Jonathan Chen

7.9k total citations · 1 hit paper
21 papers, 850 citations indexed

About

Jonathan Chen is a scholar working on Molecular Biology, Oncology and Immunology. According to data from OpenAlex, Jonathan Chen has authored 21 papers receiving a total of 850 indexed citations (citations by other indexed papers that have themselves been cited), including 12 papers in Molecular Biology, 7 papers in Oncology and 7 papers in Immunology. Recurrent topics in Jonathan Chen's work include Single-cell and spatial transcriptomics (6 papers), Cancer Immunotherapy and Biomarkers (6 papers) and Cancer Genomics and Diagnostics (4 papers). Jonathan Chen is often cited by papers focused on Single-cell and spatial transcriptomics (6 papers), Cancer Immunotherapy and Biomarkers (6 papers) and Cancer Genomics and Diagnostics (4 papers). Jonathan Chen collaborates with scholars based in United States, Italy and Czechia. Jonathan Chen's co-authors include Maryam Kherad Pezhouh, Gregory Y. Lauwers, Ricard Masia, Vikram Deshpande, Karin Pelka, Orit Rozenblatt–Rosen, Michael Dougan, Nir Hacohen, Aviv Regev and Genevieve M. Boland and has published in prestigious journals such as New England Journal of Medicine, Cell and Nature Genetics.

In The Last Decade

Jonathan Chen

19 papers receiving 848 citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics

2019 325 citations Leif S. Ludwig, Caleb A. Lareau et al. Cell profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Jonathan Chen United States	9	432	308	186	170	148	21	850
Kirsten Kübler Germany	15	344 0.8×	339 1.1×	276 1.5×	243 1.4×	88 0.6×	27	924
Markus Möbs Germany	19	237 0.5×	303 1.0×	240 1.3×	116 0.7×	183 1.2×	42	802
Hakim Bouamar United States	14	427 1.0×	195 0.6×	200 1.1×	325 1.9×	67 0.5×	31	779
Nuran Bektas Germany	13	642 1.5×	269 0.9×	206 1.1×	132 0.8×	71 0.5×	15	1.0k
Arthur Kwok Leung Cheung Hong Kong	18	698 1.6×	337 1.1×	117 0.6×	362 2.1×	56 0.4×	27	1.1k
Lisa Giulino‐Roth United States	15	411 1.0×	479 1.6×	237 1.3×	122 0.7×	90 0.6×	39	1.1k
Erica T. Goddard United States	12	228 0.5×	420 1.4×	120 0.6×	195 1.1×	62 0.4×	14	706
Consuelo Anzilotti United Kingdom	17	455 1.1×	258 0.8×	389 2.1×	55 0.3×	96 0.6×	24	1.1k
François Kuonen Switzerland	17	298 0.7×	287 0.9×	171 0.9×	148 0.9×	72 0.5×	42	712
Yi Zeng China	14	285 0.7×	442 1.4×	289 1.6×	164 1.0×	60 0.4×	27	802

Countries citing papers authored by Jonathan Chen

Since Specialization

Citations

This map shows the geographic impact of Jonathan Chen's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jonathan Chen with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jonathan Chen more than expected).

Fields of papers citing papers by Jonathan Chen

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jonathan Chen. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jonathan Chen. The network helps show where Jonathan Chen may publish in the future.

Co-authorship network of co-authors of Jonathan Chen

This figure shows the co-authorship network connecting the top 25 collaborators of Jonathan Chen. A scholar is included among the top collaborators of Jonathan Chen based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jonathan Chen. Jonathan Chen is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Millard, Nghia, Jonathan Chen, Karin Pelka, et al.. (2025). Batch correcting single-cell spatial transcriptomics count data with Crescendo improves visualization and detection of spatial gene patterns. Genome biology. 26(1). 36–36. 1 indexed citations

Ho, Alice Y., Stephen L. Shiao, Jonathan Chen, et al.. (2024). PEARL: A Phase Ib/II Biomarker Study of Adding Radiation Therapy to Pembrolizumab Before Neoadjuvant Chemotherapy in Human Epidermal Growth Factor Receptor 2–Negative Breast Cancer. Journal of Clinical Oncology. 42(36). 4282–4293. 6 indexed citations

Chen, Jonathan & Justin F. Gainor. (2024). Spatial biology captures the effects of neoadjuvant chemo-immunotherapy in lung cancer. Nature Genetics. 57(1). 6–8.

Yao, Hongcheng, Vjola Jorgji, David Lieb, et al.. (2024). Abstract 6555: scRNAseq and TCR repertoire analysis identifies immune correlates of response to combined BRAF/MEK/PD1 inhibition in a phase 2 trial. Cancer Research. 84(6_Supplement). 6555–6555.

Thakur, Abhimanyu, Amanda Johnson, Emily G. Jacobs, et al.. (2022). Energy Sources for Exosome Communication in a Cancer Microenvironment. Cancers. 14(7). 1698–1698. 41 indexed citations

Tian, Jun, Jonathan Chen, Sherry Chao, et al.. (2022). Abstract LB003: Combined BRAF, MEK, and PD-1 inhibition in BRAFV600E colorectal cancer patients: Correlative studies from a phase 2 trial. Cancer Research. 82(12_Supplement). LB003–LB003. 1 indexed citations

Tsuboyama, Kotaro, Justas Dauparas, Jonathan Chen, et al.. (2022). Mega-scale experimental analysis of protein folding stability in biology and protein design. Zenodo (CERN European Organization for Nuclear Research). 3 indexed citations

Price, Colles, Jonathan Chen, Sherry Chao, et al.. (2022). Abstract 2030: A single-cell spatially resolved map of colorectal cancer identifies novel spatial relationships between cancer cells and the microenvironment. Cancer Research. 82(12_Supplement). 2030–2030. 3 indexed citations

Chen, Jonathan, Karin Pelka, Matan Hofree, et al.. (2021). Multicellular immune hubs and their organization in MMRd and MMRp colorectal cancer. The Journal of Immunology. 206(1_Supplement). 68.13–68.13. 3 indexed citations

10.

Chen, Jonathan, Karin Pelka, Jiang He, et al.. (2021). 920 A single-cell spatially resolved MERFISH map of the colorectal tumor immune microenvironment. SHILAP Revista de lepidopterología. A965–A965. 2 indexed citations

11.

Badran, Yousef R., Angela Shih, Donna Leet, et al.. (2020). Immune checkpoint inhibitor-associated celiac disease. Journal for ImmunoTherapy of Cancer. 8(1). e000958–e000958. 45 indexed citations

12.

Yamazaki, Takahiro, Aitziber Buqué, Marissa Rybstein, et al.. (2019). Methods to Detect Immunogenic Cell Death In Vivo. Methods in molecular biology. 2055. 433–452. 8 indexed citations

13.

Ludwig, Leif S., Caleb A. Lareau, Jacob C. Ulirsch, et al.. (2019). Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics. Cell. 176(6). 1325–1339.e22. 325 indexed citations breakdown →

14.

Zhang, M. Lisa, Azfar Neyaz, Deepa T. Patil, et al.. (2019). Immune‐related adverse events in the gastrointestinal tract: diagnostic utility of upper gastrointestinal biopsies. Histopathology. 76(2). 233–243. 78 indexed citations

15.

Chen, Jonathan & Vikram Deshpande. (2018). Inflammatory Nodules Identify Steroid-Responsive Primary Sclerosing Cholangitis. International Journal of Surgical Pathology. 26(5). 402–409. 1 indexed citations

16.

Chen, Jonathan & Vikram Deshpande. (2017). IgG4-related Disease and the Liver. Gastroenterology Clinics of North America. 46(2). 195–216. 29 indexed citations

17.

Drachman, Douglas E., et al.. (2017). Case 27-2017. New England Journal of Medicine. 377(9). 874–882. 4 indexed citations

18.

Chen, Jonathan, Maryam Kherad Pezhouh, Gregory Y. Lauwers, & Ricard Masia. (2017). Histopathologic Features of Colitis Due to Immunotherapy With Anti-PD-1 Antibodies. The American Journal of Surgical Pathology. 41(5). 643–654. 134 indexed citations

19.

Sung, Derek C., Caitlin J. Bowen, Jingjing Zhou, et al.. (2016). Cadherin-11 Overexpression Induces Extracellular Matrix Remodeling and Calcification in Mature Aortic Valves. Arteriosclerosis Thrombosis and Vascular Biology. 36(8). 1627–1637. 45 indexed citations

20.

Carvunis, Anne‐Ruxandra, Tina Wang, Dylan Skola, et al.. (2015). Evidence for a common evolutionary rate in metazoan transcriptional networks. eLife. 4. 22 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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