Aviv Regev

965 total papers · 220.5k total citations
319 papers, 80.0k citations indexed

About

Aviv Regev is a scholar working on Molecular Biology, Immunology and Cancer Research. According to data from OpenAlex, Aviv Regev has authored 319 papers receiving a total of 80.0k indexed citations (citations by other indexed papers that have themselves been cited), including 250 papers in Molecular Biology, 70 papers in Immunology and 42 papers in Cancer Research. Recurrent topics in Aviv Regev's work include Single-cell and spatial transcriptomics (92 papers), RNA Research and Splicing (45 papers) and Immune Cell Function and Interaction (32 papers). Aviv Regev is often cited by papers focused on Single-cell and spatial transcriptomics (92 papers), RNA Research and Splicing (45 papers) and Immune Cell Function and Interaction (32 papers). Aviv Regev collaborates with scholars based in United States, Israel and Germany. Aviv Regev's co-authors include Rahul Satija, Eric S. Lander, John L. Rinn, Nir Friedman, Alexander F. Schier, Jeffrey A. Farrell, David Gennert, Feng Zhang, Mitchell Guttman and Manuel Garber and has published in prestigious journals such as Nature, Science and New England Journal of Medicine.

In The Last Decade

Aviv Regev

308 papers receiving 79.0k citations

Hit Papers

Highly Parallel Genome-wi... 2003 2026 2010 2018 2015 2015 2015 2009 2011 1000 2.0k 3.0k 4.0k
What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation benchmark for papers published in the same subfield and year, or reaches the top citation threshold in at least one of its specific research topics.

  1. Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
    2015 4.5k citations Evan Z. Macosko, Anindita Basu et al. Cell profile →
  2. Spatial reconstruction of single-cell gene expression data
    2015 3.6k citations Rahul Satija, Jeffrey A. Farrell et al. Nature Biotechnology profile →
  3. Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System
    2015 3.4k citations Bernd Zetsche, Jonathan S. Gootenberg et al. Cell profile →
  4. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
    2009 3.3k citations Mitchell Guttman, Ido Amit et al. Nature profile →
  5. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    2011 2.7k citations Moran N. Cabili, Cole Trapnell et al. Genes & Development profile →
  6. Nucleic acid detection with CRISPR-Cas13a/C2c2
    2017 2.6k citations Jonathan S. Gootenberg, Omar O. Abudayyeh et al. Science profile →
  7. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
    2009 2.3k citations Ahmad M. Khalil, Mitchell Guttman et al. Proceedings of the National Academy of Sciences profile →
  8. An embryonic stem cell–like gene expression signature in poorly differentiated aggressive human tumors
    2008 2.0k citations Ittai Ben‐Porath, Matthew Thomson et al. Nature Genetics profile →
  9. A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response
    2010 1.7k citations Maite Huarte, Mitchell Guttman et al. Cell profile →
  10. C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector
    2016 1.7k citations Omar O. Abudayyeh, Jonathan S. Gootenberg et al. Science profile →
  11. lincRNAs act in the circuitry controlling pluripotency and differentiation
    2011 1.5k citations Mitchell Guttman, Julie Donaghey et al. Nature profile →
  12. Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer
    2017 1.5k citations Sidharth V. Puram, Itay Tirosh et al. Cell profile →
  13. RNA targeting with CRISPR–Cas13
    2017 1.5k citations Omar O. Abudayyeh, Jonathan S. Gootenberg et al. Nature profile →
  14. Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data
    2003 1.2k citations Eran Segal, Michal Shapira et al. Nature Genetics profile →
  15. The Human Cell Atlas
    2017 1.1k citations Aviv Regev, Sarah A. Teichmann et al. Zurich Open Repository and Archive (University of Zurich) profile →
  16. Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens
    2016 996 citations Atray Dixit, Oren Parnas et al. Cell profile →
  17. Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5′ Sites
    2014 967 citations Schraga Schwartz, Maxwell R. Mumbach et al. Cell Reports profile →
  18. Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
    2010 951 citations Mitchell Guttman, Manuel Garber et al. Nature Biotechnology profile →
  19. Induction and molecular signature of pathogenic TH17 cells
    2012 910 citations Youjin Lee, Amit Awasthi et al. Nature Immunology profile →
  20. Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells
    2013 849 citations Alex K. Shalek, Rahul Satija et al. Nature profile →
  21. Induction of pathogenic TH17 cells by inducible salt-sensing kinase SGK1
    2013 808 citations Chuan Wu, Nir Yosef et al. Nature profile →
  22. Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA
    2014 756 citations Schraga Schwartz, Douglas A. Bernstein et al. Cell profile →
  23. A unique regulatory phase of DNA methylation in the early mammalian embryo
    2012 752 citations Zachary D. Smith, Michelle M. Chan et al. Nature profile →
  24. CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq
    2016 738 citations Tamar Hashimshony, Naftalie Senderovich et al. Genome biology profile →
  25. Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region
    2018 737 citations Jeffrey R. Moffitt, Dhananjay Bambah-Mukku et al. Science profile →
  26. Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics
    2016 715 citations Karthik Shekhar, Sylvain W. Lapan et al. Cell profile →
  27. High-definition spatial transcriptomics for in situ tissue profiling
    2019 692 citations Sanja Vicković, Gökçen Eraslan et al. Nature Methods profile →
  28. A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response
    2016 669 citations Britt Adamson, Thomas M. Norman et al. Cell profile →
  29. Individual brain organoids reproducibly form cell diversity of the human cerebral cortex
    2019 662 citations Silvia Velasco, Amanda J. Kedaigle et al. Nature profile →
  30. Landscape of X chromosome inactivation across human tissues
    2017 654 citations Taru Tukiainen, Alexandra–Chloé Villani et al. Nature profile →
  31. Massively parallel single-nucleus RNA-seq with DroNc-seq
    2017 628 citations Naomi Habib, Inbal Avraham‐Davidi et al. Nature Methods profile →
  32. Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
    2011 627 citations Andrea Pauli, Eivind Valen et al. Genome Research profile →
  33. Disease-associated astrocytes in Alzheimer’s disease and aging
    2020 568 citations Naomi Habib, Cristin McCabe et al. Nature Neuroscience profile →
  34. Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin
    2020 560 citations Sai Ma, Bing Zhang et al. Cell profile →
  35. A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia
    2019 556 citations Ninib Baryawno, Dariusz Przybylski et al. Cell profile →
  36. Comprehensive comparative analysis of strand-specific RNA sequencing methods
    2010 531 citations Joshua Z. Levin, Moran Yassour et al. Nature Methods profile →
  37. Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution
    2015 524 citations Moran N. Cabili, Margaret C. Dunagin et al. Genome Biology profile →
  38. A module map showing conditional activity of expression modules in cancer
    2004 523 citations Eran Segal, Nir Friedman et al. Nature Genetics profile →
  39. High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis
    2013 497 citations Schraga Schwartz, Sudeep D. Agarwala et al. Cell profile →
  40. Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis
    2018 488 citations Jeffrey A. Farrell, Samantha J. Riesenfeld et al. Science profile →
  41. Scaling single-cell genomics from phenomenology to mechanism
    2017 483 citations Amos Tanay, Aviv Regev Nature profile →
  42. Temporal Tracking of Microglia Activation in Neurodegeneration at Single-Cell Resolution
    2017 482 citations Hansruedi Mathys, Chinnakkaruppan Adaikkan et al. Cell Reports profile →
  43. Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells
    2015 455 citations Monika S. Kowalczyk, Itay Tirosh et al. Genome Research profile →
  44. Single-cell transcriptomic profiling of the aging mouse brain
    2019 431 citations Methodios Ximerakis, Scott Lipnick et al. Nature Neuroscience profile →
  45. DNA methylation dynamics of the human preimplantation embryo
    2014 419 citations Zachary D. Smith, Michelle M. Chan et al. Nature profile →
  46. Revealing the vectors of cellular identity with single-cell genomics
    2016 398 citations Allon Wagner, Aviv Regev et al. Nature Biotechnology profile →
  47. Checkpoint Blockade Immunotherapy Induces Dynamic Changes in PD-1−CD8+ Tumor-Infiltrating T Cells
    2019 397 citations Sema Kurtuluş, Asaf Madi et al. Immunity profile →
  48. Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming
    2019 396 citations Geoffrey Schiebinger, Jian Shu et al. Cell profile →
  49. The Human Cell Atlas: from vision to reality
    2017 349 citations Orit Rozenblatt–Rosen, Michael J. T. Stubbington et al. Nature profile →
  50. Mitochondrial dysfunction remodels one-carbon metabolism in human cells
    2016 330 citations Xiaoyan Bao, Shao‐En Ong et al. eLife profile →
  51. The Human and Mouse Enteric Nervous System at Single-Cell Resolution
    2020 327 citations Eugene Drokhlyansky, Christopher S. Smillie et al. Cell profile →
  52. Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics
    2019 323 citations Leif S. Ludwig, Caleb A. Lareau et al. Cell profile →
  53. Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina
    2019 285 citations Yi‐Rong Peng, Karthik Shekhar et al. Cell profile →
  54. Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6
    2017 255 citations Joo‐Hyeon Lee, Tuomas Tammela et al. Cell profile →
  55. TIM-3 restrains anti-tumour immunity by regulating inflammasome activation
    2021 251 citations Karen O. Dixon, Marcin Tabaka et al. Nature profile →
  56. snRNA-seq reveals a subpopulation of adipocytes that regulates thermogenesis
    2020 226 citations Wenfei Sun, Hua Dong et al. Nature profile →
  57. CAR T cell killing requires the IFNγR pathway in solid but not liquid tumours
    2022 221 citations Rebecca C. Larson, Michael C. Kann et al. Nature profile →
  58. Molecular logic of cellular diversification in the mouse cerebral cortex
    2021 202 citations Daniela J. Di Bella, Ehsan Habibi et al. Nature profile →
  59. Spatial components of molecular tissue biology
    2022 169 citations Giovanni Palla, David S. Fischer et al. Nature Biotechnology profile →
  60. The evolution, evolvability and engineering of gene regulatory DNA
    2022 127 citations Eeshit Dhaval Vaishnav, Carl G. de Boer et al. Nature profile →
  61. A transcription factor atlas of directed differentiation
    2023 93 citations Julia Joung, Sai Ma et al. Cell profile →

Author Peers

Peers are selected by citation overlap in the author's most active subfields. citations · hero ref

Author Last Decade Papers Cites
Aviv Regev 61.3k 20.3k 11.3k 7.3k 6.3k 319 80.0k
David M. Sabatini 71.4k 1.2× 12.8k 0.6× 10.4k 0.9× 9.5k 1.3× 5.8k 0.9× 256 100.6k
Todd R. Golub 76.7k 1.3× 27.5k 1.4× 11.6k 1.0× 18.8k 2.6× 7.3k 1.2× 228 113.3k
Wolfgang Huber 66.4k 1.1× 14.5k 0.7× 12.7k 1.1× 7.0k 1.0× 12.4k 2.0× 249 108.5k
Jill P. Mesirov 51.6k 0.8× 15.1k 0.7× 10.2k 0.9× 11.9k 1.6× 7.4k 1.2× 138 79.4k
Patrick O. Brown 85.4k 1.4× 24.6k 1.2× 6.7k 0.6× 20.1k 2.8× 14.8k 2.3× 271 120.9k
Cole Trapnell 58.5k 1.0× 16.6k 0.8× 9.5k 0.8× 4.3k 0.6× 9.3k 1.5× 102 84.5k
Ruedi Aebersold 86.5k 1.4× 5.6k 0.3× 8.5k 0.8× 9.0k 1.2× 6.4k 1.0× 783 117.3k
Howard Y. Chang 66.0k 1.1× 40.3k 2.0× 8.3k 0.7× 7.2k 1.0× 5.5k 0.9× 347 82.9k
Jonathan S. Weissman 67.3k 1.1× 7.0k 0.3× 3.9k 0.3× 3.0k 0.4× 8.2k 1.3× 291 78.2k
Gordon K. Smyth 69.3k 1.1× 20.5k 1.0× 18.4k 1.6× 14.0k 1.9× 13.1k 2.1× 343 121.3k

Countries citing papers authored by Aviv Regev

Since Specialization
Citations

This map shows the geographic impact of Aviv Regev's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Aviv Regev with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Aviv Regev more than expected).

Fields of papers citing papers by Aviv Regev

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Aviv Regev. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Aviv Regev. The network helps show where Aviv Regev may publish in the future.

Co-authorship network of co-authors of Aviv Regev

This figure shows the co-authorship network connecting the top 25 collaborators of Aviv Regev. A scholar is included among the top collaborators of Aviv Regev based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Aviv Regev. Aviv Regev is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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