Marc Jan Bonder

31.0k citations

46 papers · 5.1k indexed · 4 hit papers · h-index 29

Co-authors: Cisca Wijmenga Alexandra Zhernakova Jingyuan Fu Ramnik J. Xavier Lude Franke Rinse K. Weersma Floris Imhann Arnau Vich Vila
Topics: Gut microbiota and health (15 papers)Epigenetics and DNA Methylation (14 papers)Genetic Associations and Epidemiology (7 papers)
Cited by: Gastroenterology Biological Psychiatry Aging
Journals: Cell Nucleic Acids Research Nature Communications
Partner nations: Netherlands United Kingdom United States

In The Last Decade

Marc Jan Bonder

44 papers receiving 5.1k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Proton pump inhibitors affect the gut microbiome

2015 935 citations Floris Imhann, Marc Jan Bonder et al. Gut profile →
Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity

2016 826 citations Marc Jan Bonder, Alexander Kurilshikov et al. profile →
Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease

2016 576 citations Floris Imhann, Arnau Vich Vila et al. Gut profile →
The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids

2015 540 citations Jingyuan Fu, Marc Jan Bonder et al. profile →

Peers

Countries citing papers authored by Marc Jan Bonder

Since Specialization

Citations

This map shows the geographic impact of Marc Jan Bonder's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Marc Jan Bonder with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Marc Jan Bonder more than expected).

Fields of papers citing papers by Marc Jan Bonder

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Marc Jan Bonder. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Marc Jan Bonder. The network helps show where Marc Jan Bonder may publish in the future.

Co-authorship network of co-authors of Marc Jan Bonder

This figure shows the co-authorship network connecting the top 25 collaborators of Marc Jan Bonder. A scholar is included among the top collaborators of Marc Jan Bonder based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Marc Jan Bonder. Marc Jan Bonder is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Epigenome-wide association study on the plasma metabolome suggests self-regulation of the glycine and serine pathway through DNA methylation 2024 ·Clinical Epigenetics ·(unknown),(unknown),Sergio Andreu‐Sánchez,Torsten Plösch,(unknown),Shuang� Li,Marc Jan Bonder,(unknown),Joyce B. J. van Meurs,Mohsen Ghanbari,Lude Franke,(unknown),Jingyuan Fu,(unknown),Daria V. Zhernakova	3
2	scEpiAge: an age predictor highlighting single-cell ageing heterogeneity in mouse blood 2024 ·Nature Communications ·Marc Jan Bonder,Stephen J. Clark,Felix Krueger,(unknown),(unknown),(unknown),Thomas M. Stubbs,Anne‐Katrien Stark,Steffen Rulands,Oliver Stegle,Wolf Reik,Ferdinand von Meyenn	4
3	Antibody signatures against viruses and microbiome reflect past and chronic exposures and associate with aging and inflammation 2024 ·iScience ·Sergio Andreu‐Sánchez,(unknown),(unknown),(unknown),(unknown),(unknown),Peter M. Lansdorp,(unknown),Marc Jan Bonder,Lude Franke,Thomas Vogl,Monique G.P. van der Wijst,Marta Melé,(unknown),Jingyuan Fu,(unknown)	2
4	pycoMeth: a toolbox for differential methylation testing from Nanopore methylation calls 2023 ·Genome biology ·René Snajder,Adrien Léger,Oliver Stegle,Marc Jan Bonder	7
5	Genetic, parental and lifestyle factors influence telomere length 2022 ·Communications Biology ·Sergio Andreu‐Sánchez,Geraldine Aubert,(unknown),Sandra Henkelman,Daria V. Zhernakova,Trishla Sinha,Alexander Kurilshikov,María Carmen Cénit,Marc Jan Bonder,Lude Franke,Cisca Wijmenga,Jingyuan Fu,Monique G.P. van der Wijst,Marta Melé,Peter M. Lansdorp,Alexandra Zhernakova	43
6	Optimizing expression quantitative trait locus mapping workflows for single-cell studies 2021 ·Genome biology ·Anna Cuomo,(unknown),Christina B. Azodi,Davis J. McCarthy,Marc Jan Bonder	31
7	The single-cell eQTLGen consortium 2020 ·eLife ·Monique G.P. van der Wijst,(unknown),Hilde E. Groot,Gosia Trynka,Chung-Chau Hon,Marc Jan Bonder,Oliver Stegle,Martijn C. Nawijn,Youssef Idaghdour,Pim van der Harst,(unknown),Joseph E. Powell,Fabian J. Theis,Ahmed Mahfouz,Matthias Heinig,Lude Franke	116
8	Ageing affects DNA methylation drift and transcriptional cell-to-cell variability in mouse muscle stem cells 2019 ·Nature Communications ·Irene Hernando-Herraez,Brendan Evano,Thomas M. Stubbs,Pierre‐Henri Commère,Marc Jan Bonder,Stephen J. Clark,Simon Andrews,Shahragim Tajbakhsh,Wolf Reik	155
9	Systematic genetic analysis of the MHC region reveals mechanistic underpinnings of HLA type associations with disease 2019 ·University of Groningen research database (University of Groningen / Centre for Information Technology) ·Matteo D’Antonio,Joaquin Reyna,David Jakubosky,Margaret K. R. Donovan,Marc Jan Bonder,Hiroko Matsui,Oliver Stegle,Naoki Nariai,Agnieszka D’Antonio‐Chronowska,Kelly A. Frazer	28
10	Hematopoietic Npc1 mutation shifts gut microbiota composition in Ldlr−/− mice on a high-fat, high-cholesterol diet 2019 ·Scientific Reports ·Tom Houben,John Penders,Yvonne Oligschlaeger,(unknown),Marc Jan Bonder,Debby P.Y. Koonen,Jingyuan Fu,Marten H. Hofker,Ronit Shiri‐Sverdlov	3
11	Analysis of 1135 gut metagenomes identifies sex-specific resistome profiles 2018 ·Gut Microbes ·Trishla Sinha,Arnau Vich Vila,Sanzhima Garmaeva,Soesma A. Jankipersadsing,Floris Imhann,Valerie Collij,Marc Jan Bonder,Xiaofang Jiang,Thomas Gurry,Eric J. Alm,Mauro D’Amato,Rinse K. Weersma,Sicco A. Scherjon,Cisca Wijmenga,Jingyuan Fu,Alexander Kurilshikov,Alexandra Zhernakova	140
12	Individual variations in cardiovascular-disease-related protein levels are driven by genetics and gut microbiome 2018 ·Nature Genetics ·(unknown),Daria V. Zhernakova,Trang Le,Alexander Kurilshikov,Biljana Atanasovska,Marc Jan Bonder,Serena Sanna,Annique Claringbould,Urmo Võsa,Patrick Deelen,Lude Franke,Rudolf A. de Boer,Folkert Kuipers,Mihai G. Netea,Marten H. Hofker,Cisca Wijmenga,Alexandra Zhernakova,Jingyuan Fu	62
13	Multi-tissue DNA methylation age predictor in mouse 2017 ·Genome biology ·(unknown),Thomas M. Stubbs,Marc Jan Bonder,Anne‐Katrien Stark,Felix Krueger,Ferdinand von Meyenn,Oliver Stegle,Wolf Reik	255
14	The influence of a short-term gluten-free diet on the human gut microbiome 2016 ·Genome Medicine ·Marc Jan Bonder,Ettje F. Tigchelaar,Xianghang Cai,Gosia Trynka,María Carmen Cénit,Barbara Hrdličková,Huanzi Zhong,Tommi Vatanen,Dirk Gevers,Cisca Wijmenga,Yang Wang,Alexandra Zhernakova	201
15	Evidence for mitochondrial genetic control of autosomal gene expression 2016 ·Human Molecular Genetics ·Irfahan Kassam,(unknown),Luke R. Lloyd‐Jones,Alexander Holloway,Marc Jan Bonder,Anjali K. Henders,Nicholas G. Martin,Joseph E. Powell,Lude Franke,Grant W. Montgomery,Peter M. Visscher,Allan F. McRae	6
16	Proton pump inhibitors affect the gut microbiomebreakdown → 2015 ·Gut ·Floris Imhann,Marc Jan Bonder,Arnau Vich Vila,Jingyuan Fu,Zlatan Mujagic,Lisa Vork,Ettje F. Tigchelaar,Soesma A. Jankipersadsing,María Carmen Cénit,Hermie J. M. Harmsen,Gerard Dijkstra,Lude Franke,Ramnik J. Xavier,Daisy Jonkers,Cisca Wijmenga,Rinse K. Weersma,Alexandra Zhernakova	935
17	Genetic and epigenetic regulation of gene expression in fetal and adult human livers 2014 ·BMC Genomics ·Marc Jan Bonder,Silva Kasela,Mart Kals,Riin Tamm,Kaie Lokk,Isabel Barragán,Wim A. Buurman,Patrick Deelen,Jan-Willem M. Greve,Maxim Ivanov,Sander S. Rensen,Jana V. van Vliet‐Ostaptchouk,Marcel G. M. Wolfs,Jingyuan Fu,Marten H. Hofker,Cisca Wijmenga,Alexandra Zhernakova,Magnus Ingelman‐Sundberg,Lude Franke,Lili Milani	93
18	Breast Cancer Subtype Specific Classifiers of Response to Neoadjuvant Chemotherapy Do Not Outperform Classifiers Trained on All Subtypes 2014 ·PLoS ONE ·Jorma J. de Ronde,Marc Jan Bonder,Esther H. Lips,Sjoerd Rodenhuis,Lodewyk F.A. Wessels	5
19	Genotype harmonizer: automatic strand alignment and format conversion for genotype data integration 2014 ·BMC Research Notes ·Patrick Deelen,Marc Jan Bonder,(unknown),Harm-Jan Westra,(unknown),Dennis Hendriksen,Lude Franke,Morris A. Swertz	76
20	The Relation between Oral Candida Load and Bacterial Microbiome Profiles in Dutch Older Adults 2012 ·PLoS ONE ·Eefje A. Kraneveld,Mark J. Buijs,Marc Jan Bonder,Marjolein Visser,Bart J. F. Keijser,Wim Crielaard,Egija Zaura	88

About Marc Jan Bonder

Marc Jan Bonder is a scholar working on Gastroenterology, Molecular Biology and Aging, having authored 46 papers that have together received 5.1k indexed citations. Recurring topics across this work include Gut microbiota and health (15 papers), Epigenetics and DNA Methylation (14 papers) and Genetic Associations and Epidemiology (7 papers). The work is most often cited by research in Gastroenterology (584 citations), Biological Psychiatry (239 citations) and Aging (116 citations). Marc Jan Bonder has collaborated with scholars based in Netherlands, United Kingdom and United States. Frequent co-authors include Cisca Wijmenga, Alexandra Zhernakova, Jingyuan Fu, Ramnik J. Xavier, Lude Franke, Rinse K. Weersma, Floris Imhann, Arnau Vich Vila, María Carmen Cénit and Ettje F. Tigchelaar. Their work appears in journals such as Cell, Nucleic Acids Research and Nature Communications.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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