Aviv Regev

224.3k total citations · 61 hit papers
319 papers, 80.8k citations indexed

About

Aviv Regev is a scholar working on Molecular Biology, Immunology and Cancer Research. According to data from OpenAlex, Aviv Regev has authored 319 papers receiving a total of 80.8k indexed citations (citations by other indexed papers that have themselves been cited), including 250 papers in Molecular Biology, 70 papers in Immunology and 42 papers in Cancer Research. Recurrent topics in Aviv Regev's work include Single-cell and spatial transcriptomics (92 papers), RNA Research and Splicing (45 papers) and Immune Cell Function and Interaction (32 papers). Aviv Regev is often cited by papers focused on Single-cell and spatial transcriptomics (92 papers), RNA Research and Splicing (45 papers) and Immune Cell Function and Interaction (32 papers). Aviv Regev collaborates with scholars based in United States, Israel and Germany. Aviv Regev's co-authors include Rahul Satija, Eric S. Lander, John L. Rinn, Nir Friedman, Alexander F. Schier, Jeffrey A. Farrell, David Gennert, Feng Zhang, Mitchell Guttman and Manuel Garber and has published in prestigious journals such as Nature, Science and New England Journal of Medicine.

In The Last Decade

Aviv Regev

309 papers receiving 79.8k citations

Hit Papers

Highly Parallel Genome-wi... 2003 2026 2010 2018 2015 2015 2015 2009 2011 1000 2.0k 3.0k 4.0k
What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

  1. Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
    2015 4.6k citations Rahul Satija, Karthik Shekhar et al. profile →
  2. Spatial reconstruction of single-cell gene expression data
    2015 3.7k citations Rahul Satija, Jeffrey A. Farrell et al. Nature Biotechnology profile →
  3. Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System
    2015 3.4k citations Jonathan S. Gootenberg, Omar O. Abudayyeh et al. profile →
  4. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
    2009 3.3k citations Mitchell Guttman, Ido Amit et al. Nature profile →
  5. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    2011 2.7k citations Aviv Regev, John L. Rinn et al. profile →
  6. Nucleic acid detection with CRISPR-Cas13a/C2c2
    2017 2.7k citations Jonathan S. Gootenberg, Omar O. Abudayyeh et al. Science profile →
  7. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
    2009 2.3k citations Ahmad M. Khalil, Mitchell Guttman et al. Proceedings of the National Academy of Sciences profile →
  8. An embryonic stem cell–like gene expression signature in poorly differentiated aggressive human tumors
    2008 2.0k citations Aviv Regev et al. profile →
  9. C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector
    2016 1.7k citations Omar O. Abudayyeh, Jonathan S. Gootenberg et al. Science profile →
  10. A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response
    2010 1.7k citations Maite Huarte, Mitchell Guttman et al. profile →
  11. Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer
    2017 1.5k citations Itay Tirosh, Anoop P. Patel et al. profile →
  12. lincRNAs act in the circuitry controlling pluripotency and differentiation
    2011 1.5k citations Mitchell Guttman, Manuel Garber et al. Nature profile →
  13. RNA targeting with CRISPR–Cas13
    2017 1.5k citations Omar O. Abudayyeh, Jonathan S. Gootenberg et al. Nature profile →
  14. Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data
    2003 1.2k citations Aviv Regev et al. profile →
  15. The Human Cell Atlas
    2017 1.1k citations Aviv Regev, Eric S. Lander et al. profile →
  16. Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens
    2016 1.0k citations Raktima Raychowdhury, Eric S. Lander et al. profile →
  17. Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5′ Sites
    2014 978 citations Schraga Schwartz, Maxwell R. Mumbach et al. profile →
  18. Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
    2010 952 citations Mitchell Guttman, Manuel Garber et al. Nature Biotechnology profile →
  19. Induction and molecular signature of pathogenic TH17 cells
    2012 914 citations Nir Yosef, Aviv Regev et al. profile →
  20. Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells
    2013 853 citations Alex K. Shalek, Rahul Satija et al. Nature profile →
  21. Induction of pathogenic TH17 cells by inducible salt-sensing kinase SGK1
    2013 813 citations Nir Yosef, Aviv Regev et al. Nature profile →
  22. Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA
    2014 759 citations Schraga Schwartz, Maxwell R. Mumbach et al. profile →
  23. A unique regulatory phase of DNA methylation in the early mammalian embryo
    2012 754 citations Aviv Regev et al. Nature profile →
  24. Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region
    2018 750 citations Jeffrey R. Moffitt, Dhananjay Bambah-Mukku et al. Science profile →
  25. CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq
    2016 744 citations Dave Gennert, Orit Rozenblatt–Rosen et al. profile →
  26. Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics
    2016 722 citations Karthik Shekhar, Xian Adiconis et al. profile →
  27. High-definition spatial transcriptomics for in situ tissue profiling
    2019 705 citations Sanja Vicković, Gökçen Eraslan et al. Nature Methods profile →
  28. A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response
    2016 690 citations Aviv Regev, Jonathan S. Weissman et al. profile →
  29. Individual brain organoids reproducibly form cell diversity of the human cerebral cortex
    2019 672 citations Silvia Velasco, Amanda J. Kedaigle et al. Nature profile →
  30. Landscape of X chromosome inactivation across human tissues
    2017 665 citations Rahul Satija, Aviv Regev et al. Nature profile →
  31. Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
    2011 630 citations Manuel Garber, Joshua Z. Levin et al. profile →
  32. Massively parallel single-nucleus RNA-seq with DroNc-seq
    2017 630 citations Naomi Habib, Inbal Avraham‐Davidi et al. Nature Methods profile →
  33. Disease-associated astrocytes in Alzheimer’s disease and aging
    2020 587 citations Naomi Habib, Lan Nguyễn et al. profile →
  34. Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin
    2020 579 citations Travis Law, Aviv Regev et al. profile →
  35. A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia
    2019 558 citations Dariusz Przybylski, Matan Hofree et al. profile →
  36. Comprehensive comparative analysis of strand-specific RNA sequencing methods
    2010 533 citations Joshua Z. Levin, Xian Adiconis et al. Nature Methods profile →
  37. Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution
    2015 528 citations Aviv Regev, John L. Rinn et al. profile →
  38. A module map showing conditional activity of expression modules in cancer
    2004 524 citations Aviv Regev et al. profile →
  39. High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis
    2013 503 citations Schraga Schwartz, Maxwell R. Mumbach et al. profile →
  40. Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis
    2018 501 citations Jeffrey A. Farrell, Samantha J. Riesenfeld et al. Science profile →
  41. Scaling single-cell genomics from phenomenology to mechanism
    2017 487 citations Amos Tanay, Aviv Regev Nature profile →
  42. Temporal Tracking of Microglia Activation in Neurodegeneration at Single-Cell Resolution
    2017 486 citations Aviv Regev et al. profile →
  43. Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells
    2015 463 citations Itay Tirosh, Aviv Regev et al. profile →
  44. Single-cell transcriptomic profiling of the aging mouse brain
    2019 439 citations Sean Simmons, Xian Adiconis et al. profile →
  45. DNA methylation dynamics of the human preimplantation embryo
    2014 422 citations Aviv Regev et al. Nature profile →
  46. Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming
    2019 409 citations Joshua Gould, Aviv Regev et al. profile →
  47. Checkpoint Blockade Immunotherapy Induces Dynamic Changes in PD-1−CD8+ Tumor-Infiltrating T Cells
    2019 401 citations Orit Rozenblatt–Rosen, Aviv Regev et al. profile →
  48. Revealing the vectors of cellular identity with single-cell genomics
    2016 401 citations Aviv Regev, Nir Yosef et al. Nature Biotechnology profile →
  49. The Human Cell Atlas: from vision to reality
    2017 354 citations Orit Rozenblatt–Rosen, Aviv Regev et al. Nature profile →
  50. The Human and Mouse Enteric Nervous System at Single-Cell Resolution
    2020 337 citations Christopher S. Smillie, Gabriel K. Griffin et al. profile →
  51. Mitochondrial dysfunction remodels one-carbon metabolism in human cells
    2016 333 citations Dawn Thompson, Aviv Regev et al. profile →
  52. Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics
    2019 325 citations Travis Law, Nir Hacohen et al. profile →
  53. Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods
    2019 302 citations Nathalie Pochet, Aviv Regev et al. profile →
  54. Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina
    2019 290 citations Karthik Shekhar, Aviv Regev et al. profile →
  55. Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6
    2017 256 citations Matan Hofree, Aviv Regev et al. profile →
  56. TIM-3 restrains anti-tumour immunity by regulating inflammasome activation
    2021 255 citations Orit Rozenblatt–Rosen, Aviv Regev et al. Nature profile →
  57. snRNA-seq reveals a subpopulation of adipocytes that regulates thermogenesis
    2020 232 citations Aviv Regev et al. Nature profile →
  58. CAR T cell killing requires the IFNγR pathway in solid but not liquid tumours
    2022 225 citations Rebecca C. Larson, Michael C. Kann et al. Nature profile →
  59. Molecular logic of cellular diversification in the mouse cerebral cortex
    2021 204 citations Gabriele Scalia, Sung Min Yang et al. Nature profile →
  60. Spatial components of molecular tissue biology
    2022 174 citations Aviv Regev et al. Nature Biotechnology profile →
  61. The evolution, evolvability and engineering of gene regulatory DNA
    2022 130 citations Xian Adiconis, Dawn Thompson et al. Nature profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Aviv Regev United States 129 61.9k 20.4k 11.4k 7.3k 6.4k 319 80.8k
David M. Sabatini United States 129 71.6k 1.2× 12.9k 0.6× 10.4k 0.9× 9.5k 1.3× 5.9k 0.9× 257 101.0k
Todd R. Golub United States 111 77.0k 1.2× 27.5k 1.3× 11.6k 1.0× 18.8k 2.6× 7.3k 1.1× 229 113.9k
Cole Trapnell United States 60 58.9k 1.0× 16.6k 0.8× 9.6k 0.8× 4.3k 0.6× 9.4k 1.5× 102 85.0k
Jill P. Mesirov United States 55 51.9k 0.8× 15.2k 0.7× 10.3k 0.9× 11.9k 1.6× 7.5k 1.2× 137 80.1k
Wolfgang Huber Germany 72 67.0k 1.1× 14.6k 0.7× 12.8k 1.1× 7.0k 1.0× 12.6k 2.0× 249 109.8k
Ruedi Aebersold Switzerland 160 86.7k 1.4× 5.6k 0.3× 8.5k 0.7× 9.0k 1.2× 6.4k 1.0× 783 117.7k
Patrick O. Brown United States 137 85.4k 1.4× 24.6k 1.2× 6.7k 0.6× 20.1k 2.7× 14.8k 2.3× 272 121.0k
Howard Y. Chang United States 125 66.3k 1.1× 40.5k 2.0× 8.4k 0.7× 7.2k 1.0× 5.5k 0.9× 350 83.5k
Jonathan S. Weissman United States 131 67.8k 1.1× 7.0k 0.3× 3.9k 0.3× 3.0k 0.4× 8.2k 1.3× 292 78.7k
Rahul Satija United States 45 28.8k 0.5× 7.0k 0.3× 11.1k 1.0× 4.9k 0.7× 2.5k 0.4× 71 41.3k

Countries citing papers authored by Aviv Regev

Since Specialization
Citations

This map shows the geographic impact of Aviv Regev's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Aviv Regev with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Aviv Regev more than expected).

Fields of papers citing papers by Aviv Regev

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Aviv Regev. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Aviv Regev. The network helps show where Aviv Regev may publish in the future.

Co-authorship network of co-authors of Aviv Regev

This figure shows the co-authorship network connecting the top 25 collaborators of Aviv Regev. A scholar is included among the top collaborators of Aviv Regev based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Aviv Regev. Aviv Regev is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Heimberg, Graham, Tony Kuo, Daryle J. DePianto, et al.. (2024). A cell atlas foundation model for scalable search of similar human cells. Nature. 638(8052). 1085–1094. 30 indexed citations
2.
Lötstedt, Britta, Martin Stražar, Ramnik J. Xavier, Aviv Regev, & Sanja Vicković. (2023). Spatial host–microbiome sequencing reveals niches in the mouse gut. Nature Biotechnology. 42(9). 1394–1403. 64 indexed citations
3.
Pigoni, Martina, Ana Uzquiano, Bruna Paulsen, et al.. (2023). Cell-type specific defects inPTEN-mutant cortical organoids converge on abnormal circuit activity. Human Molecular Genetics. 32(18). 2773–2786. 13 indexed citations
4.
Larson, Rebecca C., Michael C. Kann, Stefanie R. Bailey, et al.. (2022). CAR T cell killing requires the IFNγR pathway in solid but not liquid tumours. Nature. 604(7906). 563–570. 225 indexed citations breakdown →
5.
Sullivan, Zuri A., William Khoury-Hanold, Jaechul Lim, et al.. (2021). γδ T cells regulate the intestinal response to nutrient sensing. Science. 371(6535). 82 indexed citations
6.
Jin, Xin, Sean Simmons, Ashwin S. Shetty, et al.. (2020). In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with autism risk genes. Science. 370(6520). 177 indexed citations
7.
Wang, Lingfei, Chih‐Hung Chou, Kai Liu, et al.. (2020). QRICH1 dictates the outcome of ER stress through transcriptional control of proteostasis. Science. 371(6524). 89 indexed citations
8.
Vicković, Sanja, Gökçen Eraslan, Fredrik Salmén, et al.. (2019). High-definition spatial transcriptomics for in situ tissue profiling. Nature Methods. 16(10). 987–990. 705 indexed citations breakdown →
9.
Gurjao, Carino, David Liu, Matan Hofree, et al.. (2019). Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair–Deficient Colorectal Cancer. Cancer Immunology Research. 7(8). 1230–1236. 60 indexed citations
10.
Farrell, Jeffrey A., et al.. (2018). Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis. Science. 360(6392). 501 indexed citations breakdown →
11.
Moffitt, Jeffrey R., Dhananjay Bambah-Mukku, Stephen W. Eichhorn, et al.. (2018). Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region. Science. 362(6416). 750 indexed citations breakdown →
12.
Abudayyeh, Omar O., Jonathan S. Gootenberg, Silvana Konermann, et al.. (2016). C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector. Science. 353(6299). aaf5573–aaf5573. 1689 indexed citations breakdown →
13.
Habib, Naomi, Yinqing Li, Matthias Heidenreich, et al.. (2016). Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons. Science. 353(6302). 925–928. 382 indexed citations
14.
Jovanović, Marko, Michael S. Rooney, Philipp Mertins, et al.. (2015). Dynamic profiling of the protein life cycle in response to pathogens. Science. 347(6226). 1259038–1259038. 333 indexed citations
15.
Patel, Anoop P., Itay Tirosh, John J. Trombetta, et al.. (2014). Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma. Science. 344(6190). 1396–1401. 186 indexed citations
16.
Shalek, Alex K., Jellert T. Gaublomme, Lili Wang, et al.. (2012). Nanowire-Mediated DeliveryEnables Functional Interrogationof Primary Immune Cells: Application to the Analysis of Chronic LymphocyticLeukemia. Europe PMC (PubMed Central). 142 indexed citations
17.
Brown, Jennifer R., Megan Hanna, Bethany Tesar, et al.. (2012). Integrative Genomic Analysis Implicates Gain of PIK3CA at 3q26 and MYC at 8q24 in Chronic Lymphocytic Leukemia. Clinical Cancer Research. 18(14). 3791–3802. 59 indexed citations
18.
Wapinski, Ilan, Jenna Pfiffner, Courtney E. French, et al.. (2010). Gene duplication and the evolution of ribosomal protein gene regulation in yeast. Proceedings of the National Academy of Sciences. 107(12). 5505–5510. 58 indexed citations
19.
Khalil, Ahmad M., Mitchell Guttman, Maite Huarte, et al.. (2009). Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proceedings of the National Academy of Sciences. 106(28). 11667–11672. 2331 indexed citations breakdown →
20.
Tanay, Amos, Aviv Regev, & Ron Shamir. (2005). Conservation and evolvability in regulatory networks: The evolution of ribosomal regulation in yeast. Proceedings of the National Academy of Sciences. 102(20). 7203–7208. 197 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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