay Shendure. Jay Shendure is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Fang, He, Giancarlo Bonora, Truong N. Nguyen, et al.. (2025). CTCF-mediated insulation and chromatin environment modulate Car5b escape from X inactivation. BMC Biology. 23(1). 68–68.
2.
Suiter, Chase C., Diego Calderon, David Lee, et al.. (2025). Combinatorial mapping of E3 ubiquitin ligases to their target substrates. Molecular Cell. 85(4). 829–842.e6. 3 indexed citations
3.
Chen, Wei, Junhong Choi, Xiaoyi Li, et al.. (2024). Symbolic recording of signalling and cis-regulatory element activity to DNA. Nature. 632(8027). 1073–1081. 20 indexed citations
4.
Askary, Amjad, Wei Chen, Junhong Choi, et al.. (2024). The lives of cells, recorded. Nature Reviews Genetics. 26(3). 203–222. 5 indexed citations
5.
Casto, Amanda M., Julia C. Bennett, Peter D. Han, et al.. (2024). SARS-CoV-2 Diversity and Transmission on a University Campus across Two Academic Years during the Pandemic. Clinical Chemistry. 71(1). 192–202.
6.
Chardon, Florence M., Troy A. McDiarmid, Nicholas F. Page, et al.. (2024). Multiplex, single-cell CRISPRa screening for cell type specific regulatory elements. Nature Communications. 15(1). 8209–8209. 14 indexed citations
7.
Liu, Yuzhen, Eva K. Nichols, David M Shechner, et al.. (2024). Efficient and highly amplified imaging of nucleic acid targets in cellular and histopathological samples with pSABER. Nature Methods. 22(1). 156–165. 2 indexed citations
8.
McCulloch, Denise J., Julia H. Rogers, Eric J. Chow, et al.. (2023). Respiratory syncytial virus and other respiratory virus infections in residents of homeless shelters – King County, Washington, 2019–2021. Influenza and Other Respiratory Viruses. 17(6). e13166–e13166. 5 indexed citations
9.
Calderon, Diego, Ronnie Blecher‐Gonen, Xingfan Huang, et al.. (2022). The continuum of Drosophila embryonic development at single-cell resolution. Science. 377(6606). eabn5800–eabn5800. 45 indexed citations
10.
Bonora, Giancarlo, Vijay Ramani, Ritambhara Singh, et al.. (2021). Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation. Genome biology. 22(1). 279–279. 16 indexed citations
11.
Cao, Junyue, Diana R. O’Day, Hannah A. Pliner, et al.. (2020). A human cell atlas of fetal gene expression. Science. 370(6518). 383 indexed citations breakdown →
12.
Cao, Junyue, Malte Spielmann, Xiaojie Qiu, et al.. (2019). The single-cell transcriptional landscape of mammalian organogenesis. Nature. 566(7745). 496–502. 2172 indexed citations breakdown →
13.
Chen, Wei, Aaron McKenna, Jacob Schreiber, et al.. (2019). Massively parallel profiling and predictive modeling of the outcomes of CRISPR/Cas9-mediated double-strand break repair. Nucleic Acids Research. 47(15). 7989–8003. 129 indexed citations
14.
Cao, Junyue, Jonathan S. Packer, Vijay Ramani, et al.. (2017). Comprehensive single-cell transcriptional profiling of a multicellular organism. Science. 357(6352). 661–667. 896 indexed citations breakdown →
15.
Gordon, David, John Huddleston, Mark Chaisson, et al.. (2016). Long-read sequence assembly of the gorilla genome. Science. 352(6281). aae0344–aae0344. 218 indexed citations
16.
McKenna, Aaron, Gregory M. Findlay, James A. Gagnon, et al.. (2016). Whole-organism lineage tracing by combinatorial and cumulative genome editing. Science. 353(6298). aaf7907–aaf7907. 477 indexed citations breakdown →
17.
FitzGerald, Liesel M., Akash Kumar, Evan A. Boyle, et al.. (2013). Germline Missense Variants in the BTNL2 Gene Are Associated with Prostate Cancer Susceptibility. Cancer Epidemiology Biomarkers & Prevention. 22(9). 1520–1528. 29 indexed citations
18.
Starita, Lea M., Jonathan N. Pruneda, Russell S. Lo, et al.. (2013). Activity-enhancing mutations in an E3 ubiquitin ligase identified by high-throughput mutagenesis. Proceedings of the National Academy of Sciences. 110(14). E1263–72. 127 indexed citations
19.
Roach, Jared C., Gustavo Glusman, Arian F. A. Smit, et al.. (2010). Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing. Science. 328(5978). 636–639. 722 indexed citations breakdown →
20.
Shendure, Jay, Gregory J. Porreca, Nikos B. Reppas, et al.. (2005). Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome. Science. 309(5741). 1728–1732. 860 indexed citations breakdown →

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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