Malachi Griffith

25.6k citations

100 papers · 6.5k · 4 hit papers · h-index 35

Impact in

Cancer Research top 0.5%
- Cancer Genomics and Diagnostics
- MicroRNA in disease regulation
- Cancer-related molecular mechanisms research
Molecular Biology top 1%
- RNA modifications and cancer
- RNA Research and Splicing
- Bioinformatics and Genomic Networks

Papers in

Molecular Biology 62
- RNA modifications and cancer 13
- vaccines and immunoinformatics approaches 13
- Genomics and Phylogenetic Studies 9
- RNA Research and Splicing 9
- Bioinformatics and Genomic Networks 9
Cancer Research 32
- Cancer Genomics and Diagnostics 25

Co-authors: Obi L. Griffith (68 shared papers)Alex H. Wagner (11 shared papers)Marco A. Marra (10 shared papers)Elaine R. Mardis (26 shared papers)Adam Coffman (8 shared papers)Kelsy C. Cotto (16 shared papers)Susanna Kiwala (13 shared papers)Martin Hirst (4 shared papers)
Journals: Cancer Research (8 papers)Blood (6 papers)Nucleic Acids Research (6 papers)Genome Research (5 papers)Cell Reports (4 papers)
Partner nations: United States Canada Switzerland

In The Last Decade

Malachi Griffith

92 papers receiving 6.5k citations

Hit Papers

align trajectories log scale

DGIdb 5.0: rebuilding the drug–gene interaction database for precision medicine and drug discovery platforms 2023 · 142 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2023 Nucleic Acids Research
2020 Nucleic Acids Research
2017 Nucleic Acids Research
2008 Genome Research

Peers

Countries citing papers authored by Malachi Griffith

Since Specialization

Citations

This map shows the geographic impact of Malachi Griffith's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Malachi Griffith with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Malachi Griffith more than expected).

Fields of papers citing papers by Malachi Griffith

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Malachi Griffith. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Malachi Griffith. The network helps show where Malachi Griffith may publish in the future.

Co-authors

The 25 scholars most cited alongside Malachi Griffith, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Malachi Griffith Line = papers co-authored together Malachi Griffith links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 100 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells Genome Research ·Ryan D. Morin, Michael D. O’Connor, Malachi Griffith, Florian Kuchenbauer, Allen Delaney, Anna‐Liisa Prabhu, Yongjun Zhao, Helen McDonald, Thomas Zeng, Martin Hirst, Connie J. Eaves, Marco A. Marra Hit paper breakdown →	2008	874
2	Integration of the Drug–Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts Nucleic Acids Research ·Sharon L. Freshour, Susanna Kiwala, Kelsy C. Cotto, Adam Coffman, Joshua F. McMichael, Jonathan J Song, Malachi Griffith, Obi L. Griffith, Alex H. Wagner Hit paper breakdown →	2020	580
3	DGIdb 3.0: a redesign and expansion of the drug–gene interaction database Nucleic Acids Research ·Kelsy C. Cotto, Alex H. Wagner, Yang-Yang Feng, Susanna Kiwala, Adam Coffman, Gregory C. Spies, Alex Wollam, Nicholas C. Spies, Obi L. Griffith, Malachi Griffith Hit paper breakdown →	2017	551
4	deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data PLoS Computational Biology ·Andrew McPherson, Fereydoun Hormozdiari, Abdalnasser Zayed, Ryan Giuliany, Gavin Ha, Mark Sun, Malachi Griffith, Alireza Heravi Moussavi, Janine Senz, Nataliya Melnyk, Marina Pacheco, Marco A. Marra, Martin Hirst, Torsten O. Nielsen, S. Cenk Şahinalp, David G. Huntsman, Sohrab P. Shah	2011	325
5	SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution PLoS Computational Biology ·Christopher A. Miller, Brian S. White, Nathan D. Dees, Malachi Griffith, John S. Welch, Obi L. Griffith, Ravi Vij, Michael H. Tomasson, Timothy A. Graubert, Matthew J. Walter, Matthew J. Ellis, William Schierding, John F. DiPersio, Timothy J. Ley, Elaine R. Mardis, Richard K. Wilson, Li Ding	2014	281
6	pVAC-Seq: A genome-guided in silico approach to identifying tumor neoantigens Genome Medicine ·Jasreet Hundal, Beatriz M. Carreno, Allegra A. Petti, Gerald P. Linette, Obi L. Griffith, Elaine R. Mardis, Malachi Griffith	2016	267
7	Functional Heterogeneity of Genetically Defined Subclones in Acute Myeloid Leukemia Cancer Cell ·Jeffery M. Klco, David H. Spencer, Chris Miller, Malachi Griffith, Tamara Lamprecht, Michelle D. O’Laughlin, Catrina C. Fronick, Vincent Magrini, Ryan Demeter, Robert S. Fulton, William Eades, Daniel C. Link, Timothy A. Graubert, Matthew J. Walter, Elaine R. Mardis, John F. DiPersio, Richard K. Wilson, T J Ley	2014	264
8	DGIdb 2.0: mining clinically relevant drug–gene interactions Nucleic Acids Research ·Alex H. Wagner, Adam Coffman, Benjamin J. Ainscough, Nicholas C. Spies, Zachary L. Skidmore, Katie M. Campbell, Kilannin Krysiak, Deng Pan, Joshua F. McMichael, James M. Eldred, Jason Walker, Richard K. Wilson, Elaine R. Mardis, Malachi Griffith, Obi L. Griffith	2015	262
9	Mutant U2AF1 Expression Alters Hematopoiesis and Pre-mRNA Splicing In Vivo Cancer Cell ·Cara Lunn Shirai, James N. Ley, Brian S. White, Sanghyun P. Kim, Justin Tibbitts, Jin Shao, Matthew Ndonwi, Brian A. Wadugu, Eric J. Duncavage, Theresa Okeyo-Owuor, Tuoen Liu, Malachi Griffith, Sean McGrath, Vincent Magrini, Robert S. Fulton, Catrina C. Fronick, Michelle D. O’Laughlin, Timothy A. Graubert, Matthew J. Walter	2015	211
10	GenVisR: Genomic Visualizations in R Bioinformatics ·Zachary L. Skidmore, Alex H. Wagner, Robert Lesurf, Katie M. Campbell, Jason Kunisaki, Obi L. Griffith, Malachi Griffith	2016	209
11	pVACtools: A Computational Toolkit to Identify and Visualize Cancer Neoantigens Cancer Immunology Research ·Jasreet Hundal, Susanna Kiwala, Joshua F. McMichael, Christopher A. Miller, Huiming Xia, Alexander T. Wollam, Connor J. Liu, Sidi Zhao, Yang-Yang Feng, Aaron Graubert, Amber Z. Wollam, Jonas Neichin, Megan N. Thomas, Jason Walker, William E. Gillanders, Elaine R. Mardis, Obi L. Griffith, Malachi Griffith	2020	145
12	Best practices for bioinformatic characterization of neoantigens for clinical utility Genome Medicine ·Megan M. Richters, Huiming Xia, Katie M. Campbell, William E. Gillanders, Obi L. Griffith, Malachi Griffith	2019	143
13	In-depth characterization of the microRNA transcriptome in a leukemia progression model Genome Research ·Florian Kuchenbauer, Ryan D. Morin, Bob Argiropoulos, Oleh I. Petriv, Malachi Griffith, Michael Heuser, Eric Yung, Jessica Piper, Allen Delaney, Anna‐Liisa Prabhu, Yongjun Zhao, Helen McDonald, Thomas Zeng, Martin Hirst, Carl L. Hansen, Marco A. Marra, R. Keith Humphries	2008	143
14	DGIdb 5.0: rebuilding the drug–gene interaction database for precision medicine and drug discovery platforms Nucleic Acids Research ·Matthew Cannon, James Stevenson, Kathryn Stahl, Rohit Basu, Adam Coffman, Susanna Kiwala, Joshua F. McMichael, Kori Kuzma, Dorian Morrissey, Kelsy C. Cotto, Elaine R. Mardis, Obi L. Griffith, Malachi Griffith, Alex H. Wagner Hit paper breakdown →	2023	142
15	Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach BMC Genomics ·Matthew N. Bainbridge, Robin M. Warren, Martin Hirst, Tammy L Romanuik, Thomas Zeng, Anne Go, Allen Delaney, Malachi Griffith, Matthew T. Hickenbotham, Vincent Magrini, Elaine R. Mardis, Marianne D. Sadar, Asim Siddiqui, Marco A. Marra, Steven J.M. Jones	2006	137
16	Single-agent ibrutinib in relapsed or refractory follicular lymphoma: a phase 2 consortium trial Blood ·Nancy L. Bartlett, Brian A. Costello, Betsy LaPlant, Stephen M. Ansell, John Kuruvilla, Craig B. Reeder, Lim Soon Thye, Daniel M. Anderson, Kilannin Krysiak, Cody A. Ramirez, Jing Qi, Barry A. Siegel, Malachi Griffith, Obi L. Griffith, Felicia Gomez, Todd A. Fehniger	2017	110
17	Recurrent somatic mutations affecting B-cell receptor signaling pathway genes in follicular lymphoma Blood ·Kilannin Krysiak, Felicia Gomez, Brian S. White, Matthew K. Matlock, Christopher A. Miller, Lee Trani, Catrina C. Fronick, Robert S. Fulton, Friederike Kreisel, Amanda F. Cashen, Kenneth R. Carson, Melissa M. Berrien-Elliott, Nancy L. Bartlett, Malachi Griffith, Obi L. Griffith, Todd A. Fehniger	2016	110
18	ORegAnno 3.0: a community-driven resource for curated regulatory annotation Nucleic Acids Research ·Robert Lesurf, Kelsy C. Cotto, Grace Wang, Malachi Griffith, (unknown), Steven J.M. Jones, Stephen B. Montgomery, Obi L. Griffith	2015	107
19	Neoantigen prediction and computational perspectives towards clinical benefit: recommendations from the ESMO Precision Medicine Working Group Annals of Oncology ·Leticia De Mattos‐Arruda, Miguél Vázquez, Francesca Finotello, Rosalba Lepore, (unknown), Jasreet Hundal, Pep Amengual-Rigo, Charlotte K.Y. Ng, Alfonso Valencia, Jorge Carrillo, Timothy A. Chan, Vı́ctor Guallar, Nicholas McGranahan, Julià Blanco, Malachi Griffith	2020	99
20	U2AF1 mutations alter sequence specificity of pre-mRNA binding and splicing Leukemia ·Theresa Okeyo-Owuor, Brian S. White, Rakesh Chatrikhi, Dipika R. Mohan, Sanghyun P. Kim, Malachi Griffith, Li Ding, Shamika Ketkar-Kulkarni, Jasreet Hundal, Kholiswa M. Laird, Clara L. Kielkopf, Timothy J. Ley, Matthew J. Walter, Timothy A. Graubert	2014	97

About Malachi Griffith

Malachi Griffith is a scholar working on Molecular Biology, Cancer Research, Immunology, Oncology and Genetics, having authored 100 papers that have together received 6.5k indexed citations. Recurring topics across this work include Cancer Genomics and Diagnostics (25 papers), Immunotherapy and Immune Responses (16 papers), RNA modifications and cancer (13 papers), vaccines and immunoinformatics approaches (13 papers), Genomics and Phylogenetic Studies (9 papers), RNA Research and Splicing (9 papers), Bioinformatics and Genomic Networks (9 papers) and Genomics and Rare Diseases (9 papers). The work is most often cited by research in Cancer Research (2.2k citations), Molecular Biology (4.0k citations), Immunology (1.2k citations), Oncology (1.4k citations) and Hematology (478 citations). Malachi Griffith has collaborated with scholars based in United States, Canada and Switzerland. Frequent co-authors include Obi L. Griffith, Alex H. Wagner, Marco A. Marra, Elaine R. Mardis, Adam Coffman, Kelsy C. Cotto, Susanna Kiwala, Martin Hirst, Joshua F. McMichael and Allen Delaney. Their work appears in journals such as Cancer Research, Blood, Nucleic Acids Research, Genome Research and Cell Reports.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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Malachi Griffith

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Malachi Griffith

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About Malachi Griffith

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