Jiarui Ding

9.8k citations

50 papers · 2.5k indexed · 1 hit paper · h-index 19

Impact in

Cancer Research top 2%
- Cancer Genomics and Diagnostics
Reproductive Medicine top 2%
- Ovarian cancer diagnosis and treatment

Papers in ⓘ

Biophysics 5
Cancer Research 8
- Cancer Genomics and Diagnostics 8

Co-authors: Sohrab P. Shah (18 shared papers)Anne Condon (4 shared papers)Aviv Regev (5 shared papers)David G. Huntsman (8 shared papers)Ali Bashashati (6 shared papers)Samuel Aparício (7 shared papers)Gavin Ha (6 shared papers)Yan Hu (1 shared paper)
Journals: Nature Communications (4 papers)Bioinformatics (3 papers)Modern Pathology (2 papers)Case Studies in Construction Materials (2 papers)Clinical Epigenetics (1 paper)
Partner nations: Canada China United States

In The Last Decade

Jiarui Ding

43 papers receiving 2.5k citations

Hit Papers

align trajectories log scale

Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin 2020 · 579 citations

Peers

Countries citing papers authored by Jiarui Ding

Since Specialization

Citations

This map shows the geographic impact of Jiarui Ding's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jiarui Ding with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jiarui Ding more than expected).

Fields of papers citing papers by Jiarui Ding

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jiarui Ding. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jiarui Ding. The network helps show where Jiarui Ding may publish in the future.

Co-authors

The 25 scholars most cited alongside Jiarui Ding, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Jiarui Ding Line = papers co-authored together Jiarui Ding links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 50 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin Cell ·Sai Ma, Bing Zhang, Lindsay M. LaFave, Andrew Earl, Zachary Chiang, Yan Hu, Jiarui Ding, Alison Brack, Vinay K. Kartha, Tristan Tay, Travis Law, Caleb A. Lareau, Ya-Chieh Hsu, Aviv Regev, Jason D. Buenrostro Hit paper breakdown →	2020	579
2	Use of mutation profiles to refine the classification of endometrial carcinomas The Journal of Pathology ·Melissa K. McConechy, Jiarui Ding, Maggie C.U. Cheang, Kimberly C. Wiegand, Janine Senz, Alicia Tone, Winnie Yang, Leah Prentice, Kane Tse, Thomas Zeng, Helen McDonald, Amy P. Schmidt, David G. Mutch, Jessica N. McAlpine, Martin Hirst, Sohrab P. Shah, Cheng‐Han Lee, Paul J. Goodfellow, C. Blake Gilks, David G. Huntsman	2012	246
3	Interpretable dimensionality reduction of single cell transcriptome data with deep generative models Nature Communications ·Jiarui Ding, Anne Condon, Sohrab P. Shah	2018	224
4	DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer Genome biology ·Ali Bashashati, Gholamreza Haffari, Jiarui Ding, Gavin Ha, Kenneth Lui, Jamie Rosner, David G. Huntsman, Carlos Caldas, Samuel Aparício, Sohrab P. Shah	2012	210
5	Ovarian and endometrial endometrioid carcinomas have distinct CTNNB1 and PTEN mutation profiles Modern Pathology ·Melissa K. McConechy, Jiarui Ding, Janine Senz, Winnie Yang, Nataliya Melnyk, Alicia Tone, Leah Prentice, Kimberly C. Wiegand, Jessica N. McAlpine, Sohrab P. Shah, Cheng‐Han Lee, Paul J. Goodfellow, C. Blake Gilks, David G. Huntsman	2013	186
6	Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer Genome Research ·Gavin Ha, Andrew Roth, Daniel Lai, Ali Bashashati, Jiarui Ding, Rodrigo Goya, Ryan Giuliany, Jamie Rosner, Arusha Oloumi, Karey Shumansky, Suet‐Feung Chin, Gulisa Turashvili, Martin Hirst, Carlos Caldas, Marco A. Marra, Samuel Aparício, Sohrab P. Shah	2012	152
7	BRCA1 and BRCA2 mutations correlate with TP53 abnormalities and presence of immune cell infiltrates in ovarian high-grade serous carcinoma Modern Pathology ·Jessica N. McAlpine, Henry Porter, Martin Köbel, Brad H. Nelson, Leah Prentice, Steve E. Kalloger, Janine Senz, Katy Milne, Jiarui Ding, Sohrab P. Shah, David G. Huntsman, C. Blake Gilks	2012	129
8	JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data Bioinformatics ·Andrew Roth, Jiarui Ding, Ryan D. Morin, Anamaria Crisan, Gavin Ha, Ryan Giuliany, Ali Bashashati, Martin Hirst, Gulisa Turashvili, Arusha Oloumi, Marco A. Marra, Samuel Aparício, Sohrab P. Shah	2012	117
9	Disruption of the IL-33-ST2-AKT signaling axis impairs neurodevelopment by inhibiting microglial metabolic adaptation and phagocytic function Immunity ·Danyang He, Heping Xu, Huiyuan Zhang, Ruihan Tang, Yangning Lan, Ruxiao Xing, Shaomin Li, Elena Christian, Yu Hou, Paul J. Lorello, Barbara J. Caldarone, Jiarui Ding, Lan Nguyễn, Danielle Dionne, Pratiksha I. Thakore, Alexandra Schnell, Jun R. Huh, Orit Rozenblatt–Rosen, Aviv Regev, Vijay K. Kuchroo	2022	94
10	Feature-based classifiers for somatic mutation detection in tumour–normal paired sequencing data Bioinformatics ·Jiarui Ding, Ali Bashashati, Andrew Roth, Arusha Oloumi, Kane Tse, Thomas Zeng, Gholamreza Haffari, Martin Hirst, Marco A. Marra, Anne Condon, Samuel Aparício, Sohrab P. Shah	2011	85
11	Systematic analysis of somatic mutations impacting gene expression in 12 tumour types Nature Communications ·Jiarui Ding, Melissa K. McConechy, Hugo M. Horlings, Gavin Ha, Fong Chun Chan, Tyler Funnell, Sarah C. Mullaly, Jüri Reimand, Ali Bashashati, Gary D. Bader, David G. Huntsman, Samuel Aparício, Anne Condon, Sohrab P. Shah	2015	69
12	Identification of the epigenetic reader CBX2 as a potential drug target in advanced prostate cancer Clinical Epigenetics ·Pier‐Luc Clermont, Francesco Crea, Yan Ting Chiang, Dong Lin, Amy Zhang, James Z. L. Wang, Abhijit Parolia, Rebecca Wu, Hui Xue, Yuwei Wang, Jiarui Ding, Kelsie L. Thu, Wan L. Lam, Sohrab P. Shah, Colin C. Collins, Yuzhuo Wang, Cheryl D. Helgason	2016	61
13	Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces Nature Communications ·Jiarui Ding, Aviv Regev	2021	53
14	Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas Genome Biology ·Anthony Mathelier, Calvin Lefebvre, Allen W. Zhang, David J. Arenillas, Jiarui Ding, Wyeth W. Wasserman, Sohrab P. Shah	2015	28
15	Temporal single-cell atlas of non-neuronal retinal cells reveals dynamic, coordinated multicellular responses to central nervous system injury Nature Immunology ·Inbal Benhar, Jiarui Ding, Wenjun Yan, Irene E. Whitney, Anne Jacobi, Malika Sud, Grace Burgin, Karthik Shekhar, Nicholas M. Tran, Chen Wang, Zhigang He, Joshua R. Sanes, Aviv Regev	2023	28
16	Intratumoral heterogeneity in a minority of ovarian low-grade serous carcinomas BMC Cancer ·Alicia Tone, Melissa K. McConechy, Winnie Yang, Jiarui Ding, Stephen Yip, Esther Kong, Kwong‐Kwok Wong, David M. Gershenson, Helen Mackay, Sohrab P. Shah, C. Blake Gilks, Anna V. Tinker, Blaise Clarke, Jessica N. McAlpine, David G. Huntsman	2014	26
17	densityCut: an efficient and versatile topological approach for automatic clustering of biological data Bioinformatics ·Jiarui Ding, Sohrab P. Shah, Anne Condon	2016	26
18	An esophagus cell atlas reveals dynamic rewiring during active eosinophilic esophagitis and remission Nature Communications ·Jiarui Ding, John J. Garber, Amiko M. Uchida, Ariel Lefkovith, Grace T. Carter, Praveen Vimalathas, Lauren Canha, Michael Dougan, Kyle Staller, Joseph C. Yarze, Toni Delorey, Orit Rozenblatt–Rosen, Orr Ashenberg, Daniel B. Graham, Jacques Deguine, Aviv Regev, Ramnik J. Xavier	2024	22
19	A novel approach to denoising ion trap tandem mass spectra Proteome Science ·Jiarui Ding, Jinhong Shi, Guy G. Poirier, Fang‐Xiang Wu	2009	21
20	SVM-RFE based feature selection for tandem mass spectrum quality assessment International Journal of Data Mining and Bioinformatics ·Jiarui Ding, Jinhong Shi, Fang‐Xiang Wu	2011	18

About Jiarui Ding

Jiarui Ding is a scholar working on Biophysics, Cancer Research, Spectroscopy, Analytical Chemistry and Molecular Biology, having authored 50 papers that have together received 2.5k indexed citations. Recurring topics across this work include Metabolomics and Mass Spectrometry Studies (10 papers), Cancer Genomics and Diagnostics (8 papers), Advanced Proteomics Techniques and Applications (7 papers), Gene expression and cancer classification (5 papers), Spectroscopy and Chemometric Analyses (4 papers), Single-cell and spatial transcriptomics (4 papers), Machine Learning in Bioinformatics (4 papers) and Wheat and Barley Genetics and Pathology (3 papers). The work is most often cited by research in Cancer Research (730 citations), Reproductive Medicine (335 citations), Biophysics (194 citations), Obstetrics and Gynecology (251 citations) and Molecular Biology (1.7k citations). Jiarui Ding has collaborated with scholars based in Canada, China and United States. Frequent co-authors include Sohrab P. Shah, Anne Condon, Aviv Regev, David G. Huntsman, Ali Bashashati, Samuel Aparício, Gavin Ha, Yan Hu, Jason D. Buenrostro and Lindsay M. LaFave. Their work appears in journals such as Nature Communications, Bioinformatics, Modern Pathology, Case Studies in Construction Materials and Clinical Epigenetics.

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