Tommi Vatanen

17.7k citations

54 papers · 3.7k indexed · 3 hit papers · h-index 25

Co-authors: Ramnik J. Xavier Justin M. O’Sullivan Hera Vlamakis Brooke C. Wilson Wayne S. Cutfield Dirk Gevers Mikael Knip Curtis Huttenhower
Topics: Gut microbiota and health (28 papers)Clostridium difficile and Clostridium perfringens research (12 papers)Infant Nutrition and Health (6 papers)
Cited by: Gastroenterology Infectious Diseases Biological Psychiatry
Journals: Cell Proceedings of the National Academy of Sciences Nature Communications
Partner nations: United States New Zealand Finland

In The Last Decade

Tommi Vatanen

52 papers receiving 3.6k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability

2016 714 citations Tommi Vatanen, Heli Siljander et al. profile →
Structure-based protein function prediction using graph convolutional networks

2021 467 citations Vladimir Gligorijević, Tomasz Kościółek et al. Nature Communications profile →
The Super-Donor Phenomenon in Fecal Microbiota Transplantation

2019 270 citations Brooke C. Wilson, Tommi Vatanen et al. profile →

Peers

Countries citing papers authored by Tommi Vatanen

Since Specialization

Citations

This map shows the geographic impact of Tommi Vatanen's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Tommi Vatanen with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Tommi Vatanen more than expected).

Fields of papers citing papers by Tommi Vatanen

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Tommi Vatanen. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Tommi Vatanen. The network helps show where Tommi Vatanen may publish in the future.

Co-authorship network of co-authors of Tommi Vatanen

This figure shows the co-authorship network connecting the top 25 collaborators of Tommi Vatanen. A scholar is included among the top collaborators of Tommi Vatanen based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Tommi Vatanen. Tommi Vatanen is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Protein language models uncover carbohydrate-active enzyme function in metagenomics 2025 ·BMC Bioinformatics ·(unknown),Ahmed M. Mohamed,Chenhao Li,Tommi Vatanen,D. B. Graham,Róisı́n M. Owens,Sabina Leanti La Rosa,Damian R. Plichta,Sergio Bacallado,Ramnik J. Xavier	0
2	Mobile genetic elements: the hidden puppet masters underlying infant gut microbiome assembly? 2024 ·PubMed ·(unknown),Ville‐Petri Friman,Tommi Vatanen	0
3	Protocol for the Gut Bugs in Autism Trial: a double-blind randomised placebo-controlled trial of faecal microbiome transfer for the treatment of gastrointestinal symptoms in autistic adolescents and adults 2024 ·BMJ Open ·Ry Y. Tweedie‐Cullen,Karen S. W. Leong,Brooke C. Wilson,José G. B. Derraik,Benjamin B. Albert,Ruth Monk,Tommi Vatanen,(unknown),(unknown),(unknown),Kathryn L. Beck,Hiran Thabrew,Justin M. O’Sullivan,Wayne S. Cutfield	2
4	Gut microbiome shifts in people with type 1 diabetes are associated with glycaemic control: an INNODIA study 2024 ·Diabetologia ·Tommi Vatanen,Carine de Beaufort,M. Loredana Marcovecchio,Lut Overbergh,Søren Brunak,Mark Peakman,Chantal Mathieu,Mikael Knip	9
5	An open-label pilot trial of faecal microbiome transfer to restore the gut microbiome in anorexia nervosa: protocol 2023 ·BMJ Open ·Brooke C. Wilson,José G. B. Derraik,Benjamin B. Albert,Karen S. W. Leong,Ry Y. Tweedie‐Cullen,(unknown),(unknown),(unknown),Tommi Vatanen,Hiran Thabrew,Wayne S. Cutfield,Justin M. O’Sullivan	7
6	Comprehensive Functional Annotation of Metagenomes and Microbial Genomes Using a Deep Learning-Based Method 2023 ·mSystems ·(unknown),(unknown),(unknown),Vladimir Gligorijević,Chris Chandler,Richard Bonneau,Ramnik J. Xavier,Tommi Vatanen,Tomasz Kościółek	20
7	Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan 2023 ·Nature Microbiology ·Joachim Johansen,Koji Atarashi,Yasumichi Arai,Nobuyoshi Hirose,Søren J. Sørensen,Tommi Vatanen,Mikael Knip,Kenya Honda,Ramnik J. Xavier,Simon Rasmussen,Damian R. Plichta	54
8	A gut microbial peptide and molecular mimicry in the pathogenesis of type 1 diabetes 2022 ·Proceedings of the National Academy of Sciences ·Kiran Girdhar,Qian Huang,I‐Ting Chow,Tommi Vatanen,(unknown),(unknown),Patrick Autissier,Mark A. Atkinson,William W. Kwok,C. Ronald Kahn,Emrah Altındiş	63
9	Strain-specific impacts of probiotics are a significant driver of gut microbiome development in very preterm infants 2022 ·Nature Microbiology ·(unknown),A Masi,Gregory R. Young,Tommi Vatanen,Christopher A Lamb,(unknown),Jonathan Coxhead,(unknown),Benjamin J. Marsland,Nicholas D. Embleton,Janet Berrington,Christopher J. Stewart	96
10	Oral administration of maternal vaginal microbes at birth to restore gut microbiome development in infants born by caesarean section: A pilot randomised placebo-controlled trial 2021 ·EBioMedicine ·Brooke C. Wilson,(unknown),Celia P. Grigg,José G. B. Derraik,Valentina Chiavaroli,(unknown),(unknown),(unknown),(unknown),Tommi Vatanen,Justin M. O’Sullivan,Wayne S. Cutfield	75
11	Strain engraftment competition and functional augmentation in a multi-donor fecal microbiota transplantation trial for obesity 2021 ·Microbiome ·Brooke C. Wilson,Tommi Vatanen,Thilini N. Jayasinghe,Karen S. W. Leong,José G. B. Derraik,Benjamin B. Albert,Valentina Chiavaroli,Darren Svirskis,Kathryn L. Beck,Cathryn A. Conlon,Yannan Jiang,William Schierding,David J. Holland,Wayne S. Cutfield,Justin M. O’Sullivan	64
12	High prevalence of undiagnosed comorbidities among adolescents with obesity 2020 ·Scientific Reports ·Karen S. W. Leong,Thilini N. Jayasinghe,Brooke C. Wilson,José G. B. Derraik,Benjamin B. Albert,Valentina Chiavaroli,Darren Svirskis,Kathryn L. Beck,Cathryn A. Conlon,Yannan Jiang,William Schierding,Tommi Vatanen,David J. Holland,Justin M. O’Sullivan,Wayne S. Cutfield	13
13	The microbial biogeography of the gastrointestinal tract of preterm and term lambs 2020 ·Scientific Reports ·Clara Y.L. Chong,Tommi Vatanen,Mark H. Oliver,Frank H. Bloomfield,Justin M. O’Sullivan	8
14	Randomised Double-Blind Placebo-Controlled Trial of Inulin with Metronidazole in Non-Alcoholic Fatty Liver Disease (NAFLD) 2020 ·Nutrients ·Clara Y.L. Chong,David Orr,Lindsay D. Plank,Tommi Vatanen,Justin M. O’Sullivan,Rinki Murphy	53
15	Linking Strain Engraftment in Fecal Microbiota Transplantation With Maintenance of Remission in Crohn’s Disease 2020 ·Gastroenterology ·Lingjia Kong,Jason Lloyd‐Price,Tommi Vatanen,Philippe Seksik,Laurent Beaugerie,Tabassome Simon,Hera Vlamakis,Harry Sokol,Ramnik J. Xavier	42
16	Protocol for the Gut Bugs Trial: a randomised double-blind placebo-controlled trial of gut microbiome transfer for the treatment of obesity in adolescents 2019 ·BMJ Open ·Karen S. W. Leong,Thilini N. Jayasinghe,José G. B. Derraik,Benjamin B. Albert,Valentina Chiavaroli,Darren Svirskis,Kathryn L. Beck,Cathryn A. Conlon,Yannan Jiang,William Schierding,Tommi Vatanen,David J. Holland,Justin M. O’Sullivan,Wayne S. Cutfield	16
17	An additive Gaussian process regression model for interpretable non-parametric analysis of longitudinal data 2019 ·Nature Communications ·Lu Cheng,(unknown),Tommi Vatanen,(unknown),Riitta Lahesmaa,Aki Vehtari,Harri Lähdesmäki	69
18	Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children 2017 ·Proceedings of the National Academy of Sciences ·Guoyan Zhao,Tommi Vatanen,Lindsay Droit,Arnold Park,Aleksandar D. Kostic,Tiffany Poon,Hera Vlamakis,Heli Siljander,Taina Härkönen,(unknown),Aleksandr Peet,Vallo Tillmann,Jorma Ilonen,David Wang,Mikael Knip,Ramnik J. Xavier,Herbert W. Virgin	212
19	The influence of a short-term gluten-free diet on the human gut microbiome 2016 ·Genome Medicine ·Marc Jan Bonder,Ettje F. Tigchelaar,Xianghang Cai,Gosia Trynka,María Carmen Cénit,Barbara Hrdličková,Huanzi Zhong,Tommi Vatanen,Dirk Gevers,Cisca Wijmenga,Yang Wang,Alexandra Zhernakova	201
20	Language identification of short text segments with n-gram models 2010 ·Language Resources and Evaluation ·Tommi Vatanen,(unknown),Sámi Virpioja	58

About Tommi Vatanen

Tommi Vatanen is a scholar working on Gastroenterology, Infectious Diseases and Molecular Biology, having authored 54 papers that have together received 3.7k indexed citations. Recurring topics across this work include Gut microbiota and health (28 papers), Clostridium difficile and Clostridium perfringens research (12 papers) and Infant Nutrition and Health (6 papers). The work is most often cited by research in Gastroenterology (429 citations), Infectious Diseases (886 citations) and Biological Psychiatry (91 citations). Tommi Vatanen has collaborated with scholars based in United States, New Zealand and Finland. Frequent co-authors include Ramnik J. Xavier, Justin M. O’Sullivan, Hera Vlamakis, Brooke C. Wilson, Wayne S. Cutfield, Dirk Gevers, Mikael Knip, Curtis Huttenhower, Eric A. Franzosa and Taina Härkönen. Their work appears in journals such as Cell, Proceedings of the National Academy of Sciences and Nature Communications.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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