David J. Arenillas

7.0k citations

28 papers · 4.6k indexed · 4 hit papers · h-index 15

Molecular Biology top 2%
- Genomics and Chromatin Dynamics 14
- RNA and protein synthesis mechanisms 7
- RNA Research and Splicing 6
- Bioinformatics and Genomic Networks 5
- RNA modifications and cancer 5
- Genomics and Phylogenetic Studies 4
- Gene expression and cancer classification 4
Cancer Research top 2%
Aging top 5%
Genetics top 5%
- Genetic Associations and Epidemiology 2
Immunology top 5%

Co-authors: Wyeth W. Wasserman Boris Lenhard Albin Sandelin Anthony Mathelier Casper Shyr Ge Tan François Parcy Andrew Tae-Jun Kwon
Cited by: Molecular Biology Cancer Research Aging
Journals: Nucleic Acids Research (8 papers)Bioinformatics (1 paper)Scientific Reports (1 paper)
Partner nations: Canada Norway United Kingdom

In The Last Decade

David J. Arenillas

28 papers receiving 4.6k citations

Hit Papers

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What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

2017 Nucleic Acids Research
2015 Nucleic Acids Research
2013 Nucleic Acids Research
2010 Nucleic Acids Research

Peers

Countries citing papers authored by David J. Arenillas

Since Specialization

Citations

This map shows the geographic impact of David J. Arenillas's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by David J. Arenillas with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites David J. Arenillas more than expected).

Fields of papers citing papers by David J. Arenillas

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by David J. Arenillas. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by David J. Arenillas. The network helps show where David J. Arenillas may publish in the future.

Co-authorship network

The 25 scholars most cited alongside David J. Arenillas, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with David J. Arenillas Line = papers co-authored together David J. Arenillas links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	MANTA2, update of the Mongo database for the analysis of transcription factor binding site alterations Scientific Data ·Oriol Fornés,Marius Gheorghe,Phillip A. Richmond,David J. Arenillas,Wyeth W. Wasserman,Anthony Mathelier	2018	11
2	JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web frameworkbreakdown → Nucleic Acids Research ·Aziz Khan,Oriol Fornés,Arnaud Stigliani,Marius Gheorghe,Jaime A. Castro-Mondragón,Robin van der Lee,Adrien Bessy,Jeanne Chèneby,Shubhada R. Kulkarni,Ge Tan,Damir Baranas̆ić,David J. Arenillas,Albin Sandelin,Klaas Vandepoele,Boris Lenhard,Benoît Ballester,Wyeth W. Wasserman,François Parcy,Anthony Mathelier	2017	1071
3	YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses Scientific Reports ·Chih‐Yu Chen,Wenqiang Shi,Bradley P. Balaton,Allison Matthews,Yifeng Li,David J. Arenillas,Anthony Mathelier,Masayoshi Itoh,Hideya Kawaji,Timo Lassmann,Yoshihide Hayashizaki,Piero Carninci,Alistair R. R. Forrest,Carolyn J. Brown,Wyeth W. Wasserman	2016	30
4	PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina Molecular Therapy — Methods & Clinical Development ·Jack W. Hickmott,Chih‐Yu Chen,David J. Arenillas,Andrea J. Korecki,Siu Ling Lam,Laurie L. Molday,Russell J. Bonaguro,Michelle Zhou,Alice Chou,Anthony Mathelier,Sanford L. Boye,William W. Hauswirth,Robert S. Molday,Wyeth W. Wasserman,Elizabeth M. Simpson	2016	15
5	CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs Bioinformatics ·David J. Arenillas,Alistair R. R. Forrest,Hideya Kawaji,Timo Lassmann,Wyeth W. Wasserman,Anthony Mathelier	2016	5
6	Combined serial analysis of gene expression and transcription factor binding site prediction identifies novel-candidate-target genes of Nr2e1 in neocortex development BMC Genomics ·Jean-François Schmouth,David J. Arenillas,Ximena Corso‐Díaz,Yuanyun Xie,Slavita Bohacec,Kathleen G. Banks,Russell J. Bonaguro,Siaw H. Wong,Steven J.M. Jones,Marco A. Marra,Elizabeth M. Simpson,Wyeth W. Wasserman	2015	7
7	JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profilesbreakdown → Nucleic Acids Research ·Anthony Mathelier,Oriol Fornés,David J. Arenillas,Chih‐Yu Chen,Grégoire Denay,Jessica Lee,Wenqiang Shi,Casper Shyr,Ge Tan,Rebecca Worsley-Hunt,Allen W. Zhang,François Parcy,Boris Lenhard,Albin Sandelin,Wyeth W. Wasserman	2015	725
8	Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas Genome Biology ·Anthony Mathelier,Calvin Lefebvre,Allen W. Zhang,David J. Arenillas,Jiarui Ding,Wyeth W. Wasserman,Sohrab P. Shah	2015	28
9	JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profilesbreakdown → Nucleic Acids Research ·Anthony Mathelier,Xiaobei Zhao,Allen W. Zhang,François Parcy,Rebecca Worsley-Hunt,David J. Arenillas,Sorana Buchman,Chih‐Yu Chen,Alice Chou,Hans Ienasescu,Jonathan Lim,Casper Shyr,Ge Tan,Michelle Zhou,Boris Lenhard,Albin Sandelin,Wyeth W. Wasserman	2013	801
10	MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model BMC Bioinformatics ·Antony Le Béchec,Élodie Portales-Casamar,Guillaume Vetter,Michèle Moes,Pierre-Joachim Zindy,Anne Saumet,David J. Arenillas,Charles Theillet,Wyeth W. Wasserman,Charles‐Henri Lecellier,Evelyne Friederich	2011	56
11	Validation of Skeletal Muscle cis-Regulatory Module Predictions Reveals Nucleotide Composition Bias in Functional Enhancers PLoS Computational Biology ·Andrew Tae-Jun Kwon,Alice Chou,David J. Arenillas,Wyeth W. Wasserman	2011	7
12	Global mapping of binding sites for Nrf2 identifies novel targets in cell survival response through ChIP-Seq profiling and network analysisbreakdown → Nucleic Acids Research ·Deepti Malhotra,Élodie Portales-Casamar,Anju Singh,Siddhartha Srivastava,David J. Arenillas,Christine Happel,Casper Shyr,Nobunao Wakabayashi,Thomas W. Kensler,Wyeth W. Wasserman,Shyam Biswal	2010	632
13	Systems biology evaluation of immune responses induced by human host defence peptide LL-37 in mononuclear cells Molecular BioSystems ·Neeloffer Mookherjee,Pamela Hamill,Jennifer L. Gardy,Darren Blimkie,Reza Falsafi,Avinash Chikatamarla,David J. Arenillas,Silvana Doria,Tobias R. Kollmann,Robert E. W. Hancock	2009	82
14	JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles Nucleic Acids Research ·Élodie Portales-Casamar,Supat Thongjuea,Andrew Tae-Jun Kwon,David J. Arenillas,Xiaobei Zhao,Eivind Valen,Dimas Yusuf,Boris Lenhard,Wyeth W. Wasserman,Albin Sandelin	2009	469
15	In Silico Detection of Sequence Variations Modifying Transcriptional Regulation PLoS Computational Biology ·Malin Andersen,Pär G. Engström,Stuart Lithwick,David J. Arenillas,Per Eriksson,Boris Lenhard,Wyeth W. Wasserman,Jacob Odeberg	2008	82
16	The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences Nucleic Acids Research ·Élodie Portales-Casamar,David J. Arenillas,Jonathan W. C. Lim,Magdalena I. Swanson,Steven Jiang,Anthony McCallum,Stefan Kirov,Wyeth W. Wasserman	2008	83
17	Mechanisms underlying p53 regulation of PIK3CA transcription in ovarian surface epithelium and in ovarian cancer Journal of Cell Science ·Arezoo Astanehe,David J. Arenillas,Wyeth W. Wasserman,Peter C. K. Leung,Sandra E. Dunn,Barry R. Davies,Gordon B. Mills,Nelly Auersperg	2008	66
18	oPOSSUM: integrated tools for analysis of regulatory motif over-representation Nucleic Acids Research ·Shannan J. Ho Sui,Debra L. Fulton,David J. Arenillas,Andrew Tae-Jun Kwon,Wyeth W. Wasserman	2007	130
19	NovelFam3000 – Uncharacterized human protein domains conserved across model organisms BMC Genomics ·Danielle Kemmer,Raf M. Podowski,David J. Arenillas,Jonathan Lim,Emily Hodges,Peggy Roth,Erik L. L. Sonnhammer,Christer Höög,Wyeth W. Wasserman	2006	4
20	Complete functional rescue of the ABCA1−/− mouse by human BAC transgenesis Journal of Lipid Research ·Jonathan M. Coutinho,Roshni R. Singaraja,Martin H. Kang,David J. Arenillas,Lisa Bertram,Nagat Bissada,Bart Staels,Jean‐Charles Fruchart,Catherine Fiévet,Ann M. Joseph‐George,Wyeth W. Wasserman,Michael R. Hayden	2005	11

About David J. Arenillas

David J. Arenillas is a scholar working on Molecular Biology, Cancer Research and Genetics, having authored 28 papers that have together received 4.6k indexed citations. Recurring topics across this work include Genomics and Chromatin Dynamics (14 papers), RNA and protein synthesis mechanisms (7 papers), RNA Research and Splicing (6 papers), Bioinformatics and Genomic Networks (5 papers), RNA modifications and cancer (5 papers), Genomics and Phylogenetic Studies (4 papers), Gene expression and cancer classification (4 papers) and Genetic Associations and Epidemiology (2 papers). The work is most often cited by research in Molecular Biology (3.7k citations), Cancer Research (734 citations) and Aging (67 citations). David J. Arenillas has collaborated with scholars based in Canada, Norway and United Kingdom. Frequent co-authors include Wyeth W. Wasserman, Boris Lenhard, Albin Sandelin, Anthony Mathelier, Casper Shyr, Ge Tan, François Parcy, Andrew Tae-Jun Kwon, Élodie Portales-Casamar and Oriol Fornés. Their work appears in journals such as Nucleic Acids Research, Bioinformatics and Scientific Reports.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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