Sergey Ovchinnikov

31.5k citations

71 papers · 10.6k indexed · 12 hit papers · h-index 31

Co-authors: Milot Mirdita Yoshitaka Moriwaki Martin Steinegger Konstantin Schütze Lim Heo David Baker Hetunandan Kamisetty Hahnbeom Park
Topics: Protein Structure and Dynamics (41 papers)RNA and protein synthesis mechanisms (26 papers)Enzyme Structure and Function (18 papers)
Cited by: Molecular Biology Structural Biology Cell Biology
Journals: Nature Science Cell
Partner nations: United States China Israel

In The Last Decade

Sergey Ovchinnikov

68 papers receiving 10.5k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

ColabFold: making protein folding accessible to all

2022 5.0k citations Sergey Ovchinnikov et al. profile →
Improved protein structure prediction using predicted interresidue orientations

2020 925 citations Jianyi Yang, Ivan Anishchenko et al. Proceedings of the National Academy of Sciences profile →
Assessing the utility of coevolution-based residue–residue contact predictions in a sequence- and structure-rich era

2013 490 citations Hetunandan Kamisetty, Sergey Ovchinnikov et al. Proceedings of the National Academy of Sciences profile →
Robust and accurate prediction of residue–residue interactions across protein interfaces using evolutionary information

2014 452 citations Sergey Ovchinnikov, Hetunandan Kamisetty et al. profile →
Protein structure determination using metagenome sequence data

2017 350 citations Sergey Ovchinnikov, Hahnbeom Park et al. Science profile →
De novo protein design by deep network hallucination

2021 334 citations Ivan Anishchenko, Samuel J. Pellock et al. Nature profile →
De novo design of a fluorescence-activating β-barrel

2018 249 citations Hahnbeom Park, Matthew J. Bick et al. Nature profile →
Predicting multiple conformations via sequence clustering and AlphaFold2

2023 233 citations Sergey Ovchinnikov et al. Nature profile →
Protein interaction networks revealed by proteome coevolution

2019 150 citations Qian Cong, Ivan Anishchenko et al. Science profile →
Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3

2017 143 citations Wei Mi, Sergey Ovchinnikov et al. Nature profile →
Mega-scale experimental analysis of protein folding stability in biology and design

2023 139 citations Kotaro Tsuboyama, Justas Dauparas et al. Nature profile →
Computational design of soluble and functional membrane protein analogues

2024 40 citations Casper A. Goverde, Martin Pačesa et al. Nature profile →

Peers

Countries citing papers authored by Sergey Ovchinnikov

Since Specialization

Citations

This map shows the geographic impact of Sergey Ovchinnikov's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Sergey Ovchinnikov with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Sergey Ovchinnikov more than expected).

Fields of papers citing papers by Sergey Ovchinnikov

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Sergey Ovchinnikov. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Sergey Ovchinnikov. The network helps show where Sergey Ovchinnikov may publish in the future.

Co-authorship network of co-authors of Sergey Ovchinnikov

This figure shows the co-authorship network connecting the top 25 collaborators of Sergey Ovchinnikov. A scholar is included among the top collaborators of Sergey Ovchinnikov based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Sergey Ovchinnikov. Sergey Ovchinnikov is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Cyclic peptide structure prediction and design using AlphaFold2 2025 ·Nature Communications ·Stephen Rettie,(unknown),Asim K. Bera,Alex Kang,(unknown),Yensi Flores Bueso,(unknown),Maggie Ahlrichs,(unknown),Stacey Gerben,Mila Lamb,(unknown),(unknown),Guangfeng Zhou,Frank DiMaio,Sergey Ovchinnikov,Gaurav Bhardwaj	15
2	Disentanglement of Evolutionary Constraints in Statistical Models of Proteins 2024 ·Haobo Wang,(unknown),Kotaro Tsuboyama,Sirui Liu,Sugyan M. Dixit,Sergey Ovchinnikov	1
3	An atlas of protein homo-oligomerization across domains of life 2024 ·Cell ·(unknown),Martin Pačesa,(unknown),Casper A. Goverde,Prasun Kumar,(unknown),L Dornfeld,(unknown),Sandrine Georgeon,Sergey Ovchinnikov,Derek N. Woolfson,Bruno E. Correia,Sucharita Dey,Emmanuel D. Levy	56
4	Co-evolution-based prediction of metal-binding sites in proteomes by machine learning 2023 ·Nature Chemical Biology ·Yao Cheng,Haobo Wang,Hua Xu,Yuan Liu,Bin Ma,Xuemin Chen,(unknown),(unknown),Bo Wang,Carina Shiau,Sergey Ovchinnikov,Xiao‐Dong Su,Chu Wang	28
5	Computational design of constitutively active cGAS 2023 ·Nature Structural & Molecular Biology ·Quinton M. Dowling,Hannah E. Volkman,Elizabeth Gray,Sergey Ovchinnikov,Stephanie Cambier,Asim K. Bera,Banumathi Sankaran,Max Johnson,Matthew J. Bick,Alex Kang,Daniel B. Stetson,Neil P. King	11
6	De novo design of small beta barrel proteins 2023 ·Proceedings of the National Academy of Sciences ·David E. Kim,Davin R. Jensen,David Feldman,Doug Tischer,Ayesha Saleem,Cameron M. Chow,Xinting Li,Lauren Carter,Lukas F. Milles,Hannah Nguyen,Alex Kang,Asim K. Bera,Francis C. Peterson,Brian F. Volkman,Sergey Ovchinnikov,David Baker	21
7	End-to-end learning of multiple sequence alignments with differentiable Smith–Waterman 2022 ·Bioinformatics ·(unknown),Nicholas Bhattacharya,Roshan Rao,Justas Dauparas,Neil Thomas,(unknown),Alexander M. Rush,Peter K. Koo,Sergey Ovchinnikov	21
8	Interpreting Potts and Transformer Protein Models Through the Lens of Simplified Attention 2021 ·PubMed ·Nicholas Bhattacharya,Neil Thomas,Roshan Rao,Justas Dauparas,Peter K. Koo,David Baker,Yun S. Song,Sergey Ovchinnikov	15
9	De novo protein design by deep network hallucinationbreakdown → 2021 ·Nature ·Ivan Anishchenko,Samuel J. Pellock,Tamuka M. Chidyausiku,Theresa A. Ramelot,Sergey Ovchinnikov,Jingzhou Hao,Khushboo Bafna,Christoffer Norn,Alex Kang,Asim K. Bera,Frank DiMaio,Lauren Carter,Cameron M. Chow,G.T. Montelione,David Baker	334
10	Improved protein structure prediction using predicted interresidue orientationsbreakdown → 2020 ·Proceedings of the National Academy of Sciences ·Jianyi Yang,Ivan Anishchenko,Hahnbeom Park,Zhenling Peng,Sergey Ovchinnikov,David Baker	925
11	Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields 2020 ·Molecular Cell ·(unknown),Assaf Amitai,Jason D. Buenrostro,Aditi Chakrabarti,Lingluo Chu,Anders S. Hansen,Kristen M. Koenig,Ajay S. Labade,Sirui Liu,Tadasu Nozaki,Sergey Ovchinnikov,Andrew Seeber,Haitham A. Shaban,Jan-Hendrik Spille,Andrew D. Stephens,Jun-Han Su,Dushan N. Wadduwage	38
12	Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex 2020 ·Science ·Xudong Wu,Marc Siggel,Sergey Ovchinnikov,Wei Mi,Vladimir Svetlov,Evgeny Nudler,Maofu Liao,Gerhard Hummer,Tom A. Rapoport	158
13	Protein interaction networks revealed by proteome coevolutionbreakdown → 2019 ·Science ·Qian Cong,Ivan Anishchenko,Sergey Ovchinnikov,David Baker	150
14	Protein homology model refinement by large-scale energy optimization 2018 ·Proceedings of the National Academy of Sciences ·Hahnbeom Park,Sergey Ovchinnikov,David E. Kim,Frank DiMaio,David Baker	47
15	Structurally Mapping Endogenous Heme in the CcmCDE Membrane Complex for Cytochrome c Biogenesis 2018 ·Journal of Molecular Biology ·Molly C. Sutherland,(unknown),Sergey Ovchinnikov,David Baker,Robert G. Kranz	18
16	Protein structure determination using metagenome sequence databreakdown → 2017 ·Science ·Sergey Ovchinnikov,Hahnbeom Park,Neha Varghese,Po‐Ssu Huang,Georgios A. Pavlopoulos,David E. Kim,Hetunandan Kamisetty,Nikos C. Kyrpides,David Baker	350
17	Origins of coevolution between residues distant in protein 3D structures 2017 ·Proceedings of the National Academy of Sciences ·Ivan Anishchenko,Sergey Ovchinnikov,Hetunandan Kamisetty,David Baker	132
18	Structure prediction using sparse simulated NOE restraints with Rosetta in CASP 11 2016 ·Proteins Structure Function and Bioinformatics ·Sergey Ovchinnikov,Hahnbeom Park,David E. Kim,Yuan Liu,Ray Yu‐Ruei Wang,David Baker	15
19	Improved de novo structure prediction in CASP 11 by incorporating coevolution information into Rosetta 2015 ·Proteins Structure Function and Bioinformatics ·Sergey Ovchinnikov,David E. Kim,Ray Yu‐Ruei Wang,Yuan Liu,Frank DiMaio,David Baker	77
20	Assessing the utility of coevolution-based residue–residue contact predictions in a sequence- and structure-rich erabreakdown → 2013 ·Proceedings of the National Academy of Sciences ·Hetunandan Kamisetty,Sergey Ovchinnikov,David Baker	490

About Sergey Ovchinnikov

Sergey Ovchinnikov is a scholar working on Molecular Biology, Materials Chemistry and Genetics, having authored 71 papers that have together received 10.6k indexed citations. Recurring topics across this work include Protein Structure and Dynamics (41 papers), RNA and protein synthesis mechanisms (26 papers) and Enzyme Structure and Function (18 papers). The work is most often cited by research in Molecular Biology (7.9k citations), Structural Biology (111 citations) and Cell Biology (911 citations). Sergey Ovchinnikov has collaborated with scholars based in United States, China and Israel. Frequent co-authors include Milot Mirdita, Yoshitaka Moriwaki, Martin Steinegger, Konstantin Schütze, Lim Heo, David Baker, Hetunandan Kamisetty, Hahnbeom Park, Ivan Anishchenko and Jianyi Yang. Their work appears in journals such as Nature, Science and Cell.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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