Simon Rasmussen

36.7k total citations · 8 hit papers
86 papers, 11.3k citations indexed

About

Simon Rasmussen is a scholar working on Molecular Biology, Genetics and Epidemiology. According to data from OpenAlex, Simon Rasmussen has authored 86 papers receiving a total of 11.3k indexed citations (citations by other indexed papers that have themselves been cited), including 37 papers in Molecular Biology, 18 papers in Genetics and 15 papers in Epidemiology. Recurrent topics in Simon Rasmussen's work include Genomics and Phylogenetic Studies (11 papers), Gut microbiota and health (11 papers) and interferon and immune responses (6 papers). Simon Rasmussen is often cited by papers focused on Genomics and Phylogenetic Studies (11 papers), Gut microbiota and health (11 papers) and interferon and immune responses (6 papers). Simon Rasmussen collaborates with scholars based in Denmark, United States and United Kingdom. Simon Rasmussen's co-authors include Frank M. Aarestrup, Ole Lund, Henrik Hasman, Salvatore Cosentino, Martin Vestergaard, Mikkel V. Larsen, Ea Zankari, Thomas Sicheritz‐Pontén, Søren R. Paludan and Mette Voldby Larsen and has published in prestigious journals such as Nature, Cell and Proceedings of the National Academy of Sciences.

In The Last Decade

Simon Rasmussen

82 papers receiving 11.1k citations

Hit Papers

Identification of acquired antimicrobial resistance genes 2006 2026 2012 2019 2012 2012 2006 2013 2021 1000 2.0k 3.0k
What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

  1. Identification of acquired antimicrobial resistance genes
    2012 3.8k citations Simon Rasmussen et al. profile →
  2. Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
    2012 1.7k citations Simon Rasmussen et al. profile →
  3. Double-Stranded RNA Is Produced by Positive-Strand RNA Viruses and DNA Viruses but Not in Detectable Amounts by Negative-Strand RNA Viruses
    2006 756 citations Friedemann Weber, Valentina Wagner et al. Journal of Virology profile →
  4. Transcriptome Responses to Combinations of Stresses in Arabidopsis  
    2013 387 citations Simon Rasmussen, Henrik Bjørn Nielsen et al. profile →
  5. Improved metagenome binning and assembly using deep variational autoencoders
    2021 304 citations Jakob Nybo Nissen, Joachim Johansen et al. Nature Biotechnology profile →
  6. Machine learning and deep learning applications in microbiome research
    2022 159 citations Svetlana Kutuzova, Joachim Johansen et al. profile →
  7. Noninvasive proteomic biomarkers for alcohol-related liver disease
    2022 154 citations Lili Niu, Maja Thiele et al. Nature Medicine profile →
  8. Re-theorising mobility and the formation of culture and language among the Corded Ware Culture in Europe
    2017 128 citations Kristian Kristiansen, Morten E. Allentoft et al. Antiquity profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Simon Rasmussen Denmark 38 4.2k 3.2k 2.1k 1.9k 1.8k 86 11.3k
Louise M. Judd Australia 46 5.7k 1.4× 3.6k 1.1× 2.1k 1.0× 2.5k 1.3× 1.1k 0.6× 113 12.3k
Fiona S. L. Brinkman Canada 52 8.1k 1.9× 1.8k 0.6× 1.4k 0.7× 2.6k 1.4× 1.4k 0.8× 111 13.2k
Ryan R. Wick Australia 34 6.6k 1.6× 5.3k 1.6× 2.9k 1.4× 3.3k 1.8× 1.4k 0.8× 68 13.4k
Douglas R. Call United States 55 2.8k 0.7× 1.6k 0.5× 1.8k 0.9× 1.3k 0.7× 1.1k 0.6× 250 9.5k
Mark J. Pallen United Kingdom 62 5.2k 1.3× 1.4k 0.5× 2.9k 1.4× 1.9k 1.0× 2.5k 1.4× 192 11.4k
Kok‐Gan Chan Malaysia 66 7.4k 1.8× 1.4k 0.4× 2.2k 1.0× 1.8k 1.0× 1.0k 0.6× 442 15.5k
David A. Rasko United States 60 6.6k 1.6× 2.4k 0.7× 4.9k 2.3× 2.3k 1.2× 2.8k 1.6× 195 13.5k
David W. Ussery Denmark 50 8.8k 2.1× 1.5k 0.5× 2.3k 1.1× 3.8k 2.0× 1.3k 0.7× 177 14.3k
Thomas Sicheritz‐Pontén Denmark 38 5.2k 1.3× 1.4k 0.4× 1.1k 0.5× 2.1k 1.1× 1.0k 0.6× 95 9.8k
Lance B. Price United States 54 2.9k 0.7× 1.7k 0.5× 1.3k 0.6× 1.5k 0.8× 1.6k 0.9× 129 8.3k

Countries citing papers authored by Simon Rasmussen

Since Specialization
Citations

This map shows the geographic impact of Simon Rasmussen's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Simon Rasmussen with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Simon Rasmussen more than expected).

Fields of papers citing papers by Simon Rasmussen

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Simon Rasmussen. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Simon Rasmussen. The network helps show where Simon Rasmussen may publish in the future.

Co-authorship network of co-authors of Simon Rasmussen

This figure shows the co-authorship network connecting the top 25 collaborators of Simon Rasmussen. A scholar is included among the top collaborators of Simon Rasmussen based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Simon Rasmussen. Simon Rasmussen is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Ravn, Kirstine, Jonas Meisner, Michael E. Benros, et al.. (2025). Tracing the evolutionary history of the CCR5delta32 deletion via ancient and modern genomes. Cell. 188(14). 3679–3695.e16.
2.
Webel, Henry, Yasset Pérez‐Riverol, Annelaura Bach Nielsen, & Simon Rasmussen. (2024). Mass spectrometry-based proteomics data from thousands of HeLa control samples. Scientific Data. 11(1). 112–112. 6 indexed citations
3.
Johansen, Joachim, Frederik Filip Stæger, Dennis Sandris Nielsen, et al.. (2024). Gut heavy metal and antibiotic resistome of humans living in the high Arctic. Frontiers in Microbiology. 15. 1493803–1493803.
4.
Kutuzova, Svetlana, et al.. (2024). Taxometer: Improving taxonomic classification of metagenomics contigs. Nature Communications. 15(1). 8357–8357. 9 indexed citations
5.
Koutrouli, Mikaela, Katerina Nastou, Robbin Bouwmeester, et al.. (2024). FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data. Bioinformatics. 40(2). 4 indexed citations
6.
Neuenschwander, Samuel, Diana Ivette Cruz Dávalos, Bárbara Sousa da Mota, et al.. (2023). Mapache: a flexible pipeline to map ancient DNA. Bioinformatics. 39(2). 9 indexed citations
7.
Schubert, Lisa, Ivo A. Hendriks, Wei Wu, et al.. (2022). SCAI promotes error‐free repair of DNA interstrand crosslinks via the Fanconi anemia pathway. EMBO Reports. 23(4). e53639–e53639. 12 indexed citations
8.
Niu, Lili, Maja Thiele, Philipp E. Geyer, et al.. (2022). Noninvasive proteomic biomarkers for alcohol-related liver disease. Nature Medicine. 28(6). 1277–1287. 154 indexed citations breakdown →
9.
Johansen, Joachim, Damian R. Plichta, Jakob Nybo Nissen, et al.. (2022). Genome binning of viral entities from bulk metagenomics data. Nature Communications. 13(1). 965–965. 66 indexed citations
10.
Allesøe, Rosa Lundbye, Ron Nudel, Wesley K. Thompson, et al.. (2022). Deep learning–based integration of genetics with registry data for stratification of schizophrenia and depression. Science Advances. 8(26). eabi7293–eabi7293. 11 indexed citations
11.
Nudel, Ron, Rosa Lundbye Allesøe, Wesley K. Thompson, et al.. (2021). A large-scale investigation into the role of classical HLA loci in multiple types of severe infections, with a focus on overlaps with autoimmune and mental disorders. Journal of Translational Medicine. 19(1). 230–230. 7 indexed citations
12.
Nissen, Jakob Nybo, Joachim Johansen, Rosa Lundbye Allesøe, et al.. (2021). Improved metagenome binning and assembly using deep variational autoencoders. Nature Biotechnology. 39(5). 555–560. 304 indexed citations breakdown →
13.
Nudel, Ron, Michael E. Benros, Morten Dybdahl Krebs, et al.. (2019). Immunity and mental illness: findings from a Danish population-based immunogenetic study of seven psychiatric and neurodevelopmental disorders. European Journal of Human Genetics. 27(9). 1445–1455. 36 indexed citations
14.
Ahlberg, Gustav, Lena Refsgaard, Pia R. Lundegaard, et al.. (2018). Rare truncating variants in the sarcomeric protein titin associate with familial and early-onset atrial fibrillation. Nature Communications. 9(1). 4316–4316. 83 indexed citations
15.
Kristiansen, Kristian, Morten E. Allentoft, Karin Margarita Frei, et al.. (2017). Re-theorising mobility and the formation of culture and language among the Corded Ware Culture in Europe. Antiquity. 91(356). 334–347. 128 indexed citations breakdown →
16.
Esposti, Mauro Degli, Diego Cortez, Luis Lozano, et al.. (2016). Alpha proteobacterial ancestry of the [Fe-Fe]-hydrogenases in anaerobic eukaryotes. Biology Direct. 11(1). 34–34. 22 indexed citations
17.
Almeida, Mathieu, Anne‐Laure Abraham, Simon Rasmussen, et al.. (2014). Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products. BMC Genomics. 15(1). 1101–1101. 57 indexed citations
18.
Nielsen, Henrik Bjørn, Mathieu Almeida, Agnieszka Sierakowska Juncker, et al.. (2014). A method for identifying metagenomic species and variable genetic elements by exhaustive co-abundance binning. Nature Biotechnology. 1 indexed citations
19.
Rasmussen, Simon, Kristy Horan, Christian K. Holm, et al.. (2011). Activation of Autophagy by α-Herpesviruses in Myeloid Cells Is Mediated by Cytoplasmic Viral DNA through a Mechanism Dependent on Stimulator of IFN Genes. The Journal of Immunology. 187(10). 5268–5276. 84 indexed citations
20.
Weber, Friedemann, Valentina Wagner, Simon Rasmussen, Rune Hartmann, & Søren R. Paludan. (2006). Double-Stranded RNA Is Produced by Positive-Strand RNA Viruses and DNA Viruses but Not in Detectable Amounts by Negative-Strand RNA Viruses. Journal of Virology. 80(10). 5059–5064. 756 indexed citations breakdown →

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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