Daniel E. Almonacid

1.3k citations

26 papers · 928 indexed · h-index 15

Co-authors: Gemma L. Holliday Patricia C. Babbitt John B. O. Mitchell Janet M. Thornton Noel M. O’Boyle Laurens Kraal Zachary S. Apte Elisabeth M. Bik
Topics: Protein Structure and Dynamics (7 papers)Microbial Metabolic Engineering and Bioproduction (7 papers)Gut microbiota and health (6 papers)
Cited by: Molecular Biology Renewable Energy, Sustainability and the Environment Computational Theory and Mathematics
Journals: Proceedings of the National Academy of Sciences Nucleic Acids Research Bioinformatics
Partner nations: United States Chile United Kingdom

In The Last Decade

Daniel E. Almonacid

26 papers receiving 914 citations

Peers

Countries citing papers authored by Daniel E. Almonacid

Since Specialization

Citations

This map shows the geographic impact of Daniel E. Almonacid's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Daniel E. Almonacid with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Daniel E. Almonacid more than expected).

Fields of papers citing papers by Daniel E. Almonacid

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Daniel E. Almonacid. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Daniel E. Almonacid. The network helps show where Daniel E. Almonacid may publish in the future.

Co-authorship network of co-authors of Daniel E. Almonacid

This figure shows the co-authorship network connecting the top 25 collaborators of Daniel E. Almonacid. A scholar is included among the top collaborators of Daniel E. Almonacid based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Daniel E. Almonacid. Daniel E. Almonacid is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Longitudinal gut microbial signals are associated with weight loss: insights from a digital therapeutics program 2024 ·Frontiers in Nutrition ·Shreyas V. Kumbhare,Inti Pedroso,(unknown),(unknown),(unknown),(unknown),Gursimran Kochhar,Parambir S. Dulai,Ranjan Sinha,Daniel E. Almonacid	2
2	Local Network Properties of Soil and Rhizosphere Microbial Communities in Potato Plantations Treated with a Biological Product Are Important Predictors of Crop Yield 2021 ·mSphere ·(unknown),Ignacio Belda,Beatriz García-Jiménez,Adrian J. Duehl,James R. Doroghazi,Daniel E. Almonacid,Varghese P. Thomas,Alberto Acedo	14
3	Gut microbiome composition and risk factors in a large cross-sectional IBS cohort 2020 ·BMJ Open Gastroenterology ·Melissa Agnello,Lauren Carroll,(unknown),(unknown),Christina G.S. Palmer,(unknown),Claire Greene,(unknown),(unknown),Daniel E. Almonacid,Michael C. Hoaglin	23
4	The role of a sequencing-based clinical intestinal screening test in patients at high-risk for Clostridium difficile and other pathogens: a case report 2019 ·Journal of Medical Case Reports ·(unknown),(unknown),(unknown),Elisabeth M. Bik,Christina G.S. Palmer,Michael C. Hoaglin,Daniel E. Almonacid,(unknown),Zachary S. Apte	1
5	Self-Sampling for Human Papillomavirus Testing: Increased Cervical Cancer Screening Participation and Incorporation in International Screening Programs 2018 ·Frontiers in Public Health ·(unknown),Christina G.S. Palmer,Elisabeth M. Bik,Juan Pablo Cárdenas,Harold Núñez,Laurens Kraal,Sara W. Bird,(unknown),Alison Smith,(unknown),Audrey D. Goddard,Daniel E. Almonacid,Susan Mahler Zneimer,(unknown),Zachary S. Apte	102
6	Novel Insights for Inhibiting Mutant Heterodimer IDH1wt-R132H in Cancer: An In-Silico Approach 2018 ·Molecular Diagnosis & Therapy ·(unknown),(unknown),Daniel E. Almonacid,Fernando D. González‐Nilo	4
7	Increasing the intracellular isoprenoid pool in Saccharomyces cerevisiae by structural fine-tuning of a bifunctional farnesyl diphosphate synthase 2017 ·FEMS Yeast Research ·(unknown),(unknown),Romina V. Sepúlveda,Daniel E. Almonacid,Fernando D. González‐Nilo,Eduardo Agosín	11
8	16S rRNA gene sequencing and healthy reference ranges for 28 clinically relevant microbial taxa from the human gut microbiome 2017 ·PLoS ONE ·Daniel E. Almonacid,Laurens Kraal,Francisco J. Ossandon,Yelena V. Budovskaya,Juan Pablo Cárdenas,Elisabeth M. Bik,Audrey D. Goddard,(unknown),Zachary S. Apte	75
9	Biomimetics: From Bioinformatics to Rational Design of Dendrimers as Gene Carriers 2015 ·PLoS ONE ·Valeria Márquez‐Miranda,María Belén Camarada,(unknown),(unknown),Daniel E. Almonacid,Fernando D. González‐Nilo	14
10	Participation of the Salmonella OmpD Porin in the Infection of RAW264.7 Macrophages and BALB/c Mice 2014 ·PLoS ONE ·(unknown),Bernardo Collao,(unknown),Vı́ctor H. Bustamante,(unknown),(unknown),Daniel E. Almonacid,Daniel Aguayo,Iván L. Calderón,Fernando Gil,Carlos A. Santiviago,Eduardo H. Morales,Edmundo Calva,Claudia P. Saavedra	19
11	The Structure–Function Linkage Database 2013 ·Nucleic Acids Research ·Eyal Akiva,Shoshana Brown,Daniel E. Almonacid,Alan E. Barber,(unknown),Michael Hicks,Conrad C. Huang,(unknown),Susan T. Mashiyama,Elaine C. Meng,(unknown),John H. Morris,Sunil Ojha,Alexandra M. Schnoes,Doug Stryke,Jeffrey M. Yunes,Thomas E. Ferrin,Gemma L. Holliday,Patricia C. Babbitt	189
12	Prediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily 2013 ·Proceedings of the National Academy of Sciences ·Frank Wallrapp,(unknown),(unknown),Daniel E. Almonacid,B. Hillerich,R.D. Seidel,Y. Patskovsky,Patricia C. Babbitt,Steven C. Almo,Matthew P. Jacobson,C. Dale Poulter	63
13	Toward mechanistic classification of enzyme functions 2011 ·Current Opinion in Chemical Biology ·Daniel E. Almonacid,Patricia C. Babbitt	35
14	Quantitative Comparison of Catalytic Mechanisms and Overall Reactions in Convergently Evolved Enzymes: Implications for Classification of Enzyme Function 2010 ·PLoS Computational Biology ·Daniel E. Almonacid,(unknown),John B. O. Mitchell,Patricia C. Babbitt	33
15	A semiempirical approach to the intra‐phycocyanin and inter‐phycocyanin fluorescence resonance energy‐transfer pathways in phycobilisomes 2007 ·Journal of Computational Chemistry ·(unknown),Daniel E. Almonacid,Maximiliano Figueroa,José Martínez‐Oyanedel,Marta Bunster	14
16	The Chemistry of Protein Catalysis 2007 ·Journal of Molecular Biology ·Gemma L. Holliday,Daniel E. Almonacid,John B. O. Mitchell,Janet M. Thornton	38
17	Using Reaction Mechanism to Measure Enzyme Similarity 2007 ·Journal of Molecular Biology ·Noel M. O’Boyle,Gemma L. Holliday,Daniel E. Almonacid,John B. O. Mitchell	34
18	The structure at 2 Å resolution of Phycocyanin from Gracilaria chilensis and the energy transfer network in a PC–PC complex 2006 ·Biophysical Chemistry ·Carlos Contreras‐Martel,(unknown),Carola Bruna,(unknown),Daniel E. Almonacid,Maximiliano Figueroa,José Martínez‐Oyanedel,Marta Bunster	36
19	MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms 2006 ·Nucleic Acids Research ·Gemma L. Holliday,Daniel E. Almonacid,Gail J. Bartlett,Noel M. O’Boyle,James Torrance,Peter Murray‐Rust,John B. O. Mitchell,Janet M. Thornton	57
20	MACiE: a database of enzyme reaction mechanisms 2005 ·Bioinformatics ·Gemma L. Holliday,Gail J. Bartlett,Daniel E. Almonacid,Noel M. O’Boyle,Peter Murray‐Rust,Janet M. Thornton,John B. O. Mitchell	39

About Daniel E. Almonacid

Daniel E. Almonacid is a scholar working on Gastroenterology, Biological Psychiatry and Biochemistry, having authored 26 papers that have together received 928 indexed citations. Recurring topics across this work include Protein Structure and Dynamics (7 papers), Microbial Metabolic Engineering and Bioproduction (7 papers) and Gut microbiota and health (6 papers). The work is most often cited by research in Molecular Biology (649 citations), Renewable Energy, Sustainability and the Environment (88 citations) and Computational Theory and Mathematics (79 citations). Daniel E. Almonacid has collaborated with scholars based in United States, Chile and United Kingdom. Frequent co-authors include Gemma L. Holliday, Patricia C. Babbitt, John B. O. Mitchell, Janet M. Thornton, Noel M. O’Boyle, Laurens Kraal, Zachary S. Apte, Elisabeth M. Bik, Audrey D. Goddard and Juan Pablo Cárdenas. Their work appears in journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Bioinformatics.

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