Katherine J. Siddle

5.6k citations

25 papers · 943 indexed · 1 hit paper · h-index 15

Co-authors: Pardis C. Sabeti Daniel J. Park Lluís Quintana‐Murci Luis B. Barreiro Étienne Patin Hélène Quach Yohann Nédélec George H. Perry
Topics: MicroRNA in disease regulation (5 papers)Cancer-related molecular mechanisms research (5 papers)RNA modifications and cancer (4 papers)
Cited by: Cancer Research Molecular Biology Genetics
Journals: Cell Nature Communications Bioinformatics
Partner nations: United States France Canada

In The Last Decade

Katherine J. Siddle

23 papers receiving 930 citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Benchmarking Metagenomics Tools for Taxonomic Classification

2019 323 citations Katherine J. Siddle, Daniel J. Park et al. Cell profile →

Peers

Countries citing papers authored by Katherine J. Siddle

Since Specialization

Citations

This map shows the geographic impact of Katherine J. Siddle's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Katherine J. Siddle with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Katherine J. Siddle more than expected).

Fields of papers citing papers by Katherine J. Siddle

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Katherine J. Siddle. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Katherine J. Siddle. The network helps show where Katherine J. Siddle may publish in the future.

Co-authorship network of co-authors of Katherine J. Siddle

This figure shows the co-authorship network connecting the top 25 collaborators of Katherine J. Siddle. A scholar is included among the top collaborators of Katherine J. Siddle based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Katherine J. Siddle. Katherine J. Siddle is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Best practices when benchmarking CATCH for the design of genome enrichment probes 2026 ·Bioinformatics ·Hayden C. Metsky,Katherine J. Siddle,Christian B. Matranga,Pardis C. Sabeti	0
2	High-depth sequencing characterization of viral dynamics across tissues in fatal COVID-19 reveals compartmentalized infection 2023 ·Nature Communications ·Erica Normandin,Melissa A. Rudy,Nikolaos Barkas,S. F. Schaffner,(unknown),Robert F. Padera,Mehrtash Babadi,Shibani S. Mukerji,Daniel J. Park,Bronwyn MacInnis,Katherine J. Siddle,Pardis C. Sabeti,Isaac H. Solomon	12
3	Neuropathological features of SARS-CoV-2 delta and omicron variants 2023 ·Journal of Neuropathology & Experimental Neurology ·Erica Normandin,(unknown),(unknown),Rockib Uddin,(unknown),Bronwyn MacInnis,Robert F. Padera,Katherine J. Siddle,Jacob E. Lemieux,Pardis C. Sabeti,Shibani S. Mukerji,Isaac H. Solomon	12
4	Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques 2023 ·Nature Communications ·(unknown),(unknown),Raquel García-Pérez,Aaron E. Lin,Gordon Adams,Kayla G. Barnes,Katherine J. Siddle,Shirlee Wohl,Ferrán Reverter,John L. Rinn,Richard S. Bennett,Lisa E. Hensley,Pardis C. Sabeti,Marta Melé	10
5	Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques 2023 ·Zenodo (CERN European Organization for Nuclear Research) ·(unknown),(unknown),Raquel García-Pérez,Aaron E. Lin,Gordon Adams,Kayla G. Barnes,Katherine J. Siddle,Shirlee Wohl,Ferrán Reverter,John L. Rinn,Richard S. Bennett,Lisa E. Hensley,Pardis C. Sabeti,Marta Melé	1
6	Intrathecal inflammatory responses in the absence of SARS-CoV-2 nucleic acid in the CSF of COVID-19 hospitalized patients 2021 ·Journal of the Neurological Sciences ·Erica Normandin,Kathryn B. Holroyd,(unknown),Bennett Shaw,Katherine J. Siddle,Gordon Adams,Melissa A. Rudy,Isaac H. Solomon,Melis N. Anahtar,Jacob E. Lemieux,Bianca A. Trombetta,Pia Kivisäkk,Steven E. Arnold,Otto Rapalino,Anne Piantadosi,Pritha Sen,Eric Rosenberg,John A. Branda,Pardis C. Sabeti,Shibani S. Mukerji	28
7	Genomic investigation of a dengue virus outbreak in Thiès, Senegal, in 2018 2021 ·Scientific Reports ·Amy Gaye,Tolla Ndiaye,Mouhamad Sy,Awa B. Dème,(unknown),(unknown),Cheikh Ndiaye,(unknown),(unknown),Ibrahima Ndiaye,Christopher H. Tomkins-Tinch,Jules F. Gomis,Aïda Sadikh Badiane,Bronwyn MacInnis,Daniel J. Park,Mouhamadou Ndiaye,(unknown),Pardis C. Sabeti,Katherine J. Siddle,Daouda Ndiaye	19
8	Amplicon deep sequencing of kelch13 in Plasmodium falciparum isolates from Senegal 2020 ·Malaria Journal ·Amy Gaye,Mouhamad Sy,Tolla Ndiaye,Katherine J. Siddle,Daniel J. Park,Awa B. Dème,Aminata Mbaye,Baba Dièye,Yaye Dié Ndiaye,Daniel E. Neafsey,Angela M. Early,(unknown),(unknown),Mamadou Alpha Diallo,Khadim Diongue,Amy K. Bei,Ibrahima Ndiaye,Sarah K. Volkman,Aïda Sadikh Badiane,Daouda Ndiaye	11
9	Lassa Virus Genetics 2020 ·Current topics in microbiology and immunology ·Raphaëlle Klitting,Samar Mehta,Judith U. Oguzie,Paul E. Oluniyi,Matthias Pauthner,Katherine J. Siddle,Kristian G. Andersen,Christian Happi,Pardis C. Sabeti	4
10	Population variation in miRNAs and isomiRs and their impact on human immunity to infection 2020 ·Genome biology ·Maxime Rotival,Katherine J. Siddle,(unknown),Julien Pothlichet,Hélène Quach,Lluís Quintana‐Murci	20
11	Benchmarking Metagenomics Tools for Taxonomic Classificationbreakdown → 2019 ·Cell ·(unknown),Katherine J. Siddle,Daniel J. Park,Pardis C. Sabeti	323
12	miR-222 isoforms are differentially regulated by type-I interferon 2017 ·RNA ·(unknown),Katherine A. Pillman,Katherine J. Siddle,Geneviève Pépin,Minna‐Liisa Änkö,Claire E. McCoy,Traude H. Beilharz,Lluís Quintana‐Murci,Gregory J. Goodall,Cameron P. Bracken,Michael P. Gantier	27
13	Widespread Shortening of 3’ Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate Immune Responses to Infection 2016 ·PLoS Genetics ·Athma A. Pai,Golshid Baharian,(unknown),Jessica F. Brinkworth,Yohann Nédélec,Joseph W. Foley,Jean‐Christophe Grenier,Katherine J. Siddle,Anne Dumaine,Vania Yotova,Zachary P. Johnson,Robert E. Lanford,Christopher B. Burge,Luis B. Barreiro	71
14	Bacterial Infection Drives the Expression Dynamics of microRNAs and Their isomiRs 2015 ·PLoS Genetics ·Katherine J. Siddle,Ludovic Tailleux,Matthieu Deschamps,Yong‐Hwee Eddie Loh,Cécile Deluen,Brigitte Gicquel,Christophe Antoniewski,Luis B. Barreiro,Laurent Farinelli,Lluís Quintana‐Murci	48
15	The epigenomic landscape of African rainforest hunter-gatherers and farmers 2015 ·Nature Communications ·Maud Fagny,Étienne Patin,Julia L. MacIsaac,Maxime Rotival,Timothée Flutre,Meaghan J. Jones,Katherine J. Siddle,Hélène Quach,Christine Harmant,Lisa M. McEwen,Alain Froment,Évelyne Heyer,Antoine Gessain,Edouard Betsem,Patrick Mouguiama-Daouda,(unknown),George H. Perry,Luis B. Barreiro,Michael S. Kobor,Lluís Quintana‐Murci	64
16	A genomic portrait of the genetic architecture and regulatory impact of microRNA expression in response to infection 2014 ·Genome Research ·Katherine J. Siddle,Matthieu Deschamps,Ludovic Tailleux,Yohann Nédélec,Julien Pothlichet,Geanncarlo Lugo‐Villarino,Valentina Libri,Brigitte Gicquel,Olivier Neyrolles,Guillaume Laval,Étienne Patin,Luis B. Barreiro,Lluís Quintana‐Murci	51
17	The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists 2014 ·Nature Communications ·Étienne Patin,Katherine J. Siddle,Guillaume Laval,Hélène Quach,Christine Harmant,Noémie S. Becker,Alain Froment,Béatrice Regnault,(unknown),Simon Gravel,(unknown),Lolke van der Veen,Nathaniel J. Dominy,George H. Perry,Luis B. Barreiro,Paul Verdu,Évelyne Heyer,Lluís Quintana‐Murci	74
18	The Red Queen's long race: human adaptation to pathogen pressure 2014 ·Current Opinion in Genetics & Development ·Katherine J. Siddle,Lluís Quintana‐Murci	34
19	Bases adjacent to mononucleotide repeats show an increased single nucleotide polymorphism frequency in the human genome 2011 ·Bioinformatics ·Katherine J. Siddle,Judith A. Goodship,Bernard Keavney,Mauro Santibanez‐Koref	13
20	Genetic diversity and evidence for population admixture in Batak Negritos from Palawan 2011 ·American Journal of Physical Anthropology ·Clarissa Scholes,Katherine J. Siddle,Axel Ducourneau,Federica Crivellaro,Mari Järve,Siiri Rootsi,(unknown),Kristina Tabbada,Maru Mormina,Maere Reidla,Richard Villems,Toomas Kivisild,Marta Mìrazón Lahr,Andrea Bamberg Migliano	27

About Katherine J. Siddle

Katherine J. Siddle is a scholar working on Infectious Diseases, Cancer Research and Modeling and Simulation, having authored 25 papers that have together received 943 indexed citations. Recurring topics across this work include MicroRNA in disease regulation (5 papers), Cancer-related molecular mechanisms research (5 papers) and RNA modifications and cancer (4 papers). The work is most often cited by research in Cancer Research (146 citations), Molecular Biology (536 citations) and Genetics (189 citations). Katherine J. Siddle has collaborated with scholars based in United States, France and Canada. Frequent co-authors include Pardis C. Sabeti, Daniel J. Park, Lluís Quintana‐Murci, Luis B. Barreiro, Étienne Patin, Hélène Quach, Yohann Nédélec, George H. Perry, Matthieu Deschamps and Christine Harmant. Their work appears in journals such as Cell, Nature Communications and Bioinformatics.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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