John R. Yates

148.2k total citations · 39 hit papers
995 papers, 108.9k citations indexed

About

John R. Yates is a scholar working on Molecular Biology, Spectroscopy and Cell Biology. According to data from OpenAlex, John R. Yates has authored 995 papers receiving a total of 108.9k indexed citations (citations by other indexed papers that have themselves been cited), including 742 papers in Molecular Biology, 251 papers in Spectroscopy and 207 papers in Cell Biology. Recurrent topics in John R. Yates's work include Advanced Proteomics Techniques and Applications (224 papers), Mass Spectrometry Techniques and Applications (186 papers) and Ubiquitin and proteasome pathways (91 papers). John R. Yates is often cited by papers focused on Advanced Proteomics Techniques and Applications (224 papers), Mass Spectrometry Techniques and Applications (186 papers) and Ubiquitin and proteasome pathways (91 papers). John R. Yates collaborates with scholars based in United States, Brazil and United Kingdom. John R. Yates's co-authors include Jimmy K. Eng, Michael P. Washburn, Ashley L. McCormack, Dirk Wolters, W. Hayes McDonald, David Schieltz, Rovshan G. Sadygov, David L. Tabb, Christine C. Wu and Hongbin Liu and has published in prestigious journals such as Nature, Science and Cell.

In The Last Decade

John R. Yates

977 papers receiving 107.1k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

1994 5.1k citations John R. Yates et al. profile →
Large-scale analysis of the yeast proteome by multidimensional protein identification technology

2001 3.8k citations Michael P. Washburn, John R. Yates et al. profile →
A Model for Random Sampling and Estimation of Relative Protein Abundance in Shotgun Proteomics

2004 2.0k citations John R. Yates et al. profile →
Microglia Promote Learning-Dependent Synapse Formation through Brain-Derived Neurotrophic Factor

2013 1.9k citations John R. Yates et al. profile →
Wnt proteins are lipid-modified and can act as stem cell growth factors

2003 1.8k citations John R. Yates et al. profile →
Direct analysis of protein complexes using mass spectrometry

1999 1.8k citations John R. Yates et al. profile →
An Automated Multidimensional Protein Identification Technology for Shotgun Proteomics

2001 1.4k citations Michael P. Washburn, John R. Yates et al. profile →
DTASelect and Contrast: Tools for Assembling and Comparing Protein Identifications from Shotgun Proteomics

2002 1.1k citations W. Hayes McDonald, John R. Yates et al. profile →
Protein Analysis by Shotgun/Bottom-up Proteomics

2013 1.1k citations John R. Yates et al. profile →
A proteomic view of the Plasmodium falciparum life cycle

2002 1.0k citations Laurence Florens, Michael P. Washburn et al. profile →
Histone H3 Methylation by Set2 Directs Deacetylation of Coding Regions by Rpd3S to Suppress Spurious Intragenic Transcription

2005 1.0k citations Laurence Florens, Selene K. Swanson et al. profile →
Method to Correlate Tandem Mass Spectra of Modified Peptides to Amino Acid Sequences in the Protein Database

1995 993 citations John R. Yates et al. profile →
The hMre11/hRad50 Protein Complex and Nijmegen Breakage Syndrome: Linkage of Double-Strand Break Repair to the Cellular DNA Damage Response

1998 981 citations John R. Yates et al. profile →
Protein sequencing by tandem mass spectrometry.

1986 927 citations John R. Yates et al. Proceedings of the National Academy of Sciences profile →
Assembly and aggregation properties of synthetic Alzheimer's A4/beta amyloid peptide analogs.

1992 860 citations John R. Yates et al. profile →
Role of Rpn11 Metalloprotease in Deubiquitination and Degradation by the 26 S Proteasome

2002 810 citations Rati Verma, L. Aravind et al. Science profile →
Proteomics by Mass Spectrometry: Approaches, Advances, and Applications

2009 749 citations John R. Yates et al. profile →
Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

2004 593 citations John D. Venable, Meng‐Qiu Dong et al. profile →
The insulin-like growth factor (IGF)-dependent IGF binding protein-4 protease secreted by human fibroblasts is pregnancy-associated plasma protein-A

1999 589 citations John R. Yates et al. Proceedings of the National Academy of Sciences profile →
The human CENP-A centromeric nucleosome-associated complex

2006 566 citations Aaron O. Bailey, John R. Yates et al. profile →
A method for the comprehensive proteomic analysis of membrane proteins

2003 544 citations John R. Yates et al. profile →
The CREB Coactivator TORC2 Functions as a Calcium- and cAMP-Sensitive Coincidence Detector

2004 541 citations John R. Yates et al. profile →
Acetylation by Tip60 Is Required for Selective Histone Variant Exchange at DNA Lesions

2004 539 citations T Kusch, Laurence Florens et al. Science profile →
Mass spectrometry and the age of the proteome

1998 534 citations John R. Yates profile →
Nuclear Membrane Proteins with Potential Disease Links Found by Subtractive Proteomics

2003 526 citations Laurence Florens, John R. Yates et al. Science profile →
A role for the P-body component GW182 in microRNA function

2005 524 citations John R. Yates et al. profile →
Mass spectrometry for proteomics

2008 517 citations John R. Yates et al. profile →
Centromere-Specific Assembly of CENP-A Nucleosomes Is Mediated by HJURP

2009 510 citations Aaron O. Bailey, John R. Yates et al. profile →
Shotgun identification of protein modifications from protein complexes and lens tissue

2002 506 citations W. Hayes McDonald, Michael P. Washburn et al. Proceedings of the National Academy of Sciences profile →
Peptide Mass Maps: A Highly Informative Approach to Protein Identification

1993 503 citations John R. Yates et al. profile →
Phospho-Regulation of Kinetochore-Microtubule Attachments by the Aurora Kinase Ipl1p

2002 503 citations Scott Anderson, John R. Yates et al. profile →
Analysis of the myosin-II-responsive focal adhesion proteome reveals a role for β-Pix in negative regulation of focal adhesion maturation

2011 477 citations Xuemei Han, John R. Yates et al. profile →
Isobaric Labeling-Based Relative Quantification in Shotgun Proteomics

2014 445 citations John R. Yates et al. profile →
Surface Chemistry of Silicon

1995 439 citations John R. Yates et al. profile →
Molecular Architecture of the Human Pre-mRNA 3′ Processing Complex

2009 432 citations Ali Sarkeshik, John R. Yates et al. profile →
The Exopolysaccharide Matrix Modulates the Interaction between 3D Architecture and Virulence of a Mixed-Species Oral Biofilm

2012 417 citations Bingwen Lu, Claire Delahunty et al. profile →
Functional specialization of β-arrestin interactions revealed by proteomic analysis

2007 327 citations Daniel B. McClatchy, John R. Yates et al. Proceedings of the National Academy of Sciences profile →
The SARS-CoV-2 nucleocapsid phosphoprotein forms mutually exclusive condensates with RNA and the membrane-associated M protein

2021 304 citations Jolene K. Diedrich, John R. Yates et al. profile →
HSP70 chaperones RNA-free TDP-43 into anisotropic intranuclear liquid spherical shells

2021 218 citations John R. Yates, Don W. Cleveland et al. Science profile →

Peers

Countries citing papers authored by John R. Yates

Since Specialization

Citations

This map shows the geographic impact of John R. Yates's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by John R. Yates with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites John R. Yates more than expected).

Fields of papers citing papers by John R. Yates

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by John R. Yates. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by John R. Yates. The network helps show where John R. Yates may publish in the future.

Co-authorship network of co-authors of John R. Yates

This figure shows the co-authorship network connecting the top 25 collaborators of John R. Yates. A scholar is included among the top collaborators of John R. Yates based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with John R. Yates. John R. Yates is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Metarhizium anisopliae E6 secretome reveals molecular players in host specificity and toxicity linked to cattle tick infection 2023 ·Fungal Biology ·(unknown), Leonardo Broetto, (unknown), (unknown), (unknown), (unknown), (unknown), Alexandre José Macêdo, (unknown), Cristiano Valim Bizarro, Jorge A. Guimarães, John R. Yates, Lucélia Santi, Walter O. Beys‐da‐Silva	3
2	Exosomes regulate neurogenesis and circuit assembly 2019 ·Proceedings of the National Academy of Sciences ·Pranav Sharma, Pinar Mesci, Cassiano Carromeu, Daniel B. McClatchy, Lucio Schiapparelli, John R. Yates, Alysson R. Muotri, Hollis T. Cline	218
3	A Non-Dicer RNase III and Four Other Novel Factors Required for RNAi-Mediated Transposon Suppression in the Human Pathogenic Yeast Cryptococcus neoformans 2019 ·G3 Genes Genomes Genetics ·Jordan E. Burke, (unknown), (unknown), (unknown), John Liu, Jade Sales-Lee, (unknown), James J. Moresco, Jolene K. Diedrich, John R. Yates, Hiten D. Madhani	14
4	Regulated nuclear accumulation of a histone methyltransferase times the onset of heterochromatin formation in C. elegans embryos 2018 ·Science Advances ·Beste Mutlu, Huei-Mei Chen, James J. Moresco, (unknown), Bing Yang, John M. Gaspar, Sabine Keppler‐Ross, John R. Yates, David H. Hall, Eleanor M. Maine, Susan E. Mango	46
5	Sel1L is indispensable for mammalian endoplasmic reticulum-associated degradation, endoplasmic reticulum homeostasis, and survival 2014 ·Proceedings of the National Academy of Sciences ·Shengyi Sun, Guojun Shi, Xuemei Han, Adam B. Francisco, Yewei Ji, Nuno Mendonça, Xiaojing Liu, Jason W. Locasale, Kenneth W. Simpson, G Duhamel, Sander Kersten, John R. Yates, Qiaoming Long, Ling Qi	160
6	Regulation of ubiquitin-dependent cargo sorting by multiple endocytic adaptors at the plasma membrane 2013 ·Proceedings of the National Academy of Sciences ·Jonathan R. Mayers, Lei Wang, Jhuma Pramanik, Adam Johnson, Ali Sarkeshik, Yueju Wang, Witchuda Saengsawang, John R. Yates, Anjon Audhya	48
7	ALS-linked mutant superoxide dismutase 1 (SOD1) alters mitochondrial protein composition and decreases protein import 2010 ·Proceedings of the National Academy of Sciences ·Quan Li, Christine Vande Velde, Adrian Israelson, Jing Xie, Aaron O. Bailey, (unknown), (unknown), (unknown), (unknown), John R. Yates, Roderick Capaldi, Don W. Cleveland, Timothy M. Miller	141
8	Combined Integrin Phosphoproteomic Analyses and Small Interfering RNA–Based Functional Screening Identify Key Regulators for Cancer Cell Adhesion and Migration 2009 ·Cancer Research ·Yanling Chen, Bingwen Lu, Qingkai Yang, Colleen Fearns, John R. Yates, Jiing‐Dwan Lee	88
9	Jmjd6 Catalyses Lysyl-Hydroxylation of U2AF65, a Protein Associated with RNA Splicing 2009 ·Science ·Celia J. Webby, Alexander Wolf, Natalia Gromak, Mathias Dreger, Holger Kramer, Benedikt M. Kessler, Michael L. Nielsen, Corinna Schmitz, Danica Butler, John R. Yates, Claire Delahunty, (unknown), Andreas Lengeling, Matthias Mann, Nicholas Proudfoot, Christopher J. Schofield, Angelika Böttger	315
10	PYR/PYL/RCAR family members are major in‐vivo ABI1 protein phosphatase 2C‐interacting proteins in Arabidopsis 2009 ·The Plant Journal ·Noriyuki Nishimura, Ali Sarkeshik, Kazumasa Nito, Sang‐Youl Park, (unknown), Paulo C. Carvalho, (unknown), Daniel Caddell, Sean R. Cutler, Joanne Chory, John R. Yates, Julian I. Schroeder	387
11	Bora and the Kinase Aurora A Cooperatively Activate the Kinase Plk1 and Control Mitotic Entry 2008 ·Science ·Akiko Seki, Judith A. Coppinger, Chang‐Young Jang, John R. Yates, Guowei Fang	491
12	Interaction of the Tumor Metastasis Suppressor Nonmetastatic Protein 23 Homologue H1 and Estrogen Receptor α Alters Estrogen-Responsive Gene Expression 2007 ·Cancer Research ·Carol D. Curtis, Varsha S. Likhite, Ian X. McLeod, John R. Yates, Ann M. Nardulli	49
13	Quantitative Mass Spectrometry Identifies Insulin Signaling Targets in C. elegans 2007 ·Science ·Meng‐Qiu Dong, John D. Venable, (unknown), Tao Xu, Sung Kyu Park, Daniel Cociorva, Jeffrey R. Johnson, Andrew Dillin, John R. Yates	266
14	Global aggregation of newly translated proteins in an Escherichia coli strain deficient of the chaperonin GroEL 2006 ·Proceedings of the National Academy of Sciences ·Eli Chapman, George W. Farr, Renata Usaite, Krystyna Furtak, Wayne A. Fenton, Tapan K. Chaudhuri, Elise R. Hondorp, Rowena G. Matthews, Sharon G. Wolf, John R. Yates, Marc Pypaert, Arthur L. Horwich	119
15	Arginylation of ß-Actin Regulates Actin Cytoskeleton and Cell Motility 2006 ·Science ·Marina V. Karakozova, Marina Kozak, Catherine C. L. Wong, Aaron O. Bailey, John R. Yates, Alexander Mogilner, Henry Zebroski, Anna Kashina	214
16	Rtn1p Is Involved in Structuring the Cortical Endoplasmic Reticulum 2006 ·Molecular Biology of the Cell ·Johan‐Owen De Craene, Jeff Coleman, (unknown), Marc Pypaert, Scott Anderson, John R. Yates, Susan Ferro‐Novick, Peter Novick	118
17	RNA-Dependent Cysteine Biosynthesis in Archaea 2005 ·Science ·Anselm Sauerwald, Wenhong Zhu, Tiffany A. Major, Hervé Roy, Sotiria Palioura, Dieter Jahn, William B. Whitman, John R. Yates, Michael Ibba, Dieter Söll	191
18	Acetylation by Tip60 Is Required for Selective Histone Variant Exchange at DNA Lesions breakdown → 2004 ·Science ·T Kusch, Laurence Florens, (unknown), Selene K. Swanson, Robert L. Glaser, John R. Yates, Susan M. Abmayr, Michael P. Washburn, Jerry L. Workman	539
19	Dissection of the Mammalian Midbody Proteome Reveals Conserved Cytokinesis Mechanisms 2004 ·Science ·Ahna R. Skop, Hongbin Liu, John R. Yates, Barbara J Meyer, Rebecca Heald	411
20	Role of Rpn11 Metalloprotease in Deubiquitination and Degradation by the 26 S Proteasome breakdown → 2002 ·Science ·Rati Verma, L. Aravind, Robert Oania, W. Hayes McDonald, John R. Yates, Eugene V. Koonin, Raymond J. Deshaies	810

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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