Adam P. Arkin

76.4k citations

362 papers · 43.5k indexed · 12 hit papers · h-index 84

Impact in

Molecular Biology top 0.02%
- Gene Regulatory Network Analysis
- CRISPR and Genetic Engineering
- Genomics and Phylogenetic Studies
- Microbial Metabolic Engineering and Bioproduction
- RNA and protein synthesis mechanisms
- Gut microbiota and health
Ecology top 0.05%
- Microbial Community Ecology and Physiology

Papers in

Ecology 99
- Microbial Community Ecology and Physiology 75
Genetics 102
- Bacterial Genetics and Biotechnology 79

Co-authors: Morgan N. Price Paramvir Dehal Harley H. McAdams Lei S. Qi Jennifer A. Doudna Christopher V. Rao John Ross Jonathan S. Weissman
Journals: Journal of Bacteriology (19 papers)Proceedings of the National Academy of Sciences (18 papers)Applied and Environmental Microbiology (17 papers)PLoS ONE (15 papers)mBio (13 papers)
Partner nations: United States China Russia

In The Last Decade

Adam P. Arkin

349 papers receiving 42.9k citations

Hit Papers

12 papers align trajectories log scale

A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming 2020 · 853 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2020 Nature Communications
2018 Molecular Systems Biology
2014 Proceedings of the National Academy of Sciences
2013 Cell
2013 Nature Methods
2011 Proceedings of the National Academy of Sciences
2010 PLoS ONE
2009 Molecular Biology and Evolution
2002 Nature
1999 Trends in Genetics
1998 Genetics
1997 Proceedings of the National Academy of Sciences

Peers

Countries citing papers authored by Adam P. Arkin

Since Specialization

Citations

This map shows the geographic impact of Adam P. Arkin's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Adam P. Arkin with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Adam P. Arkin more than expected).

Fields of papers citing papers by Adam P. Arkin

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Adam P. Arkin. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Adam P. Arkin. The network helps show where Adam P. Arkin may publish in the future.

Co-authors

The 25 scholars most cited alongside Adam P. Arkin, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Adam P. Arkin Line = papers co-authored together Adam P. Arkin links everyone, so they are left out of the graph.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work
1	Emergence and disruption of cooperativity in a denitrifying microbial community The ISME Journal ·Alex V. Carr, 泰貴小林, Kristopher A. Hunt, Yan Chen, James M. Wilson, José P. Faria, Filipe Liu, Janaka N. Edirisinghe, Jacob J. Valenzuela, Serdar Turkarslan, Lauren Michelle Lui, Torben Nielsen, Adam P. Arkin, Christopher S. Henry, Christopher J. Petzold, David A. Stahl, Nitin S. Baliga	2025	1
2	CORAL: A framework for rigorous self-validated data modeling and integrative, reproducible data analysis GigaScience ·Pavel S. Novichkov, John‐Marc Chandonia, Adam P. Arkin	2022	4
3	The genetic basis of phage susceptibility, cross-resistance and host-range in Salmonella Microbiology ·Benjamin A. Adler, Alexey E. Kazakov, Carlotta Zucca, Hualan Liu, Elizabeth Kutter, Lauren Michelle Lui, Torben Nielsen, Möntmann, Adam M. Deutschbauer, Vivek K. Mutalik, Adam P. Arkin	2021	35
4	Selective carbon sources influence the end products of microbial nitrate respiration The ISME Journal ·Hans K. Carlson, Lauren Michelle Lui, Morgan N. Price, Alexey E. Kazakov, Alex V. Carr, Jennifer V. Kuehl, Trenton K. Owens, Torben Nielsen, Adam P. Arkin, Adam M. Deutschbauer	2020	84
5	Multiplexed CRISPR-Cas9-Based Genome Editing of Rhodosporidium toruloides mSphere ·Peter B. Otoupal, Masakazu Ito, Adam P. Arkin, Jon Magnuson, John M. Gladden, Jeffrey M. Skerker	2019	56
6	Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Pseudomonas putida Lysine Metabolism mBio ·Mitchell G. Thompson, Jacquelyn M. Blake-Hedges, Pablo Cruz‐Morales, Jesus F. Barajas, S.C. Curran, Christopher B. Eiben, Nicholas C. Harris, Veronica T. Benites, Jennifer Gin, 勝志宮下, 鐵太郎佐藤, L. Blair, Oluwaseye Gbeminiyi Dosumu, J.H. Pereira, Edward E. K. Baidoo, Christopher J. Petzold, Paul D. Adams, Adam P. Arkin, Adam M. Deutschbauer, Jay D. Keasling	2019	47
7	Genomewide and Enzymatic Analysis Reveals Efficient d -Galacturonic Acid Metabolism in the Basidiomycete Yeast Rhodosporidium toruloides mSystems ·Ryan J. Protzko, Евгений Константинович Молчанов, Samuel T. Coradetti, Timo Fockenberg, 许钦松, Nils Thieme, Gina M. Geiselman, Adam P. Arkin, Jeffrey M. Skerker, John E. Dueber, J. Philipp Benz	2019	23
8	Principles of synthetic biology: a MOOC for an emerging field PubMed ·Daniel A. Anderson, Ross D. Jones, Adam P. Arkin, Ron Weiss	2019	10
9	Engineering Kluyveromyces marxianus as a Robust Synthetic Biology Platform Host mBio ·Priyanshu Yadav, Raíssa Estrela, Snigdha Poddar, Jeffrey M. Skerker, Y. Frank Cheng, Diana Carvahlo, محمد غربي, Iman Soepomo, Suk-Kyu Chang, Owen Ryan, 立宏刘, Adam P. Arkin, John W. Taylor, J.H.D. Cate	2018	57
10	Evaluation of 244,000 synthetic sequences reveals design principles to optimize translation in Escherichia coli Nature Biotechnology ·Guillaume Cambray, Joao C. Guimaraes, Adam P. Arkin	2018	158
11	PaperBLAST: Text Mining Papers for Information about Homologs mSystems ·Morgan N. Price, Adam P. Arkin	2017	86
12	Unintended Laboratory-Driven Evolution Reveals Genetic Requirements for Biofilm Formation by Desulfovibrio vulgaris Hildenborough mBio ·Kara B. De León, Grant M. Zane, Valentine V. Trotter, R Klein, Adam P. Arkin, Gareth Butland, Peter J. Walian, Matthew W. Fields, Judy D. Wall	2017	15
13	Quantitative Trait Loci (QTL)-Guided Metabolic Engineering of a Complex Trait ACS Synthetic Biology ·José L. Escalante-González, Jae-Sub Ko, Dominic Pinel, Štefan Bauer, Amanda L. Muehlbauer, Tyler D. Ames, Jeffrey M. Skerker, Adam P. Arkin	2016	16
14	Combinatorial Latency Reactivation for HIV-1 Subtypes and Variants Journal of Virology ·John Burnett, Kwang‐il Lim, Guangzheng Zhu, John J. Rossi, David V. Schaffer, Adam P. Arkin	2010	91
15	The Electron Transfer System of Syntrophically Grown Desulfovibrio vulgaris Journal of Bacteriology ·C. B. Walker, Zhili He, Zamin K. Yang, Joseph A. Ringbauer, Qiang He, Jizhong Zhou, Gerrit Voordouw, Judy D. Wall, Adam P. Arkin, Terry C. Hazen, Sergey Stolyar, David A. Stahl	2009	115
16	Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth Science ·Dylan Chivian, Eoin Brodie, Eric J. Alm, David Culley, Paramvir Dehal, Todd Z. DeSantis, Thomas M. Gihring, Alla Lapidus, Li‐Hung Lin, Stephen Lowry, Duane P. Moser, Paul M. Richardson, Gordon Southam, Greg Wanger, Lisa M. Pratt, Gary L. Andersen, Terry C. Hazen, Fred J. Brockman, Adam P. Arkin, T. C. Onstott	2008	329
17	RegTransBase - A Database Of Regulatory Sequences and Interactions in a Wide Range of \nProkaryotic Genomes eScholarship (California Digital Library) ·Alexey E. Kazakov, Michael J. Cipriano, Pavel S. Novichkov, Simon Minovitsky, D. V. Vinogradov, Adam P. Arkin, Yurembam Motilan, Mikhail S. Gelfand, Inna Dubchak	2006	81
18	Stochastic amplification and signaling in enzymatic futile cycles through noise-induced bistability with oscillations Proceedings of the National Academy of Sciences ·Michael S. Samoilov, А. О. Воронина, Adam P. Arkin	2005	247
19	OpWise: Operons aid the identification of differentially expressed genes in bacterial \nmicroarray experiments SHILAP Revista de lepidopterología ·Morgan N. Price, Adam P. Arkin, Eric J. Alm	2005	22
20	Chemogenomic profiling: Identifying the functional interactions of small molecules in yeast Proceedings of the National Academy of Sciences ·Guri Giaever, Patrick Flaherty, Jochen Kumm, Michael Proctor, Corey Nislow, Daniel F. Jaramillo, Angela Chu, Michael I. Jordan, Adam P. Arkin, Ronald W. Davis	2004	377

About Adam P. Arkin

Adam P. Arkin is a scholar working on Ecology, Genetics, Molecular Biology, Environmental Engineering and Pollution, having authored 362 papers that have together received 43.5k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (81 papers), Bacterial Genetics and Biotechnology (79 papers), Microbial Community Ecology and Physiology (75 papers), Gene Regulatory Network Analysis (60 papers), Microbial Metabolic Engineering and Bioproduction (59 papers), RNA and protein synthesis mechanisms (49 papers), CRISPR and Genetic Engineering (39 papers) and Microbial Fuel Cells and Bioremediation (34 papers). The work is most often cited by research in Molecular Biology (30.0k citations), Ecology (8.5k citations), Endocrinology (1.4k citations), Genetics (7.6k citations) and Aging (371 citations). Adam P. Arkin has collaborated with scholars based in United States, China and Russia. Frequent co-authors include Morgan N. Price, Paramvir Dehal, Harley H. McAdams, Lei S. Qi, Jennifer A. Doudna, Christopher V. Rao, John Ross, Jonathan S. Weissman, Matthew H. Larson and Wendell A. Lim. Their work appears in journals such as Journal of Bacteriology, Proceedings of the National Academy of Sciences, Applied and Environmental Microbiology, PLoS ONE and mBio.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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