Jason D. Buenrostro

31.1k total citations · 8 hit papers
67 papers, 14.2k citations indexed

About

Jason D. Buenrostro is a scholar working on Molecular Biology, Cancer Research and Immunology. According to data from OpenAlex, Jason D. Buenrostro has authored 67 papers receiving a total of 14.2k indexed citations (citations by other indexed papers that have themselves been cited), including 58 papers in Molecular Biology, 15 papers in Cancer Research and 11 papers in Immunology. Recurrent topics in Jason D. Buenrostro's work include Single-cell and spatial transcriptomics (28 papers), Epigenetics and DNA Methylation (19 papers) and Genomics and Chromatin Dynamics (18 papers). Jason D. Buenrostro is often cited by papers focused on Single-cell and spatial transcriptomics (28 papers), Epigenetics and DNA Methylation (19 papers) and Genomics and Chromatin Dynamics (18 papers). Jason D. Buenrostro collaborates with scholars based in United States, China and Germany. Jason D. Buenrostro's co-authors include William J. Greenleaf, Howard Y. Chang, Beijing Wu, Lisa C. Zaba, Paul G. Giresi, Alicia N. Schep, M Snyder, Caleb A. Lareau, Ulrike Litzenburger and Michael L. Gonzales and has published in prestigious journals such as Nature, Science and Cell.

In The Last Decade

Jason D. Buenrostro

66 papers receiving 14.1k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

2013 3.9k citations Jason D. Buenrostro, William J. Greenleaf et al. Nature Methods profile →
ATAC‐seq: A Method for Assaying Chromatin Accessibility Genome‐Wide

2015 2.0k citations Jason D. Buenrostro, William J. Greenleaf et al. profile →
Single-cell chromatin accessibility reveals principles of regulatory variation

2015 1.5k citations Jason D. Buenrostro, William J. Greenleaf et al. Nature profile →
chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data

2017 770 citations Jason D. Buenrostro, William J. Greenleaf et al. Nature Methods profile →
Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution

2016 656 citations Jason D. Buenrostro, William J. Greenleaf et al. Nature Genetics profile →
Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin

2020 579 citations Sai Ma, Lindsay M. LaFave et al. profile →
Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation

2018 397 citations Jason D. Buenrostro, Caleb A. Lareau et al. profile →
Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics

2019 325 citations Leif S. Ludwig, Caleb A. Lareau et al. profile →

Peers

Jason D. Buenrostro

IMMUN

GENET

ONCOL

Rickard Sandberg Sweden

Peter V. Kharchenko United States

Fuchou Tang China

Michael Boutros Germany

Stein Aerts Belgium

Tim Stuart United States

Itay Tirosh Israel

Christoph Hafemeister United States

Neville E. Sanjana United States

Thierry Voet Belgium

Rickard Sandberg Sweden

Jason D. Buenrostro

18.1k ×1.6

4.7k ×1.9

2.8k ×1.2

IMMUN

2.3k ×1.6

GENET

1.6k ×1.5

ONCOL

Citations per year, relative to Jason D. Buenrostro Jason D. Buenrostro (= 1×) peers Rickard Sandberg

Countries citing papers authored by Jason D. Buenrostro

Since Specialization

Citations

This map shows the geographic impact of Jason D. Buenrostro's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jason D. Buenrostro with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jason D. Buenrostro more than expected).

Fields of papers citing papers by Jason D. Buenrostro

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jason D. Buenrostro. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jason D. Buenrostro. The network helps show where Jason D. Buenrostro may publish in the future.

Co-authorship network of co-authors of Jason D. Buenrostro

This figure shows the co-authorship network connecting the top 25 collaborators of Jason D. Buenrostro. A scholar is included among the top collaborators of Jason D. Buenrostro based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jason D. Buenrostro. Jason D. Buenrostro is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Nagaraja, Surya, et al.. (2026). Epigenetic memory of colitis promotes tumour growth. Nature.

Martens, Laura D., Alexander Karollus, Trevor Manz, et al.. (2025). scooby: modeling multimodal genomic profiles from DNA sequence at single-cell resolution. Nature Methods. 22(11). 2275–2285. 1 indexed citations

Issner, Robbyn, Nauman Javed, Jason D. Buenrostro, et al.. (2025). Multi-locus CRISPRi targeting with a single truncated guide RNA. Nature Communications. 16(1). 1357–1357. 1 indexed citations

Labade, Ajay S., Zachary Chiang, Paul Reginato, et al.. (2025). Expansion in situ genome sequencing links nuclear abnormalities to aberrant chromatin regulation. Science. 389(6758). eadt2781–eadt2781. 2 indexed citations

Schiroli, Giulia, Vinay K. Kartha, Fabiana M. Duarte, et al.. (2024). Cell of origin epigenetic priming determines susceptibility to Tet2 mutation. Nature Communications. 15(1). 4325–4325. 3 indexed citations

Papathanasiou, Stamatis, Shiwei Liu, Gregory J. Brunette, et al.. (2023). Heritable transcriptional defects from aberrations of nuclear architecture. Nature. 619(7968). 184–192. 42 indexed citations

Mangiameli, Sarah, et al.. (2023). Photoselective sequencing: microscopically guided genomic measurements with subcellular resolution. Nature Methods. 20(5). 686–694. 7 indexed citations

Kartha, Vinay K., Fabiana M. Duarte, Yan Hu, et al.. (2022). Functional inference of gene regulation using single-cell multi-omics. Cell Genomics. 2(9). 100166–100166. 101 indexed citations

Yuan, Wen, Sai Ma, Juliana Brown, et al.. (2022). Temporally divergent regulatory mechanisms govern neuronal diversification and maturation in the mouse and marmoset neocortex. Nature Neuroscience. 25(8). 1049–1058. 20 indexed citations

10.

Payne, Andrew C., Zachary Chiang, Paul Reginato, et al.. (2021). In situ genome sequencing resolves DNA sequence and structure in intact biological samples. Science. 371(6532). 141 indexed citations

11.

Choi, Sekyu, Bing Zhang, Sai Ma, et al.. (2021). Corticosterone inhibits GAS6 to govern hair follicle stem-cell quiescence. Nature. 592(7854). 428–432. 107 indexed citations

12.

Zhao, Tongtong, Zachary Chiang, Julia W. Morriss, et al.. (2021). Spatial genomics enables multi-modal study of clonal heterogeneity in tissues. Nature. 601(7891). 85–91. 155 indexed citations

13.

Meißner, Torsten, Fang Wang, Ziming Du, et al.. (2021). ELF3 activated by a superenhancer and an autoregulatory feedback loop is required for high-level HLA-C expression on extravillous trophoblasts. Proceedings of the National Academy of Sciences. 118(9). 17 indexed citations

14.

Avagyan, Serine, M. Weber, Sai Ma, et al.. (2021). Single-cell ATAC-seq reveals GATA2-dependent priming defect in myeloid and a maturation bottleneck in lymphoid lineages. Blood Advances. 5(13). 2673–2686. 18 indexed citations

15.

Amitai, Assaf, Jason D. Buenrostro, Aditi Chakrabarti, et al.. (2020). Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields. Molecular Cell. 79(6). 881–901. 38 indexed citations

16.

Lareau, Caleb A., Leif S. Ludwig, Christoph Muus, et al.. (2020). Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling. Nature Biotechnology. 39(4). 451–461. 178 indexed citations

17.

Ulirsch, Jacob C., Caleb A. Lareau, Erik L. Bao, et al.. (2019). Interrogation of human hematopoiesis at single-cell and single-variant resolution. Nature Genetics. 51(4). 683–693. 102 indexed citations

18.

Lareau, Caleb A., Fabiana M. Duarte, Jennifer Chew, et al.. (2019). Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility. Nature Biotechnology. 37(8). 916–924. 279 indexed citations

19.

Shema, Efrat, B Bernstein, & Jason D. Buenrostro. (2018). Single-cell and single-molecule epigenomics to uncover genome regulation at unprecedented resolution. Nature Genetics. 51(1). 19–25. 126 indexed citations

20.

Miller, Erik L., Diana C. Hargreaves, Cigall Kadoch, et al.. (2017). TOP2 synergizes with BAF chromatin remodeling for both resolution and formation of facultative heterochromatin. Nature Structural & Molecular Biology. 24(4). 344–352. 64 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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