Joachim Johansen

2.2k total citations · 2 hit papers
13 papers, 759 citations indexed

About

Joachim Johansen is a scholar working on Molecular Biology, Ecology and Infectious Diseases. According to data from OpenAlex, Joachim Johansen has authored 13 papers receiving a total of 759 indexed citations (citations by other indexed papers that have themselves been cited), including 10 papers in Molecular Biology, 5 papers in Ecology and 1 paper in Infectious Diseases. Recurrent topics in Joachim Johansen's work include Gut microbiota and health (7 papers), Genomics and Phylogenetic Studies (5 papers) and Microbial Community Ecology and Physiology (3 papers). Joachim Johansen is often cited by papers focused on Gut microbiota and health (7 papers), Genomics and Phylogenetic Studies (5 papers) and Microbial Community Ecology and Physiology (3 papers). Joachim Johansen collaborates with scholars based in Denmark, United States and Greenland. Joachim Johansen's co-authors include Simon Rasmussen, Jakob Nybo Nissen, Henrik Bjørn Nielsen, Lars Juhl Jensen, Ole Winther, José Juan Almagro Armenteros, Rosa Lundbye Allesøe, Thomas Nordahl Petersen, Casper Kaae Sønderby and Svetlana Kutuzova and has published in prestigious journals such as Nature Communications, SHILAP Revista de lepidopterología and Immunity.

In The Last Decade

Joachim Johansen

11 papers receiving 753 citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Improved metagenome binning and assembly using deep variational autoencoders

2021 304 citations Jakob Nybo Nissen, Joachim Johansen et al. Nature Biotechnology profile →
Machine learning and deep learning applications in microbiome research

2022 159 citations Svetlana Kutuzova, Knud Nor Nielsen et al. SHILAP Revista de lepidopterología profile →

Peers

Joachim Johansen

MB

ECOLO

PS

ID

POLLU

Laura Lebrun Luxembourg

Guanhua Deng China

Janey Lee United States

Sarah J. Spencer United States

Victoria Suárez-Ulloa United States

Katrin Weidenbach Germany

Suzan Yilmaz United States

Youngik Yang United States

Bhakti Basu India

Roxana Jalili United States

Laura Lebrun Luxembourg

Joachim Johansen

448 ×0.9

MB

245 ×1.0

ECOLO

30 ×0.5

PS

39 ×0.7

ID

51 ×1.0

POLLU

Citations per year, relative to Joachim Johansen Joachim Johansen (= 1×) peers Laura Lebrun

Countries citing papers authored by Joachim Johansen

Since Specialization

Citations

This map shows the geographic impact of Joachim Johansen's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Joachim Johansen with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Joachim Johansen more than expected).

Fields of papers citing papers by Joachim Johansen

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Joachim Johansen. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Joachim Johansen. The network helps show where Joachim Johansen may publish in the future.

Co-authorship network of co-authors of Joachim Johansen

This figure shows the co-authorship network connecting the top 25 collaborators of Joachim Johansen. A scholar is included among the top collaborators of Joachim Johansen based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Joachim Johansen. Joachim Johansen is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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13 of 13 papers shown

1.

Jabbar, Karolina S., Sambhawa Priya, Jiawu Xu, et al.. (2025). Human immunodeficiency virus and antiretroviral therapies exert distinct influences across diverse gut microbiomes. Nature Microbiology. 10(11). 2720–2735.

2.

Johansen, Joachim, Frederik Filip Stæger, Dennis Sandris Nielsen, et al.. (2024). Gut heavy metal and antibiotic resistome of humans living in the high Arctic. Frontiers in Microbiology. 15. 1493803–1493803.

3.

Myers, Pernille Neve, et al.. (2024). CHAMP delivers accurate taxonomic profiles of the prokaryotes, eukaryotes, and bacteriophages in the human microbiome. Frontiers in Microbiology. 15. 1425489–1425489. 6 indexed citations

4.

Johansen, Joachim, Koji Atarashi, Yasumichi Arai, et al.. (2023). Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan. Nature Microbiology. 8(6). 1064–1078. 54 indexed citations

5.

Jespersen, Marie Louise, Patrick Munk, Joachim Johansen, et al.. (2023). Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering. Communications Biology. 6(1). 700–700. 6 indexed citations

6.

Johansen, Joachim, et al.. (2023). Adversarial and variational autoencoders improve metagenomic binning. Communications Biology. 6(1). 1073–1073. 15 indexed citations

7.

Schubert, Lisa, Ivo A. Hendriks, Wei Wu, et al.. (2022). SCAI promotes error‐free repair of DNA interstrand crosslinks via the Fanconi anemia pathway. EMBO Reports. 23(4). e53639–e53639. 12 indexed citations

8.

Johansen, Joachim, Damian R. Plichta, Jakob Nybo Nissen, et al.. (2022). Genome binning of viral entities from bulk metagenomics data. Nature Communications. 13(1). 965–965. 66 indexed citations

9.

Brown, Eric, Damian R. Plichta, Joachim Johansen, et al.. (2022). The CD4+ T cell response to a commensal-derived epitope transitions from a tolerant to an inflammatory state in Crohn’s disease. Immunity. 55(10). 1909–1923.e6. 31 indexed citations

10.

Kutuzova, Svetlana, Knud Nor Nielsen, Joachim Johansen, et al.. (2022). Machine learning and deep learning applications in microbiome research. SHILAP Revista de lepidopterología. 2(1). 98–98. 159 indexed citations breakdown →

11.

Nissen, Jakob Nybo, Joachim Johansen, Rosa Lundbye Allesøe, et al.. (2021). Improved metagenome binning and assembly using deep variational autoencoders. Nature Biotechnology. 39(5). 555–560. 304 indexed citations breakdown →

12.

Gallina, Irene, Ivo A. Hendriks, Saskia Hoffmann, et al.. (2020). The ubiquitin ligase RFWD3 is required for translesion DNA synthesis. Molecular Cell. 81(3). 442–458.e9. 60 indexed citations

13.

Johannessen, Tue, et al.. (2004). Flame Synthesis of Nanoparticles. Process Safety and Environmental Protection. 82(11). 1444–1452. 46 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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