Katherine J. Siddle

5.6k total citations · 1 hit paper
25 papers, 943 citations indexed

About

Katherine J. Siddle is a scholar working on Molecular Biology, Infectious Diseases and Cancer Research. According to data from OpenAlex, Katherine J. Siddle has authored 25 papers receiving a total of 943 indexed citations (citations by other indexed papers that have themselves been cited), including 11 papers in Molecular Biology, 9 papers in Infectious Diseases and 6 papers in Cancer Research. Recurrent topics in Katherine J. Siddle's work include MicroRNA in disease regulation (5 papers), Cancer-related molecular mechanisms research (5 papers) and RNA modifications and cancer (4 papers). Katherine J. Siddle is often cited by papers focused on MicroRNA in disease regulation (5 papers), Cancer-related molecular mechanisms research (5 papers) and RNA modifications and cancer (4 papers). Katherine J. Siddle collaborates with scholars based in United States, France and Canada. Katherine J. Siddle's co-authors include Pardis C. Sabeti, Daniel J. Park, Lluís Quintana‐Murci, Luis B. Barreiro, Étienne Patin, Hélène Quach, Yohann Nédélec, George H. Perry, Matthieu Deschamps and Christine Harmant and has published in prestigious journals such as Cell, Nature Communications and Bioinformatics.

In The Last Decade

Katherine J. Siddle

23 papers receiving 930 citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Benchmarking Metagenomics Tools for Taxonomic Classification

2019 323 citations Katherine J. Siddle, Daniel J. Park et al. Cell profile →

Peers

Katherine J. Siddle

GENET

ECOLO

Donna M. Muzny United States

Siew Woh Choo Malaysia

Ziyuan Duan China

José Luis Villanueva‐Cañas Spain

Barbara Holzer Austria

Antoine Giraud France

François Renaud France

Urmi Trivedi United Kingdom

Pamela Nicholson Switzerland

Donna M. Muzny United States

Katherine J. Siddle

580 ×1.1

328 ×1.7

GENET

89 ×0.6

51 ×0.4

140 ×1.2

ECOLO

Citations per year, relative to Katherine J. Siddle Katherine J. Siddle (= 1×) peers Donna M. Muzny

Countries citing papers authored by Katherine J. Siddle

Since Specialization

Citations

This map shows the geographic impact of Katherine J. Siddle's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Katherine J. Siddle with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Katherine J. Siddle more than expected).

Fields of papers citing papers by Katherine J. Siddle

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Katherine J. Siddle. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Katherine J. Siddle. The network helps show where Katherine J. Siddle may publish in the future.

Co-authorship network of co-authors of Katherine J. Siddle

This figure shows the co-authorship network connecting the top 25 collaborators of Katherine J. Siddle. A scholar is included among the top collaborators of Katherine J. Siddle based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Katherine J. Siddle. Katherine J. Siddle is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Metsky, Hayden C., Katherine J. Siddle, Christian B. Matranga, & Pardis C. Sabeti. (2026). Best practices when benchmarking CATCH for the design of genome enrichment probes. Bioinformatics.

Normandin, Erica, Melissa A. Rudy, Nikolaos Barkas, et al.. (2023). High-depth sequencing characterization of viral dynamics across tissues in fatal COVID-19 reveals compartmentalized infection. Nature Communications. 14(1). 574–574. 12 indexed citations

Normandin, Erica, Rockib Uddin, Bronwyn MacInnis, et al.. (2023). Neuropathological features of SARS-CoV-2 delta and omicron variants. Journal of Neuropathology & Experimental Neurology. 82(4). 283–295. 12 indexed citations

García-Pérez, Raquel, Aaron E. Lin, Gordon Adams, et al.. (2023). Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques. Nature Communications. 14(1). 3866–3866. 10 indexed citations

García-Pérez, Raquel, Aaron E. Lin, Gordon Adams, et al.. (2023). Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques. Zenodo (CERN European Organization for Nuclear Research). 1 indexed citations

Normandin, Erica, Kathryn B. Holroyd, Bennett Shaw, et al.. (2021). Intrathecal inflammatory responses in the absence of SARS-CoV-2 nucleic acid in the CSF of COVID-19 hospitalized patients. Journal of the Neurological Sciences. 430. 120023–120023. 28 indexed citations

Gaye, Amy, Tolla Ndiaye, Mouhamad Sy, et al.. (2021). Genomic investigation of a dengue virus outbreak in Thiès, Senegal, in 2018. Scientific Reports. 11(1). 10321–10321. 19 indexed citations

Gaye, Amy, Mouhamad Sy, Tolla Ndiaye, et al.. (2020). Amplicon deep sequencing of kelch13 in Plasmodium falciparum isolates from Senegal. Malaria Journal. 19(1). 134–134. 11 indexed citations

Klitting, Raphaëlle, Samar Mehta, Judith U. Oguzie, et al.. (2020). Lassa Virus Genetics. Current topics in microbiology and immunology. 440. 23–65. 4 indexed citations

10.

Rotival, Maxime, et al.. (2020). Population variation in miRNAs and isomiRs and their impact on human immunity to infection. Genome biology. 21(1). 187–187. 20 indexed citations

11.

Siddle, Katherine J., et al.. (2019). Benchmarking Metagenomics Tools for Taxonomic Classification. Cell. 178(4). 779–794. 323 indexed citations breakdown →

12.

Pillman, Katherine A., Katherine J. Siddle, Geneviève Pépin, et al.. (2017). miR-222 isoforms are differentially regulated by type-I interferon. RNA. 24(3). 332–341. 27 indexed citations

13.

Pai, Athma A., Golshid Baharian, Jessica F. Brinkworth, et al.. (2016). Widespread Shortening of 3’ Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate Immune Responses to Infection. PLoS Genetics. 12(9). e1006338–e1006338. 71 indexed citations

14.

Siddle, Katherine J., Ludovic Tailleux, Matthieu Deschamps, et al.. (2015). Bacterial Infection Drives the Expression Dynamics of microRNAs and Their isomiRs. PLoS Genetics. 11(3). e1005064–e1005064. 48 indexed citations

15.

Fagny, Maud, Étienne Patin, Julia L. MacIsaac, et al.. (2015). The epigenomic landscape of African rainforest hunter-gatherers and farmers. Nature Communications. 6(1). 10047–10047. 64 indexed citations

16.

Siddle, Katherine J., Matthieu Deschamps, Ludovic Tailleux, et al.. (2014). A genomic portrait of the genetic architecture and regulatory impact of microRNA expression in response to infection. Genome Research. 24(5). 850–859. 51 indexed citations

17.

Patin, Étienne, Katherine J. Siddle, Guillaume Laval, et al.. (2014). The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists. Nature Communications. 5(1). 3163–3163. 74 indexed citations

18.

Siddle, Katherine J. & Lluís Quintana‐Murci. (2014). The Red Queen's long race: human adaptation to pathogen pressure. Current Opinion in Genetics & Development. 29. 31–38. 34 indexed citations

19.

Siddle, Katherine J., Judith A. Goodship, Bernard Keavney, & Mauro Santibanez‐Koref. (2011). Bases adjacent to mononucleotide repeats show an increased single nucleotide polymorphism frequency in the human genome. Bioinformatics. 27(7). 895–898. 13 indexed citations

20.

Scholes, Clarissa, Katherine J. Siddle, Axel Ducourneau, et al.. (2011). Genetic diversity and evidence for population admixture in Batak Negritos from Palawan. American Journal of Physical Anthropology. 146(1). 62–72. 27 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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