D.A. Keedy

22.4k total citations · 3 hit papers
46 papers, 16.0k citations indexed

About

D.A. Keedy is a scholar working on Molecular Biology, Materials Chemistry and Polymers and Plastics. According to data from OpenAlex, D.A. Keedy has authored 46 papers receiving a total of 16.0k indexed citations (citations by other indexed papers that have themselves been cited), including 33 papers in Molecular Biology, 25 papers in Materials Chemistry and 7 papers in Polymers and Plastics. Recurrent topics in D.A. Keedy's work include Enzyme Structure and Function (23 papers), Protein Structure and Dynamics (21 papers) and Protein Tyrosine Phosphatases (10 papers). D.A. Keedy is often cited by papers focused on Enzyme Structure and Function (23 papers), Protein Structure and Dynamics (21 papers) and Protein Tyrosine Phosphatases (10 papers). D.A. Keedy collaborates with scholars based in United States, United Kingdom and Canada. D.A. Keedy's co-authors include Jane S. Richardson, David Richardson, Jeffrey J. Headd, W.B. Arendall, Vincent B. Chen, Gary J. Kapral, Robert M. Immormino, Laura W. Murray, Christopher J. Williams and Steven M. Lewis and has published in prestigious journals such as The Journal of Chemical Physics, Bioinformatics and Journal of Applied Physics.

In The Last Decade

D.A. Keedy

46 papers receiving 15.9k citations

Hit Papers

align trajectories sort by overperformance

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

MolProbity: all-atom structure validation for macromolecular crystallography

2009 11.4k citations Vincent B. Chen, W.B. Arendall et al. Acta Crystallographica Section D Biological Crystallography profile →
MolProbity: More and better reference data for improved all‐atom structure validation

2017 2.8k citations Christopher J. Williams, Jeffrey J. Headd et al. Protein Science profile →
Alternate States of Proteins Revealed by Detailed Energy Landscape Mapping

2010 275 citations D.A. Keedy, David Richardson et al. profile →

Author Peers

Peers are selected by citation overlap in the author's most active subfields. citations · hero ref

Author						Papers	Cites
D.A. Keedy	11.3k	3.2k	1.6k	1.3k	1.2k	46	16.0k
Eugene Krissinel	10.7k 0.9×	4.1k 1.3×	1.6k 1.0×	1.1k 0.9×	1.1k 1.0×	28	15.0k
Harold R. Powell	9.2k 0.8×	3.9k 1.2×	1.4k 0.9×	1.0k 0.8×	991 0.8×	73	14.2k
Elizabeth Potterton	8.9k 0.8×	3.3k 1.0×	1.3k 0.8×	970 0.8×	989 0.8×	8	12.5k
Stuart McNicholas	9.6k 0.8×	3.6k 1.1×	1.4k 0.9×	973 0.8×	1.1k 0.9×	19	13.4k
Gert Vriend	15.3k 1.4×	3.7k 1.2×	1.8k 1.1×	919 0.7×	1.0k 0.9×	192	21.0k
Tom Alber	10.3k 0.9×	3.0k 0.9×	1.2k 0.8×	1.4k 1.1×	1.2k 1.1×	131	13.1k
Laura W. Murray	8.4k 0.7×	2.2k 0.7×	1.3k 0.8×	971 0.8×	934 0.8×	10	11.7k
Robert M. Immormino	9.2k 0.8×	2.3k 0.7×	1.3k 0.8×	992 0.8×	1.1k 0.9×	34	12.7k
Georg E. Schulz	15.3k 1.3×	4.4k 1.4×	2.2k 1.4×	905 0.7×	1.1k 1.0×	242	20.9k
Morten Kjeldgaard	12.1k 1.1×	3.7k 1.1×	2.1k 1.3×	736 0.6×	1.5k 1.3×	32	15.5k

Countries citing papers authored by D.A. Keedy

Since Specialization

Citations

This map shows the geographic impact of D.A. Keedy's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by D.A. Keedy with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites D.A. Keedy more than expected).

Fields of papers citing papers by D.A. Keedy

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by D.A. Keedy. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by D.A. Keedy. The network helps show where D.A. Keedy may publish in the future.

Co-authorship network of co-authors of D.A. Keedy

This figure shows the co-authorship network connecting the top 25 collaborators of D.A. Keedy. A scholar is included among the top collaborators of D.A. Keedy based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with D.A. Keedy. D.A. Keedy is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Case, David A., Julian C.‐H. Chen, Lillian T. Chong, et al.. (2025). Structure-Based Experimental Datasets for Benchmarking Protein Simulation Force Fields [Article v1.0]. PubMed. 6(1). 3871–3871. 1 indexed citations

Aleshin, Alexander E., Lester J. Lambert, Ranajit Das, et al.. (2025). Fragment Screening Identifies Novel Allosteric Binders and Binding Sites in the VHR (DUSP3) Phosphatase. ACS Omega. 10(5). 4912–4926. 4 indexed citations

Ebrahim, Ali, et al.. (2025). Three STEPs Forward: A Trio of Unexpected Structures of PTPN5. Proteins Structure Function and Bioinformatics. 93(12). 2112–2127. 1 indexed citations

Vlimmeren, Anne E. van, et al.. (2024). Allosteric regulation of the tyrosine phosphatase PTP1B by a protein–protein interaction. Protein Science. 34(1). e70016–e70016. 4 indexed citations

Wankowicz, Stephanie A., et al.. (2024). Automated multiconformer model building for X-ray crystallography and cryo-EM. eLife. 12. 5 indexed citations

Ebrahim, Ali, et al.. (2024). Pushed to extremes: distinct effects of high temperature versus pressure on the structure of STEP. Communications Biology. 7(1). 59–59. 10 indexed citations

Boivin, Benoît, et al.. (2023). High-resolution double vision of the allosteric phosphatase PTP1B. Acta Crystallographica Section F Structural Biology Communications. 80(1). 1–12. 1 indexed citations

Biel, J.T., Louise Dunnett, Neil G. Paterson, et al.. (2023). Room-temperature crystallography reveals altered binding of small-molecule fragments to PTP1B. eLife. 12. 37 indexed citations

Wankowicz, Stephanie A., et al.. (2023). Automated multiconformer model building for X-ray crystallography and cryo-EM. eLife. 12. 13 indexed citations

10.

Ebrahim, Ali, et al.. (2022). Room-temperature serial synchrotron crystallography of the human phosphatase PTP1B. Acta Crystallographica Section F Structural Biology Communications. 79(1). 23–30. 8 indexed citations

11.

Ebrahim, Ali, Blake T. Riley, D. Kumaran, et al.. (2022). The temperature-dependent conformational ensemble of SARS-CoV-2 main protease (M^pro). IUCrJ. 9(5). 682–694. 35 indexed citations

12.

Riley, Blake T., Stephanie A. Wankowicz, Gydo C. P. van Zundert, et al.. (2020). qFit 3: Protein and ligand multiconformer modeling for X‐ray crystallographic and single‐particle cryo‐EM density maps. Protein Science. 30(1). 270–285. 35 indexed citations

13.

Keedy, D.A., Z.B. Hill, J.T. Biel, et al.. (2018). An expanded allosteric network in PTP1B by multitemperature crystallography, fragment screening, and covalent tethering. eLife. 7. 117 indexed citations

14.

Zundert, Gydo C. P. van, Brandi M. Hudson, D.A. Keedy, et al.. (2018). qFit-ligand Reveals Widespread Conformational Heterogeneity of Drug-Like Molecules in X-Ray Electron Density Maps. Journal of Medicinal Chemistry. 61(24). 11183–11198. 43 indexed citations

15.

Williams, Christopher J., Jeffrey J. Headd, Nigel W. Moriarty, et al.. (2017). MolProbity: More and better reference data for improved all‐atom structure validation. Protein Science. 27(1). 293–315. 2815 indexed citations breakdown →

16.

Russi, Silvia, Ana González, Lukas Kenner, et al.. (2016). Conformational variation of proteins at room temperature is not dominated by radiation damage. Journal of Synchrotron Radiation. 24(1). 73–82. 47 indexed citations

17.

Gaínza, Pablo, Kyle E. Roberts, Ivelin S. Georgiev, et al.. (2013). osprey. Methods in enzymology on CD-ROM/Methods in enzymology. 523. 87–107. 86 indexed citations

18.

Chen, Vincent B., W.B. Arendall, Jeffrey J. Headd, et al.. (2009). MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallographica Section D Biological Crystallography. 66(1). 12–21. 11415 indexed citations breakdown →

19.

Georgiev, Ivelin S., D.A. Keedy, Jane S. Richardson, David Richardson, & Bruce R. Donald. (2008). Algorithm for backrub motions in protein design. Bioinformatics. 24(13). i196–i204. 65 indexed citations

20.

Keedy, D.A., et al.. (1960). THE USE OF AN INSTRON TESTING MACHINE FOR THE DETERMINATION OF STRESS AND STRAIN-OPTICAL COEFFICIENTS. Defense Technical Information Center (DTIC). 4 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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