Jay Shendure

122.9k citations

297 papers · 52.4k indexed · 38 hit papers · h-index 115

Genetics top 0.01%
- Genomics and Rare Diseases 26
Cancer Research top 0.05%
Molecular Biology top 0.02%
- RNA and protein synthesis mechanisms 55
- Genomics and Chromatin Dynamics 54
- Single-cell and spatial transcriptomics 51
- Genomics and Phylogenetic Studies 51
- CRISPR and Genetic Engineering 44
- RNA Research and Splicing 38
- RNA modifications and cancer 31
Aging top 0.2%
Biophysics top 0.1%

Co-authors: Hanlee P. Ji Martin Kircher Gregory M. Cooper Daniela Witten Brian J. O’Roak Cole Trapnell Riza M. Daza Choli Lee
Cited by: Genetics Cancer Research Molecular Biology
Journals: Nature (18 papers)Science (17 papers)Nature Biotechnology (15 papers)
Partner nations: United States Germany United Kingdom

In The Last Decade

Jay Shendure

291 papers receiving 51.6k citations

Hit Papers

15 papers align trajectories log scale

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

2023 Nature
2023 Molecular Systems Biology
2022 Nature
2022 Nature Reviews Methods Primers
2022 Nature Reviews Methods Primers
2021 Nature Biotechnology
2021 Genome Medicine
2021 Cancer Cell
2020 Science
2020 Nature
2019 Nature
2019 Cell
2018 Nature
2018 Nature Biotechnology
2018 Cell
2018 Science
2018 Nucleic Acids Research
2018 Molecular Cell
2017 Science
2017 Nature
2017 Nature
2016 Science
2016 PLoS Genetics
2016 Nature Medicine
2016 Cell
2015 Science
2014 Nature Genetics
2013 Nature Biotechnology
2012 Nature
2011 Nature Reviews Genetics
2011 Nature Genetics
2010 Nature
2010 Science
2010 Nature Methods
2009 Nature
2009 Nature Genetics
2008 Nature Biotechnology
2005 Science

Peers

Countries citing papers authored by Jay Shendure

Since Specialization

Citations

This map shows the geographic impact of Jay Shendure's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jay Shendure with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jay Shendure more than expected).

Fields of papers citing papers by Jay Shendure

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jay Shendure. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jay Shendure. The network helps show where Jay Shendure may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Jay Shendure, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Jay Shendure Line = papers co-authored together Jay Shendure links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	A parts list of promoters and gRNA scaffolds for mammalian genome engineering and molecular recording Nature Biotechnology ·Troy A. McDiarmid,Nuray Özkaraca,Wei Chen,Florence M. Chardon,Junhong Choi,Hanna Liao,Xiaoyi Li,Haedong Kim,Jean‐Benoît Lalanne,Tony Li,Jenny F. Nathans,Beth Martin,Le-Yung Wang,殷建光,David A. Hodell,Sudarshan Pinglay,Jay Shendure	2025	0
2	SARS-CoV-2 Diversity and Transmission on a University Campus across Two Academic Years during the Pandemic Clinical Chemistry ·Amanda M. Casto,叶建中,Julia C. Bennett,Bingnan Shi,Peter D. Han,Alisson Marcos Fogaça,Katherine Mader,Geoffrey S. Gottlieb,純荒谷,Maurice Guis,Livia da Silva Sena,Cao Haofeng,Astrid Nehlig,Christina M. Lockwood,Jay Shendure,Timothy M. Uyeki,Lea M. Starita,Trevor Bedford,Helen Y. Chu,Ana A. Weil	2024	0
3	Respiratory syncytial virus and other respiratory virus infections in residents of homeless shelters – King County, Washington, 2019–2021 Influenza and Other Respiratory Viruses ·Denise J. McCulloch,Julia H. Rogers,Michael O’Donoghue,Eric J. Chow,Stephanie Stilinovic,Caitlin R. Wolf,Timothy M. Uyeki,Melissa A. Rolfes,Emily Mosites,Jair Douglas Da Silva FREITAS,Jeffrey S. Duchin,Nancy Sugg,Alexander L. Greninger,Michael Boeckh,Janet A. Englund,Jay Shendure,James P. Hughes,Lea M. Starita,Pavitra Roychoudhury,Helen Y. Chu	2023	5
4	The continuum of Drosophila embryonic development at single-cell resolution Science ·Diego Calderon,Ronnie Blecher‐Gonen,Xingfan Huang,Stefano Secchia,Whitfield Growdon,Riza M. Daza,Beth Martin,Sirotina S.S. Sirotina S,Christoph Schaub,Cole Trapnell,Erica Larschan,Kate M. O’Connor-Giles,Eileen E. M. Furlong,Jay Shendure	2022	45
5	Results of genetic analysis of 11 341 participants enrolled in the My Life, Our Future hemophilia genotyping initiative in the United States Journal of Thrombosis and Haemostasis ·Jill M. Johnsen,O. R.,啓子山中,幹三鈴木,Beth Martin,Martin Kircher,Neil C. Josephson,Jay Shendure,Sarah Ruuska,Leonard A. Valentino,Glenn F. Pierce,Theresa Melendez,Dunlei Cheng,Michael Recht,Barbara A. Konkle	2022	16
6	The landscape of alternative polyadenylation in single cells of the developing mouse embryo Nature Communications ·Vikram Agarwal,M. Joubert,David R. Kelley,Jay Shendure	2021	36
7	Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation Genome biology ·Giancarlo Bonora,Vijay Ramani,Ritambhara Singh,He Fang,Dana L. Jackson,Sanjay Srivatsan,Ruolan Qiu,Choli Lee,Cole Trapnell,Jay Shendure,Zhijun Duan,Xinxian Deng,William Stafford Noble,Christine M. Distèche	2021	16
8	Embryo-scale, single-cell spatial transcriptomics Science ·Sanjay Srivatsan,Mary C. Regier,Eliza Barkan,Jennifer M. Franks,Jonathan S. Packer,Erik Hoekstra,Madeleine Duran,Sarah H. Saxton,Jon J. Ladd,Malte Spielmann,Carlos Lois,Paul D. Lampe,Jay Shendure,Kelly R. Stevens,Cole Trapnell	2021	170
9	Massively parallel profiling and predictive modeling of the outcomes of CRISPR/Cas9-mediated double-strand break repair Nucleic Acids Research ·Wei Chen,Aaron McKenna,Jacob Schreiber,Maximilian Haeussler,Yi Yin,Vikram Agarwal,William Stafford Noble,Jay Shendure	2019	129
10	Massively multiplex chemical transcriptomics at single-cell resolution Science ·Sanjay Srivatsan,José L. McFaline‐Figueroa,Vijay Ramani,Lauren M. Saunders,Junyue Cao,Jonathan S. Packer,Hannah A. Pliner,Dana L. Jackson,Riza M. Daza,Lena Christiansen,Fan Zhang,Frank J. Steemers,Jay Shendure,Cole Trapnell	2019	198
11	Mutations in the translocon‐associated protein complex subunit SSR3 cause a novel congenital disorder of glycosylation Journal of Inherited Metabolic Disease ·Bobby G. Ng,Charles Marques Lourenço,Marie‐Estelle Losfeld,Kati J. Buckingham,Martin Kircher,Deborah A. Nickerson,Jay Shendure,Michael J. Bamshad,Hudson H. Freeze	2019	19
12	Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome Nature Communications ·Giancarlo Bonora,Xinxian Deng,He Fang,Vijay Ramani,由紀子水谷,Joel B. Berletch,М. М. Петрунин,Zhijun Duan,Jay Shendure,William Stafford Noble,Christine M. Distèche	2018	50
13	Massively multiplex single-cell Hi-C Nature Methods ·Vijay Ramani,Xinxian Deng,Ruolan Qiu,Kevin L. Gunderson,Frank J. Steemers,Christine M. Distèche,William Stafford Noble,Zhijun Duan,Jay Shendure	2017	380
14	Whole-organism lineage tracing by combinatorial and cumulative genome editingbreakdown → Science ·Aaron McKenna,Gregory M. Findlay,James A. Gagnon,Marshall S. Horwitz,Alexander F. Schier,Jay Shendure	2016	477
15	Long-read sequence assembly of the gorilla genome Science ·David Gordon,John Huddleston,Mark Chaisson,C. Hill,Zev Kronenberg,Katherine M. Munson,Maika Malig,Archana N. Raja,Ian T. Fiddes,LaDeana Hillier,Christopher Dunn,Carl Baker,Joel Armstrong,Mark Diekhans,Benedict Paten,Jay Shendure,Richard K. Wilson,David Haussler,Chen-Shan Chin,Evan E. Eichler	2016	218
16	Mapping 3D genome architecture through in situ DNase Hi-C Nature Protocols ·Vijay Ramani,Darren A. Cusanovich,Ronald J. Hause,Wenxiu Ma,Ruolan Qiu,Xinxian Deng,C. Anthony Blau,Christine M. Distèche,William Stafford Noble,Jay Shendure,Zhijun Duan	2016	81
17	Germline Missense Variants in the BTNL2 Gene Are Associated with Prostate Cancer Susceptibility Cancer Epidemiology Biomarkers & Prevention ·Liesel M. FitzGerald,Akash Kumar,Evan A. Boyle,Yuzheng Zhang,Laura McIntosh,Suzanne Kolb,Marni Stott‐Miller,Tiffany Smith,Danielle M. Karyadi,Elaine A. Ostrander,Li Hsu,Jay Shendure,Janet L. Stanford	2013	29
18	Activity-enhancing mutations in an E3 ubiquitin ligase identified by high-throughput mutagenesis Proceedings of the National Academy of Sciences ·Lea M. Starita,Jonathan N. Pruneda,Russell S. Lo,Douglas M. Fowler,Helen J. Kim,Joseph B. Hiatt,Jay Shendure,Peter S. Brzović,Stanley Fields,Rachel E. Klevit	2013	127
19	Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencingbreakdown → Science ·Jared C. Roach,Gustavo Glusman,Arian F. A. Smit,Chad D. Huff,Robert Hubley,Paul Shannon,Lee Rowen,Krishna Prasad Pant,Nathan Goodman,Michael J. Bamshad,Jay Shendure,Radoje Drmanac,Lynn B. Jorde,Leroy Hood,David J. Galas	2010	722
20	Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genomebreakdown → Science ·Jay Shendure,Gregory J. Porreca,Nikos B. Reppas,Xiaoxia Lin,John P. McCutcheon,Aleksey Bilogur,Michael D. Wang,Kun Zhang,Robi D. Mitra,George M. Church	2005	860

About Jay Shendure

Jay Shendure is a scholar working on Aging, Molecular Biology and Genetics, having authored 297 papers that have together received 52.4k indexed citations. Recurring topics across this work include RNA and protein synthesis mechanisms (55 papers), Genomics and Chromatin Dynamics (54 papers), Single-cell and spatial transcriptomics (51 papers), Genomics and Phylogenetic Studies (51 papers), CRISPR and Genetic Engineering (44 papers), RNA Research and Splicing (38 papers), RNA modifications and cancer (31 papers) and Genomics and Rare Diseases (26 papers). The work is most often cited by research in Genetics (17.1k citations), Cancer Research (8.2k citations) and Molecular Biology (36.0k citations). Jay Shendure has collaborated with scholars based in United States, Germany and United Kingdom. Frequent co-authors include Hanlee P. Ji, Martin Kircher, Gregory M. Cooper, Daniela Witten, Brian J. O’Roak, Cole Trapnell, Riza M. Daza, Choli Lee, Andrew C. Adey and Deborah A. Nickerson. Their work appears in journals such as Nature, Science, Nature Biotechnology, Nature Genetics and Nature Communications.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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