Aviv Regev

224.3k citations
319 papers · 80.8k indexed · 61 hit papers · h-index 129
Co-authors
Rahul SatijaEric S. LanderJohn L. RinnNir FriedmanAlexander F. SchierJeffrey A. FarrellDavid GennertFeng Zhang
Topics
Single-cell and spatial transcriptomics (92 papers)RNA Research and Splicing (45 papers)Immune Cell Function and Interaction (32 papers)
Cited by
Cancer ResearchMolecular BiologyAging
Journals
NatureScienceNew England Journal of Medicine
Partner nations
United StatesIsraelGermany

In The Last Decade

Aviv Regev

309 papers receiving 79.8k citations

Hit Papers

Highly Parallel Genome-wide Expression Pr...20032026201020182015201520152009201110002.0k3.0k4.0k
What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

  1. Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
    2015 4.6k citations Rahul Satija, Karthik Shekhar et al. profile →
  2. Spatial reconstruction of single-cell gene expression data
    2015 3.7k citations Rahul Satija, Jeffrey A. Farrell et al. Nature Biotechnology profile →
  3. Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System
    2015 3.4k citations Jonathan S. Gootenberg, Omar O. Abudayyeh et al. profile →
  4. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
    2009 3.3k citations Mitchell Guttman, Ido Amit et al. profile →
  5. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    2011 2.7k citations Aviv Regev, John L. Rinn et al. profile →
  6. Nucleic acid detection with CRISPR-Cas13a/C2c2
    2017 2.7k citations Jonathan S. Gootenberg, Omar O. Abudayyeh et al. Science profile →
  7. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
    2009 2.3k citations Ahmad M. Khalil, Mitchell Guttman et al. Proceedings of the National Academy of Sciences profile →
  8. An embryonic stem cell–like gene expression signature in poorly differentiated aggressive human tumors
    2008 2.0k citations Aviv Regev et al. profile →
  9. C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector
    2016 1.7k citations Omar O. Abudayyeh, Jonathan S. Gootenberg et al. Science profile →
  10. A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response
    2010 1.7k citations Maite Huarte, Mitchell Guttman et al. profile →
  11. Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer
    2017 1.5k citations Itay Tirosh, Anoop P. Patel et al. profile →
  12. lincRNAs act in the circuitry controlling pluripotency and differentiation
    2011 1.5k citations Mitchell Guttman, Manuel Garber et al. profile →
  13. RNA targeting with CRISPR–Cas13
    2017 1.5k citations Omar O. Abudayyeh, Jonathan S. Gootenberg et al. profile →
  14. Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data
    2003 1.2k citations Aviv Regev et al. profile →
  15. The Human Cell Atlas
    2017 1.1k citations Aviv Regev, Eric S. Lander et al. profile →
  16. Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens
    2016 1.0k citations Danielle Dionne, Raktima Raychowdhury et al. profile →
  17. Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5′ Sites
    2014 978 citations Schraga Schwartz, Maxwell R. Mumbach et al. profile →
  18. Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
    2010 952 citations Mitchell Guttman, Manuel Garber et al. Nature Biotechnology profile →
  19. Induction and molecular signature of pathogenic TH17 cells
    2012 914 citations Nir Yosef, Sheng Xiao et al. profile →
  20. Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells
    2013 853 citations Alex K. Shalek, Rahul Satija et al. profile →
  21. Induction of pathogenic TH17 cells by inducible salt-sensing kinase SGK1
    2013 813 citations Chuan Wu, Nir Yosef et al. profile →
  22. Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA
    2014 759 citations Schraga Schwartz, Maxwell R. Mumbach et al. profile →
  23. A unique regulatory phase of DNA methylation in the early mammalian embryo
    2012 754 citations Aviv Regev et al. profile →
  24. Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region
    2018 750 citations Jeffrey R. Moffitt, Dhananjay Bambah-Mukku et al. Science profile →
  25. CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq
    2016 744 citations Dave Gennert, Orit Rozenblatt–Rosen et al. profile →
  26. Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics
    2016 722 citations Karthik Shekhar, Xian Adiconis et al. profile →
  27. High-definition spatial transcriptomics for in situ tissue profiling
    2019 705 citations Sanja Vicković, Aviv Regev et al. profile →
  28. A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response
    2016 690 citations Aviv Regev, Jonathan S. Weissman et al. profile →
  29. Individual brain organoids reproducibly form cell diversity of the human cerebral cortex
    2019 672 citations Sean Simmons, Lan Nguyễn et al. profile →
  30. Landscape of X chromosome inactivation across human tissues
    2017 665 citations Jamie L. Marshall, Rahul Satija et al. profile →
  31. Massively parallel single-nucleus RNA-seq with DroNc-seq
    2017 630 citations Naomi Habib, Inbal Avraham‐Davidi et al. profile →
  32. Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
    2011 630 citations Manuel Garber, Joshua Z. Levin et al. profile →
  33. Disease-associated astrocytes in Alzheimer’s disease and aging
    2020 587 citations Naomi Habib, Cristin McCabe et al. Nature Neuroscience profile →
  34. Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin
    2020 579 citations Aviv Regev et al. profile →
  35. A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia
    2019 558 citations Dariusz Przybylski, Matan Hofree et al. profile →
  36. Comprehensive comparative analysis of strand-specific RNA sequencing methods
    2010 533 citations Joshua Z. Levin, Xian Adiconis et al. profile →
  37. Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution
    2015 528 citations Aviv Regev, John L. Rinn et al. profile →
  38. A module map showing conditional activity of expression modules in cancer
    2004 524 citations Aviv Regev et al. profile →
  39. High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis
    2013 503 citations Schraga Schwartz, Maxwell R. Mumbach et al. profile →
  40. Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis
    2018 501 citations Jeffrey A. Farrell, Samantha J. Riesenfeld et al. Science profile →
  41. Scaling single-cell genomics from phenomenology to mechanism
    2017 487 citations Amos Tanay, Aviv Regev profile →
  42. Temporal Tracking of Microglia Activation in Neurodegeneration at Single-Cell Resolution
    2017 486 citations Aviv Regev et al. profile →
  43. Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells
    2015 463 citations Itay Tirosh, Aviv Regev et al. profile →
  44. Single-cell transcriptomic profiling of the aging mouse brain
    2019 439 citations Sean Simmons, Xian Adiconis et al. Nature Neuroscience profile →
  45. DNA methylation dynamics of the human preimplantation embryo
    2014 422 citations Aviv Regev et al. profile →
  46. Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming
    2019 409 citations Aviv Regev, Eric S. Lander et al. profile →
  47. Checkpoint Blockade Immunotherapy Induces Dynamic Changes in PD-1−CD8+ Tumor-Infiltrating T Cells
    2019 401 citations Danielle Dionne, Orit Rozenblatt–Rosen et al. profile →
  48. Revealing the vectors of cellular identity with single-cell genomics
    2016 401 citations Aviv Regev, Nir Yosef et al. Nature Biotechnology profile →
  49. The Human Cell Atlas: from vision to reality
    2017 354 citations Orit Rozenblatt–Rosen, Aviv Regev et al. profile →
  50. The Human and Mouse Enteric Nervous System at Single-Cell Resolution
    2020 337 citations Christopher S. Smillie, Danielle Dionne et al. profile →
  51. Mitochondrial dysfunction remodels one-carbon metabolism in human cells
    2016 333 citations Dawn Thompson, Aviv Regev et al. profile →
  52. Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics
    2019 325 citations Nir Hacohen, Orit Rozenblatt–Rosen et al. profile →
  53. Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods
    2019 302 citations Nathalie Pochet, Aviv Regev et al. profile →
  54. Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina
    2019 290 citations Karthik Shekhar, Aviv Regev et al. profile →
  55. Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6
    2017 256 citations Matan Hofree, Aviv Regev et al. profile →
  56. TIM-3 restrains anti-tumour immunity by regulating inflammasome activation
    2021 255 citations Danielle Dionne, Orit Rozenblatt–Rosen et al. profile →
  57. snRNA-seq reveals a subpopulation of adipocytes that regulates thermogenesis
    2020 232 citations Aviv Regev et al. profile →
  58. CAR T cell killing requires the IFNγR pathway in solid but not liquid tumours
    2022 225 citations Aviv Regev et al. profile →
  59. Molecular logic of cellular diversification in the mouse cerebral cortex
    2021 204 citations Fei Chen, Aviv Regev et al. profile →
  60. Spatial components of molecular tissue biology
    2022 174 citations Aviv Regev et al. Nature Biotechnology profile →
  61. The evolution, evolvability and engineering of gene regulatory DNA
    2022 130 citations Xian Adiconis, Dawn Thompson et al. profile →

Peers

Aviv Regev
Comparison fields: 5 of 209
  • Molecular Biology 61.9k
  • Cancer Research 20.4k
  • Immunology 11.4k
  • Oncology 7.3k
  • Genetics 6.4k
Replace Jonathan S. Weissman with:
Jonathan S. Weissman United States
Hans Clevers Netherlands
Rudolf Jaenisch United States
George M. Church United States
David M. Sabatini United States
Jay Shendure United States
Benjamin L. Ebert United States
Cole Trapnell United States
Howard Y. Chang United States
Phillip A. Sharp United States
Aviv Regev relative to Jonathan S. Weissman United States Jonathan S. Weissman's profile →
Citations per field
00.5×2×2.9×
Jonathan S. Weissman · 1×
Citations per year

Countries citing papers authored by Aviv Regev

Since Specialization
Citations

This map shows the geographic impact of Aviv Regev's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Aviv Regev with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Aviv Regev more than expected).

Fields of papers citing papers by Aviv Regev

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Aviv Regev. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Aviv Regev. The network helps show where Aviv Regev may publish in the future.

Co-authorship network of co-authors of Aviv Regev

This figure shows the co-authorship network connecting the top 25 collaborators of Aviv Regev. A scholar is included among the top collaborators of Aviv Regev based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Aviv Regev. Aviv Regev is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
#WorkIndexed citations
1
Spatial host–microbiome sequencing reveals niches in the mouse gut
2023 ·Nature Biotechnology ·Britta Lötstedt,Martin Stražar,Ramnik J. Xavier,Aviv Regev,Sanja Vicković
64
2
Integrated multi-omics analyses reveal homology-directed repair pathway as a unique dependency in near-haploid leukemia
2023 ·Blood Cancer Journal ·(unknown),James Dongjoo Ham,(unknown),Lan Nguyễn,Toni Delorey,Azucena Ramos,David M. Weinstock,Aviv Regev,Michael T. Hemann
1
3
γδ T cells regulate the intestinal response to nutrient sensing
2021 ·Science ·Zuri A. Sullivan,William Khoury-Hanold,Jaechul Lim,Christopher S. Smillie,Moshe Biton,Bernardo Sgarbi Reis,Rachel K. Zwick,Scott D. Pope,Kavita Israni-Winger,Roham Parsa,Naomi H. Philip,(unknown),Noah W. Palm,Andrew Wang,Daniel Mucida,Aviv Regev,Ruslan Medzhitov
82
4
QRICH1 dictates the outcome of ER stress through transcriptional control of proteostasis
2020 ·Science ·(unknown),Lingfei Wang,Chih‐Hung Chou,Kai Liu,Toru Nakata,Alok Jaiswal,Junmei Yao,Ariel Lefkovith,(unknown),Jacqueline Perrigoue,Jennifer E. Towne,Aviv Regev,Daniel B. Graham,Ramnik J. Xavier
89
5
Disease-associated astrocytes in Alzheimer’s disease and agingbreakdown →
2020 ·Nature Neuroscience ·Naomi Habib,Cristin McCabe,(unknown),(unknown),Daniel Kitsberg,(unknown),(unknown),Danielle Dionne,Lan Nguyễn,Jamie L. Marshall,Fei Chen,Feng Zhang,Tommy Kaplan,Aviv Regev,Michal Schwartz
587
6
In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with autism risk genes
2020 ·Science ·Xin Jin,Sean Simmons,(unknown),Ashwin S. Shetty,(unknown),Lan Nguyễn,Vahbiz Jokhi,Elise Robinson,Paul Oyler,Nathan Curry,Giulio Deangeli,Simona Lodato,Joshua Z. Levin,Aviv Regev,Feng Zhang,Paola Arlotta
177
7
Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair–Deficient Colorectal Cancer
2019 ·Cancer Immunology Research ·Carino Gurjao,David Liu,Matan Hofree,Saud H. AlDubayan,Isaac Wakiro,Mei-Ju Su,Kristen D. Felt,Evisa Gjini,Lauren K. Brais,Asaf Rotem,Michael H. Rosenthal,Orit Rozenblatt–Rosen,Scott J. Rodig,Kimmie Ng,Eliezer M. Van Allen,Steven M. Corsello,Shuji Ogino,Aviv Regev,Jonathan A. Nowak,Marios Giannakis
60
8
Single-cell reconstruction of developmental trajectories during zebrafish embryogenesisbreakdown →
2018 ·Science ·Jeffrey A. Farrell,(unknown),Samantha J. Riesenfeld,Karthik Shekhar,Aviv Regev,Alexander F. Schier
501
9
Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic regionbreakdown →
2018 ·Science ·Jeffrey R. Moffitt,Dhananjay Bambah-Mukku,Stephen W. Eichhorn,Eric Vaughn,Karthik Shekhar,J. Pérez,Nimrod D. Rubinstein,Junjie Hao,Aviv Regev,Catherine Dulac,Xiaowei Zhuang
750
10
C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effectorbreakdown →
2016 ·Science ·Omar O. Abudayyeh,Jonathan S. Gootenberg,Silvana Konermann,Julia Joung,Ian M. Slaymaker,David Cox,Sergey Shmakov,Kira S. Makarova,Ekaterina Semenova,Leonid Minakhin,Konstantin Severinov,Aviv Regev,Eric S. Lander,Eugene V. Koonin,Feng Zhang
1689
11
Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons
2016 ·Science ·Naomi Habib,Yinqing Li,Matthias Heidenreich,Lukasz Swiech,Inbal Avraham‐Davidi,John J. Trombetta,Cynthia C. Hession,Feng Zhang,Aviv Regev
382
12
Protein C receptor (PROCR) is a negative regulator of Th17 pathogenicity
2016 ·The Journal of Experimental Medicine ·Yasuhiro Kishi,Takaaki Kondo,Sheng Xiao,Nir Yosef,Jellert T. Gaublomme,Chuan Wu,Chao Wang,Norio Chihara,Aviv Regev,Nicole Joller,Vijay K. Kuchroo
49
13
Dynamic profiling of the protein life cycle in response to pathogens
2015 ·Science ·Marko Jovanović,Michael S. Rooney,Philipp Mertins,Dariusz Przybylski,Nicolas Chevrier,Rahul Satija,Edwin H. Rodriguez,Alexander P. Fields,Schraga Schwartz,Raktima Raychowdhury,Maxwell R. Mumbach,Thomas Eisenhaure,Michal Rabani,Dave Gennert,Diana Lu,Toni Delorey,Jonathan S. Weissman,Steven A. Carr,Nir Hacohen,Aviv Regev
333
14
Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma
2014 ·Science ·Anoop P. Patel,Itay Tirosh,John J. Trombetta,Alex K. Shalek,Shawn Gillespie,Hiroaki Wakimoto,Daniel P. Cahill,Brian V. Nahed,William T. Curry,R L Martuza,David N. Louis,Orit Rozenblatt–Rosen,Mario L. Suvà,Aviv Regev,B Bernstein
186
15
Comprehensive comparative analysis of RNA sequencing methods for degraded or low input samples
2013 ·Digital Access to Scholarship at Harvard (DASH) (Harvard University) ·Xian Adiconis,Diego Borges-Rivera,Rahul Satija,David S. DeLuca,Michele Busby,Aaron M. Berlin,Andrey Sivachenko,Dawn Thompson,Alec Wysoker,Timothy R. Fennell,Andreas Gnirke,Nathalie Pochet,Aviv Regev,Joshua Z. Levin
332
16
Nanowire-Mediated DeliveryEnables Functional Interrogationof Primary Immune Cells: Application to the Analysis of Chronic LymphocyticLeukemia
2012 ·Europe PMC (PubMed Central) ·Alex K. Shalek,Jellert T. Gaublomme,Lili Wang,Nir Yosef,Nicolas Chevrier,Mette Sondrup Andersen,Jacob T. Robinson,Nathalie Pochet,Donna Neuberg,Rona S. Gertner,Ido Amit,Jennifer R. Brown,Nir Hacohen,Aviv Regev,Catherine J. Wu,Hongkun Park
142
17
Integrative Genomic Analysis Implicates Gain of PIK3CA at 3q26 and MYC at 8q24 in Chronic Lymphocytic Leukemia
2012 ·Clinical Cancer Research ·Jennifer R. Brown,Megan Hanna,Bethany Tesar,Lillian Werner,Nathalie Pochet,John M. Asara,Yaoyu E. Wang,Paola Dal Cin,Stacey M. Fernandes,(unknown),Laura E. MacConaill,Catherine J. Wu,Yves Van de Peer,Mick Correll,Aviv Regev,Donna Neuberg,Arnold S. Freedman
59
18
Gene duplication and the evolution of ribosomal protein gene regulation in yeast
2010 ·Proceedings of the National Academy of Sciences ·Ilan Wapinski,Jenna Pfiffner,Courtney E. French,Amanda Socha,Dawn Thompson,Aviv Regev
58
19
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expressionbreakdown →
2009 ·Proceedings of the National Academy of Sciences ·Ahmad M. Khalil,Mitchell Guttman,Maite Huarte,Manuel Garber,Arjun Raj,(unknown),(unknown),(unknown),B Bernstein,Alexander van Oudenaarden,Aviv Regev,Eric S. Lander,John L. Rinn
2331
20
Conservation and evolvability in regulatory networks: The evolution of ribosomal regulation in yeast
2005 ·Proceedings of the National Academy of Sciences ·Amos Tanay,Aviv Regev,Ron Shamir
197

About Aviv Regev

Aviv Regev is a scholar working on Biophysics, Molecular Biology and Immunology, having authored 319 papers that have together received 80.8k indexed citations. Recurring topics across this work include Single-cell and spatial transcriptomics (92 papers), RNA Research and Splicing (45 papers) and Immune Cell Function and Interaction (32 papers). The work is most often cited by research in Cancer Research (20.4k citations), Molecular Biology (61.9k citations) and Aging (1.0k citations). Aviv Regev has collaborated with scholars based in United States, Israel and Germany. Frequent co-authors include Rahul Satija, Eric S. Lander, John L. Rinn, Nir Friedman, Alexander F. Schier, Jeffrey A. Farrell, David Gennert, Feng Zhang, Mitchell Guttman and Manuel Garber. Their work appears in journals such as Nature, Science and New England Journal of Medicine.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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