Pascale Gaudet

31.0k total citations · 1 hit paper
69 papers, 3.2k citations indexed

About

Pascale Gaudet is a scholar working on Molecular Biology, Cell Biology and Biophysics. According to data from OpenAlex, Pascale Gaudet has authored 69 papers receiving a total of 3.2k indexed citations (citations by other indexed papers that have themselves been cited), including 64 papers in Molecular Biology, 14 papers in Cell Biology and 8 papers in Biophysics. Recurrent topics in Pascale Gaudet's work include Bioinformatics and Genomic Networks (31 papers), Biomedical Text Mining and Ontologies (30 papers) and Genomics and Phylogenetic Studies (14 papers). Pascale Gaudet is often cited by papers focused on Bioinformatics and Genomic Networks (31 papers), Biomedical Text Mining and Ontologies (30 papers) and Genomics and Phylogenetic Studies (14 papers). Pascale Gaudet collaborates with scholars based in Switzerland, United States and United Kingdom. Pascale Gaudet's co-authors include Suzanna Lewis, Paul D. Thomas, Michael Livstone, Petra Fey, Rex L. Chisholm, Huaiyu Mi, Anushya Muruganujan, Qing Dong, Karen E Pilcher and Amos Bairoch and has published in prestigious journals such as Nucleic Acids Research, Journal of Biological Chemistry and Nature Genetics.

In The Last Decade

Pascale Gaudet

67 papers receiving 3.1k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

2011 637 citations Pascale Gaudet, Suzanna Lewis et al. profile →

Peers

Pascale Gaudet

GENET

SPECT

Noemí del‐Toro United Kingdom

Gerhard Mayer Germany

Antonio Fabregat United Kingdom

Sheenah M. Mische United States

David García‐Seisdedos Spain

Jingwen Bai China

Joseph Foster United States

Shengbo Wang United Kingdom

Chakradhar Bandla United Kingdom

Selvakumar Kamatchinathan United Kingdom

Noemí del‐Toro United Kingdom

Pascale Gaudet

2.5k ×1.1

309 ×0.8

GENET

641 ×1.8

SPECT

327 ×0.9

209 ×1.0

Citations per year, relative to Pascale Gaudet Pascale Gaudet (= 1×) peers Noemí del‐Toro

Countries citing papers authored by Pascale Gaudet

Since Specialization

Citations

This map shows the geographic impact of Pascale Gaudet's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Pascale Gaudet with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Pascale Gaudet more than expected).

Fields of papers citing papers by Pascale Gaudet

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Pascale Gaudet. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Pascale Gaudet. The network helps show where Pascale Gaudet may publish in the future.

Co-authorship network of co-authors of Pascale Gaudet

This figure shows the co-authorship network connecting the top 25 collaborators of Pascale Gaudet. A scholar is included among the top collaborators of Pascale Gaudet based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Pascale Gaudet. Pascale Gaudet is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Gaudet, Pascale, et al.. (2025). New and revised gene ontology biological process terms describe multiorganism interactions critical for understanding microbial pathogenesis and sequences of concern. Journal of Biomedical Semantics. 16(1). 4–4. 1 indexed citations

Wood, Valerie, Seth Carbon, Midori A. Harris, et al.. (2020). Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns. Open Biology. 10(9). 200149–200149. 6 indexed citations

Fernández‐Breis, Jesualdo Tomás, Pascale Gaudet, Martin Kuiper, et al.. (2019). An Example of Multimodal Biological Knowledge Representation.. 1 indexed citations

Thomas, Paul D., David P. Hill, Huaiyu Mi, et al.. (2019). Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems. Nature Genetics. 51(10). 1429–1433. 67 indexed citations

Attrill, Helen, Pascale Gaudet, Rachael P. Huntley, et al.. (2019). Annotation of gene product function from high-throughput studies using the Gene Ontology. Database. 2019. 20 indexed citations

Huang, Liang‐Chin, Karen Ross, Timothy R. Baffi, et al.. (2018). Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources. Scientific Reports. 8(1). 23 indexed citations

Cusin, Isabelle, Daniel Teixeira, Monique Zahn‐Zabal, et al.. (2018). A new bioinformatics tool to help assess the significance of BRCA1 variants. Human Genomics. 12(1). 36–36. 8 indexed citations

Gaudet, Pascale & Christophe Dessimoz. (2016). Gene Ontology: Pitfalls, Biases, and Remedies. Methods in molecular biology. 1446. 189–205. 107 indexed citations

Feuermann, Marc, Pascale Gaudet, Huaiyu Mi, Suzanna Lewis, & Paul D. Thomas. (2016). Large-scale inference of gene function through phylogenetic annotation of Gene Ontology terms: case study of the apoptosis and autophagy cellular processes. Database. 2016. baw155–baw155. 12 indexed citations

10.

Bongcam‐Rudloff, Erik, Michelle D. Brazas, Manuel Corpas, et al.. (2015). GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training. PLoS Computational Biology. 11(4). e1004143–e1004143. 35 indexed citations

11.

Burge, Sarah, Teresa K. Attwood, Alex Bateman, et al.. (2012). Biocurators and Biocuration: surveying the 21st century challenges. Database. 2012(0). bar059–bar059. 49 indexed citations

12.

Lane, Lydie, Ghislaine Argoud‐Puy, Aurore Britan, et al.. (2011). neXtProt: a knowledge platform for human proteins. Nucleic Acids Research. 40(D1). D76–D83. 134 indexed citations

13.

Gaudet, Pascale, Petra Fey, Siddhartha Basu, et al.. (2010). dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa. Nucleic Acids Research. 39(Database). D620–D624. 33 indexed citations

14.

Gaudet, Pascale. (2009). The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species. PLoS Computational Biology. 5(7). e1000431–e1000431. 126 indexed citations

15.

Mi, Huaiyu, Qing Dong, Anushya Muruganujan, et al.. (2009). PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium. Nucleic Acids Research. 38(suppl_1). D204–D210. 461 indexed citations

16.

Gaudet, Pascale, Karen E Pilcher, Petra Fey, & Rex L. Chisholm. (2007). Transformation of Dictyostelium discoideum with plasmid DNA. Nature Protocols. 2(6). 1317–1324. 94 indexed citations

17.

Satre, Michel, Laurence Aubry, Pascale Gaudet, et al.. (2007). Mitochondrial carrier family: Repertoire and peculiarities of the cellular slime mould Dictyostelium discoideum. Biochimie. 89(9). 1058–1069. 27 indexed citations

18.

Storms, Reginald, Pascale Gaudet, Xiang Jia Min, et al.. (2006). Generation, annotation, and analysis of an extensive Aspergillus niger EST collection. BMC Microbiology. 6(1). 7–7. 33 indexed citations

19.

Fey, Petra, Pascale Gaudet, Karen E Pilcher, Jakob Franke, & Rex L. Chisholm. (2006). dictyBase and the Dicty Stock Center. Humana Press eBooks. 346. 51–74. 17 indexed citations

20.

Bonfils, Claire, Pascale Gaudet, & Adrian Tsang. (1999). Identification of cis-Regulating Elements andtrans-Acting Factors Regulating the Expression of the Gene Encoding the Small Subunit of Ribonucleotide Reductase inDictyostelium discoideum. Journal of Biological Chemistry. 274(29). 20384–20390. 8 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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