Matan Hofree

13.6k total citations · 4 hit papers
25 papers, 3.1k citations indexed

About

Matan Hofree is a scholar working on Molecular Biology, Cancer Research and Oncology. According to data from OpenAlex, Matan Hofree has authored 25 papers receiving a total of 3.1k indexed citations (citations by other indexed papers that have themselves been cited), including 16 papers in Molecular Biology, 8 papers in Cancer Research and 7 papers in Oncology. Recurrent topics in Matan Hofree's work include Bioinformatics and Genomic Networks (6 papers), Cancer Genomics and Diagnostics (5 papers) and Single-cell and spatial transcriptomics (4 papers). Matan Hofree is often cited by papers focused on Bioinformatics and Genomic Networks (6 papers), Cancer Genomics and Diagnostics (5 papers) and Single-cell and spatial transcriptomics (4 papers). Matan Hofree collaborates with scholars based in United States, Israel and South Korea. Matan Hofree's co-authors include Trey Ideker, Hannah Carter, Andrew M. Gross, John Paul Shen, Aviv Regev, Orit Rozenblatt–Rosen, Han‐Yu Chuang, Anindita Basu, Naomi Habib and Kristin Ardlie and has published in prestigious journals such as Science, Cell and Nucleic Acids Research.

In The Last Decade

Matan Hofree

25 papers receiving 3.1k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Massively parallel single-nucleus RNA-seq with DroNc-seq

2017 630 citations Naomi Habib, Inbal Avraham‐Davidi et al. Nature Methods profile →
A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia

2019 558 citations Ninib Baryawno, Dariusz Przybylski et al. Cell profile →
Network-based stratification of tumor mutations

2013 539 citations Matan Hofree, John Paul Shen et al. Nature Methods profile →
Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6

2017 256 citations Joo‐Hyeon Lee, Tuomas Tammela et al. Cell profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Matan Hofree United States	18	2.0k	684	538	441	432	25	3.1k
Fengju Chen United States	26	1.6k 0.8×	703 1.0×	680 1.3×	553 1.3×	501 1.2×	62	3.1k
Lukas M. Simon United States	18	2.3k 1.2×	640 0.9×	303 0.6×	339 0.8×	529 1.2×	47	3.4k
Julie Nardone United States	16	2.9k 1.5×	503 0.7×	644 1.2×	308 0.7×	689 1.6×	18	4.0k
Zheng Xia United States	30	3.9k 2.0×	947 1.4×	448 0.8×	378 0.9×	566 1.3×	93	5.0k
Rakesh Nagarajan United States	30	1.8k 0.9×	812 1.2×	332 0.6×	282 0.6×	215 0.5×	60	3.3k
Joshua Gould United States	12	2.7k 1.4×	810 1.2×	1.2k 2.2×	468 1.1×	601 1.4×	17	4.1k
Tilman Brummer Germany	35	2.9k 1.5×	547 0.8×	1.2k 2.2×	240 0.5×	897 2.1×	98	4.3k
Florian Buettner Germany	26	3.6k 1.8×	697 1.0×	388 0.7×	385 0.9×	855 2.0×	52	5.3k
Lisa M. Sapinoso United States	17	3.4k 1.7×	740 1.1×	841 1.6×	421 1.0×	519 1.2×	19	4.8k
Thomas G. P. Grünewald Germany	37	2.7k 1.4×	1.1k 1.7×	1.0k 1.9×	1.0k 2.4×	456 1.1×	103	4.4k

Countries citing papers authored by Matan Hofree

Since Specialization

Citations

This map shows the geographic impact of Matan Hofree's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Matan Hofree with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Matan Hofree more than expected).

Fields of papers citing papers by Matan Hofree

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Matan Hofree. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Matan Hofree. The network helps show where Matan Hofree may publish in the future.

Co-authorship network of co-authors of Matan Hofree

This figure shows the co-authorship network connecting the top 25 collaborators of Matan Hofree. A scholar is included among the top collaborators of Matan Hofree based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Matan Hofree. Matan Hofree is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Klochendler, Agnes, Reba Condiotti, Sharona Elgavish, et al.. (2024). Senescence of human pancreatic beta cells enhances functional maturation through chromatin reorganization and promotes interferon responsiveness. Nucleic Acids Research. 52(11). 6298–6316. 6 indexed citations

Chowdhury, Saikat, Matan Hofree, Kangyu Lin, et al.. (2021). Implications of Intratumor Heterogeneity on Consensus Molecular Subtype (CMS) in Colorectal Cancer. Cancers. 13(19). 4923–4923. 11 indexed citations

Karthaus, Wouter R., Matan Hofree, Danielle Choi, et al.. (2020). Regenerative potential of prostate luminal cells revealed by single-cell analysis. Science. 368(6490). 497–505. 170 indexed citations

Boroughs, Angela C., Rebecca C. Larson, Nemanja D. Marjanovic, et al.. (2020). A Distinct Transcriptional Program in Human CAR T Cells Bearing the 4-1BB Signaling Domain Revealed by scRNA-Seq. Molecular Therapy. 28(12). 2577–2592. 62 indexed citations

Ehrlich, Avner, Skyler Uhl, Konstantinos Ioannidis, et al.. (2020). The SARS-CoV-2 Transcriptional Metabolic Signature in Lung Epithelium. SSRN Electronic Journal. 45 indexed citations

Gurjao, Carino, David Liu, Matan Hofree, et al.. (2019). Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair–Deficient Colorectal Cancer. Cancer Immunology Research. 7(8). 1230–1236. 60 indexed citations

Baryawno, Ninib, Dariusz Przybylski, Monika S. Kowalczyk, et al.. (2019). A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia. Cell. 177(7). 1915–1932.e16. 558 indexed citations breakdown →

Ito, Yoshinaga, Orr Ashenberg, Jason W. Pyrdol, et al.. (2018). Rapid CLIP dissociation from MHC II promotes an unusual antigen presentation pathway in autoimmunity. The Journal of Experimental Medicine. 215(10). 2617–2635. 22 indexed citations

Carter, Hannah, Rachel Marty, Matan Hofree, et al.. (2017). Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer. Cancer Discovery. 7(4). 410–423. 87 indexed citations

10.

Habib, Naomi, Inbal Avraham‐Davidi, Anindita Basu, et al.. (2017). Massively parallel single-nucleus RNA-seq with DroNc-seq. Nature Methods. 14(10). 955–958. 630 indexed citations breakdown →

11.

Lee, Joo‐Hyeon, Tuomas Tammela, Matan Hofree, et al.. (2017). Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6. Cell. 170(6). 1149–1163.e12. 256 indexed citations breakdown →

12.

Hofree, Matan, Hannah Carter, Jason F. Kreisberg, et al.. (2016). Challenges in identifying cancer genes by analysis of exome sequencing data. Nature Communications. 7(1). 12096–12096. 29 indexed citations

13.

Okimoto, Ross A., Frank Breitenbuecher, Victor Olivas, et al.. (2016). Inactivation of Capicua drives cancer metastasis. Nature Genetics. 49(1). 87–96. 117 indexed citations

14.

Kim, Hoguen, Seul‐Ki Jeong, Hyoung–Joo Lee, et al.. (2015). Integrated Proteomic and Genomic Analysis of Gastric Cancer Patient Tissues. Journal of Proteome Research. 14(12). 4995–5006. 6 indexed citations

15.

Gross, Andrew M., Ryan K. Orosco, John Paul Shen, et al.. (2014). Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss. Nature Genetics. 46(9). 939–943. 90 indexed citations

16.

Carter, Hannah, Matan Hofree, & Trey Ideker. (2013). Genotype to phenotype via network analysis. Current Opinion in Genetics & Development. 23(6). 611–621. 83 indexed citations

17.

Hofree, Matan, John Paul Shen, Hannah Carter, Andrew M. Gross, & Trey Ideker. (2013). Network-based stratification of tumor mutations. Nature Methods. 10(11). 1108–1115. 539 indexed citations breakdown →

18.

Potts, Malia B., Hyun Seok Kim, Kurt W. Fisher, et al.. (2013). Using Functional Signature Ontology (FUSION) to Identify Mechanisms of Action for Natural Products. Science Signaling. 6(297). ra90–ra90. 57 indexed citations

19.

Cristofanilli, Massimo, Fredika M. Robertson, James M. Reuben, et al.. (2013). Genome Wide Proteomics of ERBB2 and EGFR and Other Oncogenic Pathways in Inflammatory Breast Cancer. Journal of Proteome Research. 12(6). 2805–2817. 36 indexed citations

20.

Elefant, Naama, et al.. (2010). RepTar: a database of predicted cellular targets of host and viral miRNAs. Nucleic Acids Research. 39(suppl_1). D188–D194. 44 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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