Gemma L. Holliday

5.4k citations

36 papers · 2.9k indexed · 1 hit paper · h-index 26

Molecular Biology top 5%
Materials Chemistry top 10%
Computational Theory and Mathematics top 2%
Nutrition and Dietetics top 5%
Renewable Energy, Sustainability and the Environment top 10%

Co-authors: Janet M. Thornton Claudia Andreini Ivano Bertini Gabriele Cavallaro John B. O. Mitchell Nicholas Furnham Syed Asad Rahman Daniel E. Almonacid
Topics: Microbial Metabolic Engineering and Bioproduction (15 papers)Protein Structure and Dynamics (10 papers)Enzyme Structure and Function (9 papers)
Cited by: Molecular Biology Computational Theory and Mathematics Nutrition and Dietetics
Journals: Nucleic Acids Research Journal of Biological Chemistry Bioinformatics
Partner nations: United Kingdom United States Italy

In The Last Decade

Gemma L. Holliday

35 papers receiving 2.8k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Metal ions in biological catalysis: from enzyme databases to general principles

2008 903 citations Claudia Andreini, Ivano Bertini et al. JBIC Journal of Biological Inorganic Chemistry profile →

Peers

Countries citing papers authored by Gemma L. Holliday

Since Specialization

Citations

This map shows the geographic impact of Gemma L. Holliday's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Gemma L. Holliday with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Gemma L. Holliday more than expected).

Fields of papers citing papers by Gemma L. Holliday

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Gemma L. Holliday. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Gemma L. Holliday. The network helps show where Gemma L. Holliday may publish in the future.

Co-authorship network of co-authors of Gemma L. Holliday

This figure shows the co-authorship network connecting the top 25 collaborators of Gemma L. Holliday. A scholar is included among the top collaborators of Gemma L. Holliday based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Gemma L. Holliday. Gemma L. Holliday is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Analyzing sex imbalance in EGA and dbGaP biological databases: Recommendations for better practices 2024 ·iScience ·Victoria Ruiz‐Serra,Nataly Buslón,(unknown),(unknown),M. P. Morales,(unknown),(unknown),Gemma L. Holliday,Aina Jené,Mauricio Moldes,Jordi Rambla,Alfonso Valencia,María José Rementeria,(unknown),Davide Cirillo	0
2	A global analysis of function and conservation of catalytic residues in enzymes 2019 ·Journal of Biological Chemistry ·António J. M. Ribeiro,Jonathan D. Tyzack,Neera Borkakoti,Gemma L. Holliday,Janet M. Thornton	88
3	Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a “Plug and Play” Domain 2018 ·Methods in enzymology on CD-ROM/Methods in enzymology ·Gemma L. Holliday,Eyal Akiva,Elaine C. Meng,Shoshana Brown,Sara Calhoun,Ursula Pieper,Andrej Săli,Squire J. Booker,Patricia C. Babbitt	97
4	A global view of structure–function relationships in the tautomerase superfamily 2017 ·Journal of Biological Chemistry ·Rebecca M. Davidson,Bert‐Jan Baas,Eyal Akiva,Gemma L. Holliday,Benjamin J. Polacco,Jake A. LeVieux,(unknown),Yan Zhang,Christian P. Whitman,Patricia C. Babbitt	44
5	Evaluating Functional Annotations of Enzymes Using the Gene Ontology 2016 ·Methods in molecular biology ·Gemma L. Holliday,Rebecca M. Davidson,Eyal Akiva,Patricia C. Babbitt	14
6	The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations 2015 ·Database ·Frederic Bastian,Marcus C. Chibucos,Pascale Gaudet,Michelle Giglio,Gemma L. Holliday,Hongzhan Huang,Suzanna Lewis,Anne Niknejad,Sandra Orchard,Sylvain Poux,Nives Škunca,Marc Robinson‐Rechavi	52
7	EC-BLAST: a tool to automatically search and compare enzyme reactions 2014 ·Nature Methods ·Syed Asad Rahman,Sergio Martínez Cuesta,Nicholas Furnham,Gemma L. Holliday,Janet M. Thornton	94
8	The Structure–Function Linkage Database 2013 ·Nucleic Acids Research ·Eyal Akiva,Shoshana Brown,Daniel E. Almonacid,Alan E. Barber,(unknown),Michael Hicks,Conrad C. Huang,(unknown),Susan T. Mashiyama,Elaine C. Meng,(unknown),John H. Morris,Sunil Ojha,Alexandra M. Schnoes,Doug Stryke,Jeffrey M. Yunes,Thomas E. Ferrin,Gemma L. Holliday,Patricia C. Babbitt	189
9	The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes 2013 ·Nucleic Acids Research ·Nicholas Furnham,Gemma L. Holliday,Tjaart de Beer,Julius O.B. Jacobsen,William R. Pearson,Janet M. Thornton	137
10	Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies 2012 ·PLoS Computational Biology ·Nicholas Furnham,Ian Sillitoe,Gemma L. Holliday,Alison Cuff,Roman A. Laskowski,Christine Orengo,Janet M. Thornton	73
11	FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies 2011 ·Nucleic Acids Research ·Nicholas Furnham,Ian Sillitoe,Gemma L. Holliday,Alison Cuff,Syed Asad Rahman,Roman A. Laskowski,Christine Orengo,Janet M. Thornton	35
12	Characterizing the complexity of enzymes on the basis of their mechanisms and structures with a bio‐computational analysis 2011 ·FEBS Journal ·Gemma L. Holliday,(unknown),John B. O. Mitchell,Janet M. Thornton	24
13	The Structures and Physicochemical Properties of Organic Cofactors in Biocatalysis 2010 ·Journal of Molecular Biology ·(unknown),Gemma L. Holliday,Syed Asad Rahman,Janet M. Thornton	58
14	Small Molecule Subgraph Detector (SMSD) toolkit 2009 ·Journal of Cheminformatics ·Syed Asad Rahman,Matthew Bashton,Gemma L. Holliday,Rainer Schräder,Janet M. Thornton	96
15	Understanding the Functional Roles of Amino Acid Residues in Enzyme Catalysis 2009 ·Journal of Molecular Biology ·Gemma L. Holliday,John B. O. Mitchell,Janet M. Thornton	133
16	Metal ions in biological catalysis: from enzyme databases to general principlesbreakdown → 2008 ·JBIC Journal of Biological Inorganic Chemistry ·Claudia Andreini,Ivano Bertini,Gabriele Cavallaro,Gemma L. Holliday,Janet M. Thornton	903
17	Evolution of enzymes and pathways for the biosynthesis of cofactors 2007 ·Natural Product Reports ·Gemma L. Holliday,Janet M. Thornton,Andrée Marquet,Alison G. Smith,Fabrice Rébeillé,Ralf R. Mendel,Heidi Schubert,Andrew D. Lawrence,Martin J. Warren	51
18	The Chemistry of Protein Catalysis 2007 ·Journal of Molecular Biology ·Gemma L. Holliday,Daniel E. Almonacid,John B. O. Mitchell,Janet M. Thornton	38
19	The Geometry of Interactions between Catalytic Residues and their Substrates 2007 ·Journal of Molecular Biology ·James Torrance,Gemma L. Holliday,John B. O. Mitchell,Janet M. Thornton	13
20	MACiE: a database of enzyme reaction mechanisms 2005 ·Bioinformatics ·Gemma L. Holliday,Gail J. Bartlett,Daniel E. Almonacid,Noel M. O’Boyle,Peter Murray‐Rust,Janet M. Thornton,John B. O. Mitchell	39

About Gemma L. Holliday

Gemma L. Holliday is a scholar working on Inorganic Chemistry, Molecular Biology and Computational Theory and Mathematics, having authored 36 papers that have together received 2.9k indexed citations. Recurring topics across this work include Microbial Metabolic Engineering and Bioproduction (15 papers), Protein Structure and Dynamics (10 papers) and Enzyme Structure and Function (9 papers). The work is most often cited by research in Molecular Biology (1.9k citations), Computational Theory and Mathematics (291 citations) and Nutrition and Dietetics (273 citations). Gemma L. Holliday has collaborated with scholars based in United Kingdom, United States and Italy. Frequent co-authors include Janet M. Thornton, Claudia Andreini, Ivano Bertini, Gabriele Cavallaro, John B. O. Mitchell, Nicholas Furnham, Syed Asad Rahman, Daniel E. Almonacid, Jonathan D. Tyzack and António J. M. Ribeiro. Their work appears in journals such as Nucleic Acids Research, Journal of Biological Chemistry and Bioinformatics.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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