Jeffrey R. Moffitt

13.5k citations

55 papers · 7.8k indexed · 8 hit papers · h-index 31

Biophysics top 0.05%
- Advanced Fluorescence Microscopy Techniques 11
- Cell Image Analysis Techniques 5
Structural Biology top 0.5%
Molecular Biology top 1%
- Single-cell and spatial transcriptomics 17
- Advanced biosensing and bioanalysis techniques 10
- RNA and protein synthesis mechanisms 5
Cancer Research top 5%
Atomic and Molecular Physics, and Optics top 2%
- Orbital Angular Momentum in Optics 8
Biomedical Engineering
- Microfluidic and Bio-sensing Technologies 7
- Near-Field Optical Microscopy 5

Co-authors: Xiaowei Zhuang Siyuan Wang Carlos Bustamante Alistair N. Boettiger Kok Hao Chen Yann R. Chemla Steven B. Smith Junjie Hao
Cited by: Biophysics Structural Biology Molecular Biology
Partner nations: United States Germany Slovakia

In The Last Decade

Jeffrey R. Moffitt

50 papers receiving 7.6k citations

Hit Papers

8 papers align trajectories log scale

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

2025 Highly multiplexed spatial transcriptomics in bacteria
2025 Spatial transcriptomics of healthy and fibrotic human liver at single-cell resolution
2022 The emerging landscape of spatial profiling technologies
2018 Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region
2016 Spatial organization of chromatin domains and compartments in single chromosomes
2016 Super-resolution imaging reveals distinct chromatin folding for different epigenetic states
2015 Spatially resolved, highly multiplexed RNA profiling in single cells
2008 Recent Advances in Optical Tweezers

Peers

Countries citing papers authored by Jeffrey R. Moffitt

Since Specialization

Citations

This map shows the geographic impact of Jeffrey R. Moffitt's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jeffrey R. Moffitt with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jeffrey R. Moffitt more than expected).

Fields of papers citing papers by Jeffrey R. Moffitt

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jeffrey R. Moffitt. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jeffrey R. Moffitt. The network helps show where Jeffrey R. Moffitt may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Jeffrey R. Moffitt, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Jeffrey R. Moffitt Line = papers co-authored together Jeffrey R. Moffitt links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	An image-based transcriptomics atlas reveals the regional and microbiota-dependent molecular, cellular, and spatial structure of the murine gut Rosalind J. Xu,Hao Zhang,Paolo Cadinu,Phillip Nicol,U. Herrmann,Tyrone Lee,Ludwig Geistlinger,Rafael A. Irizarry,Jeffrey R. Moffitt	2026	0
2	Spatial transcriptomics of healthy and fibrotic human liver at single-cell resolutionbreakdown → Brianna R. Watson,Biplab Paul,Raza‐Ur Rahman,Liat Amir-Zilberstein,Åsa Segerstolpe,Eliana T. Epstein,Shane Murphy,Ludwig Geistlinger,Tyrone Lee,Angela Shih,Jacques Deguine,Ramnik J. Xavier,Jeffrey R. Moffitt,Alan C. Mullen	2025	29
3	Imaging the Intestinal Transcriptome With Multiplexed Error‐Robust Fluorescence In Situ Hybridization (MERFISH) Paolo Cadinu,Evan Yang,Rosalind J. Xu,Brianna R. Watson,Jesse Luce,Jeffrey R. Moffitt	2025	3
4	Protocol optimization improves the performance of multiplexed RNA imaging Jesse Luce,Christian A. Lochbaum,Paolo Cadinu,Rosalind J. Xu,Jose Aceves-Salvador,Evangelia Semizoglou,Bertrand Wong,I. López,Alan Cantor,William Renthal,Jeffrey R. Moffitt	2025	0
5	Spatial enrichment of the type 1 interferon signature in the brain of a neuropsychiatric lupus murine model Ernest Aw,Yingying Zhang,Esra Yalçın,U. Herrmann,Stacie L. Lin,Kent Langston,Carlos Castrillón,Minghe Ma,Jeffrey R. Moffitt,Michael C. Carroll	2023	6
6	Spatial organization of the mouse retina at single cell resolution by MERFISH Jongsu Choi,Jin Li,Salma Ferdous,Qingnan Liang,Jeffrey R. Moffitt,Rui Chen	2023	30
7	Spatial transcriptomics reveals the distinct organization of mouse prefrontal cortex and neuronal subtypes regulating chronic pain Aritra Bhattacherjee,Chao Zhang,Brianna R. Watson,Mohamed Nadhir Djekidel,Jeffrey R. Moffitt,Yi Zhang	2023	27
8	Cell segmentation in imaging-based spatial transcriptomics Viktor Petukhov,Rosalind J. Xu,Ruslan Soldatov,Paolo Cadinu,Konstantin Khodosevich,Jeffrey R. Moffitt,Peter V. Kharchenko	2021	165
9	Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic regionbreakdown → Jeffrey R. Moffitt,Dhananjay Bambah-Mukku,Stephen W. Eichhorn,Eric Vaughn,Karthik Shekhar,J. Pérez,Nimrod D. Rubinstein,Junjie Hao,Aviv Regev,Catherine Dulac,Xiaowei Zhuang	2018	750
10	Spatial Organization of Chromatin Domains and Compartments in Single Chromosomes Siyuan Wang,Jun-Han Su,Brian J. Beliveau,Bogdan Bintu,Jeffrey R. Moffitt,Chao-ting Wu,Xiaowei Zhuang	2017	6
11	Spatial organization of chromatin domains and compartments in single chromosomesbreakdown → Siyuan Wang,Jun-Han Su,Brian J. Beliveau,Bogdan Bintu,Jeffrey R. Moffitt,Chao-ting Wu,Xiaowei Zhuang	2016	422
12	RNA Imaging with Multiplexed Error-Robust Fluorescence In Situ Hybridization (MERFISH) Jeffrey R. Moffitt,Xiaowei Zhuang	2016	143
13	Spatially resolved, highly multiplexed RNA profiling in single cellsbreakdown → Kok Hao Chen,Alistair N. Boettiger,Jeffrey R. Moffitt,Siyuan Wang,Xiaowei Zhuang	2015	1703
14	Characterization and development of photoactivatable fluorescent proteins for single-molecule–based superresolution imaging Siyuan Wang,Jeffrey R. Moffitt,Graham T. Dempsey,X. Sunney Xie,Xiaowei Zhuang	2014	266
15	High Degree of Coordination and Division of Labor among Subunits in a Homomeric Ring ATPase Gheorghe Chistol,Shixin Liu,Craig L. Hetherington,Jeffrey R. Moffitt,Shelley Grimes,Paul J. Jardine,Carlos Bustamante	2012	91
16	The single-cell chemostat: an agarose-based, microfluidic device for high-throughput, single-cell studies of bacteria and bacterial communities Jeffrey R. Moffitt,Jeffrey B. Lee,Philippe Cluzel	2012	119
17	Time-gating improves the spatial resolution of STED microscopy Jeffrey R. Moffitt,Christian Osseforth,Jens Michaelis	2011	104
18	Methods in Statistical Kinetics Jeffrey R. Moffitt,Yann R. Chemla,Carlos Bustamante	2010	52
19	Viral DNA Packaging at Base Pair Resolution Jeffrey R. Moffitt	2010	0
20	Substrate interactions and promiscuity in a viral DNA packaging motor K. Aathavan,Adam Terrall Politzer,Ariel Kaplan,Jeffrey R. Moffitt,Yann R. Chemla,Shelley Grimes,Paul J. Jardine,Dwight L. Anderson,Carlos Bustamante	2009	95

About Jeffrey R. Moffitt

Jeffrey R. Moffitt is a scholar working on Biophysics, Structural Biology and Behavioral Neuroscience, having authored 55 papers that have together received 7.8k indexed citations. Recurring topics across this work include Single-cell and spatial transcriptomics (17 papers), Advanced Fluorescence Microscopy Techniques (11 papers), Advanced biosensing and bioanalysis techniques (10 papers), Orbital Angular Momentum in Optics (8 papers), Microfluidic and Bio-sensing Technologies (7 papers), Near-Field Optical Microscopy (5 papers), RNA and protein synthesis mechanisms (5 papers) and Cell Image Analysis Techniques (5 papers). The work is most often cited by research in Biophysics (1.5k citations), Structural Biology (302 citations) and Molecular Biology (5.6k citations). Jeffrey R. Moffitt has collaborated with scholars based in United States, Germany and Slovakia. Frequent co-authors include Xiaowei Zhuang, Siyuan Wang, Carlos Bustamante, Alistair N. Boettiger, Kok Hao Chen, Yann R. Chemla, Steven B. Smith, Junjie Hao, Chao-ting Wu and Bogdan Bintu.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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