Henry van den Bedem

4.9k total citations
50 papers, 1.9k citations indexed

About

Henry van den Bedem is a scholar working on Molecular Biology, Materials Chemistry and Computational Theory and Mathematics. According to data from OpenAlex, Henry van den Bedem has authored 50 papers receiving a total of 1.9k indexed citations (citations by other indexed papers that have themselves been cited), including 41 papers in Molecular Biology, 27 papers in Materials Chemistry and 8 papers in Computational Theory and Mathematics. Recurrent topics in Henry van den Bedem's work include Protein Structure and Dynamics (30 papers), Enzyme Structure and Function (24 papers) and Computational Drug Discovery Methods (8 papers). Henry van den Bedem is often cited by papers focused on Protein Structure and Dynamics (30 papers), Enzyme Structure and Function (24 papers) and Computational Drug Discovery Methods (8 papers). Henry van den Bedem collaborates with scholars based in United States, Germany and France. Henry van den Bedem's co-authors include James S. Fraser, Avi J. Samelson, Tom Alber, Nathaniel Echols, P. Therese Lang, James M. Holton, Ashley M. Deacon, Peter E. Wright, D.A. Keedy and Jean‐Claude Latombe and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Bioinformatics.

In The Last Decade

Henry van den Bedem

49 papers receiving 1.8k citations

Peers

Countries citing papers authored by Henry van den Bedem

Since Specialization

Citations

This map shows the geographic impact of Henry van den Bedem's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Henry van den Bedem with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Henry van den Bedem more than expected).

Fields of papers citing papers by Henry van den Bedem

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Henry van den Bedem. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Henry van den Bedem. The network helps show where Henry van den Bedem may publish in the future.

Co-authorship network of co-authors of Henry van den Bedem

This figure shows the co-authorship network connecting the top 25 collaborators of Henry van den Bedem. A scholar is included among the top collaborators of Henry van den Bedem based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Henry van den Bedem. Henry van den Bedem is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Expanding automated multiconformer ligand modeling to macrocycles and fragments 2025 ·eLife ·(unknown), Nathaniel Echols, G.J. Correy, (unknown), (unknown), Adam R. Renslo, Henry van den Bedem, James S. Fraser, Stephanie A. Wankowicz	2
2	NGT: Generative AI with Synthesizability Guarantees Discovers MC2R Inhibitors from a Tera-Scale Virtual Screen 2024 ·Journal of Medicinal Chemistry ·(unknown), (unknown), Victor Kenyon, Henry van den Bedem	2
3	Automated multiconformer model building for X-ray crystallography and cryo-EM 2024 ·eLife ·Stephanie A. Wankowicz, (unknown), (unknown), Blake T. Riley, (unknown), (unknown), (unknown), Henry van den Bedem, D.A. Keedy, James S. Fraser	5
4	Automated multiconformer model building for X-ray crystallography and cryo-EM 2023 ·eLife ·Stephanie A. Wankowicz, (unknown), (unknown), Blake T. Riley, (unknown), (unknown), (unknown), Henry van den Bedem, D.A. Keedy, James S. Fraser	13
5	Kinematic Vibrational Entropy Assessment and Analysis of SARS CoV-2 Main Protease 2022 ·Journal of Chemical Information and Modeling ·(unknown), Sigrid Leyendecker, Henry van den Bedem	2
6	AtomNet PoseRanker: Enriching Ligand Pose Quality for Dynamic Proteins in Virtual High-Throughput Screens 2022 ·Journal of Chemical Information and Modeling ·Kate A. Stafford, Brandon Anderson, Jon M. Sorenson, Henry van den Bedem	31
7	Reproducibility of protein x-ray diffuse scattering and potential utility for modeling atomic displacement parameters 2021 ·Structural Dynamics ·(unknown), Medhanjali Dasgupta, Frédéric Poitevin, Irimpan I. Mathews, Henry van den Bedem, Michael E. Wall, Chun Hong Yoon, Mark A. Wilson	2
8	qFit 3: Protein and ligand multiconformer modeling for X‐ray crystallographic and single‐particle cryo‐EM density maps 2020 ·Protein Science ·Blake T. Riley, Stephanie A. Wankowicz, (unknown), Gydo C. P. van Zundert, (unknown), James S. Fraser, D.A. Keedy, Henry van den Bedem	35
9	Transport Properties of Nanoporous, Chemically Forced Biological Lattices 2019 ·The Journal of Physical Chemistry B ·(unknown), Jonathan Herrmann, Soichi Wakatsuki, Henry van den Bedem	1
10	Shining light on cysteine modification: connecting protein conformational dynamics to catalysis and regulation 2019 ·Journal of Synchrotron Radiation ·Henry van den Bedem, Mark A. Wilson	14
11	Cryo-EM structures of Helicobacter pylori vacuolating cytotoxin A oligomeric assemblies at near-atomic resolution 2019 ·Proceedings of the National Academy of Sciences ·Kaiming Zhang, Huawei Zhang, Shanshan Li, Grigore Pintilie, Tung‐Chung Mou, Yuanzhu Gao, Qinfen Zhang, Henry van den Bedem, Michael F. Schmid, Shannon Wing Ngor Au, Wah Chiu	30
12	Kinematic Flexibility Analysis: Hydrogen Bonding Patterns Impart a Spatial Hierarchy of Protein Motion 2018 ·Journal of Chemical Information and Modeling ·(unknown), Sigrid Leyendecker, Henry van den Bedem	6
13	Nutrient transport suggests an evolutionary basis for charged archaeal surface layer proteins 2018 ·The ISME Journal ·(unknown), Jonathan Herrmann, Bradley B. Tolar, Frédéric Poitevin, (unknown), John Bargar, David A. Stahl, Grant J. Jensen, Christopher Francis, Soichi Wakatsuki, Henry van den Bedem	48
14	qFit-ligand Reveals Widespread Conformational Heterogeneity of Drug-Like Molecules in X-Ray Electron Density Maps 2018 ·Journal of Medicinal Chemistry ·Gydo C. P. van Zundert, Brandi M. Hudson, (unknown), D.A. Keedy, Rasmus Fonseca, Amélie Héliou, Pooja Suresh, Kenneth Borrelli, Tyler Day, James S. Fraser, Henry van den Bedem	43
15	Frustration-guided motion planning reveals conformational transitions in proteins 2017 ·Proteins Structure Function and Bioinformatics ·(unknown), Rasmus Fonseca, Sigrid Leyendecker, Henry van den Bedem	5
16	Conformational variation of proteins at room temperature is not dominated by radiation damage 2016 ·Journal of Synchrotron Radiation ·Silvia Russi, Ana González, Lukas Kenner, D.A. Keedy, James S. Fraser, Henry van den Bedem	47
17	Visualizing chaperone-assisted protein folding 2016 ·Nature Structural & Molecular Biology ·Scott Horowitz, Loïc Salmon, Philipp Koldewey, Logan S. Ahlstrom, Raoul Martin, Shu Quan, Pavel V. Afonine, Henry van den Bedem, Lili Wang, Qingping Xu, Raymond C. Trievel, Charles L. Brooks, James C.A. Bardwell	43
18	Geometric analysis characterizes molecular rigidity in generic and non-generic protein configurations 2015 ·Journal of the Mechanics and Physics of Solids ·(unknown), Sigrid Leyendecker, Henry van den Bedem	11
19	Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR 2014 ·Proceedings of the National Academy of Sciences ·R. Bryn Fenwick, Henry van den Bedem, James S. Fraser, Peter E. Wright	126
20	Crystal Cryocooling Distorts Conformational Heterogeneity in a Model Michaelis Complex of DHFR 2014 ·Structure ·D.A. Keedy, Henry van den Bedem, David A. Sivak, Gregory A. Petsko, Dagmar Ringe, Mark A. Wilson, James S. Fraser	105

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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