Ryan Lilien

1.6k total citations
33 papers, 1.1k citations indexed

About

Ryan Lilien is a scholar working on Molecular Biology, Materials Chemistry and Computational Theory and Mathematics. According to data from OpenAlex, Ryan Lilien has authored 33 papers receiving a total of 1.1k indexed citations (citations by other indexed papers that have themselves been cited), including 24 papers in Molecular Biology, 9 papers in Materials Chemistry and 8 papers in Computational Theory and Mathematics. Recurrent topics in Ryan Lilien's work include Protein Structure and Dynamics (10 papers), Enzyme Structure and Function (9 papers) and Computational Drug Discovery Methods (8 papers). Ryan Lilien is often cited by papers focused on Protein Structure and Dynamics (10 papers), Enzyme Structure and Function (9 papers) and Computational Drug Discovery Methods (8 papers). Ryan Lilien collaborates with scholars based in United States, Canada and United Kingdom. Ryan Lilien's co-authors include Bruce R. Donald, Ivelin S. Georgiev, Amy C. Anderson, Izhar Wallach, Hany Farid, Abraham Heifets, Navdeep Jaitly, Clark F. Olson, D.P. Huttenlocher and Terry P. Lebold and has published in prestigious journals such as Nature, Journal of Biological Chemistry and SHILAP Revista de lepidopterología.

In The Last Decade

Ryan Lilien

33 papers receiving 1.1k citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Ryan Lilien United States 17 780 226 157 114 110 33 1.1k
Paul W. Finn United Kingdom 21 1.6k 2.0× 350 1.5× 120 0.8× 105 0.9× 221 2.0× 50 2.1k
David Diller United States 19 833 1.1× 634 2.8× 171 1.1× 104 0.9× 225 2.0× 66 1.5k
Moritz Hoffmann Switzerland 9 1.0k 1.3× 362 1.6× 291 1.9× 113 1.0× 68 0.6× 16 1.5k
Veerabahu Shanmugasundaram United States 19 766 1.0× 408 1.8× 142 0.9× 137 1.2× 137 1.2× 39 1.2k
Sudipto Mukherjee United States 17 1.3k 1.7× 722 3.2× 241 1.5× 76 0.7× 250 2.3× 27 1.9k
Lora Mak United Kingdom 5 829 1.1× 836 3.7× 222 1.4× 80 0.7× 135 1.2× 6 1.2k
John H. Van Drie United States 14 505 0.6× 550 2.4× 98 0.6× 97 0.9× 156 1.4× 21 847
Li Xiao United States 11 672 0.9× 175 0.8× 241 1.5× 59 0.5× 83 0.8× 26 1.0k
Christos A. Nicolaou United States 16 512 0.7× 660 2.9× 287 1.8× 96 0.8× 105 1.0× 30 941
Michael Krug Germany 15 552 0.7× 195 0.9× 248 1.6× 88 0.8× 146 1.3× 32 1.4k

Countries citing papers authored by Ryan Lilien

Since Specialization
Citations

This map shows the geographic impact of Ryan Lilien's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ryan Lilien with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ryan Lilien more than expected).

Fields of papers citing papers by Ryan Lilien

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ryan Lilien. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ryan Lilien. The network helps show where Ryan Lilien may publish in the future.

Co-authorship network of co-authors of Ryan Lilien

This figure shows the co-authorship network connecting the top 25 collaborators of Ryan Lilien. A scholar is included among the top collaborators of Ryan Lilien based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Ryan Lilien. Ryan Lilien is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Gallego, Gary M., J. C. Lee, Terry P. Lebold, et al.. (2015). Network-analysis-guided synthesis of weisaconitine D and liljestrandinine. Nature. 528(7583). 493–498. 124 indexed citations
2.
Gaínza, Pablo, Kyle E. Roberts, Ivelin S. Georgiev, et al.. (2013). osprey. Methods in enzymology on CD-ROM/Methods in enzymology. 523. 87–107. 86 indexed citations
3.
Lilien, Ryan, et al.. (2012). Efficient a Priori Identification of Drug Resistant Mutations Using Dead-End Elimination and MM-PBSA.. Journal of Chemical Information and Modeling. 52(6). 1529–1541. 10 indexed citations
4.
Heifets, Abraham & Ryan Lilien. (2010). LigAlign: Flexible ligand-based active site alignment and analysis. Journal of Molecular Graphics and Modelling. 29(1). 93–101. 42 indexed citations
5.
Wallach, Izhar, Navdeep Jaitly, & Ryan Lilien. (2010). A Structure-Based Approach for Mapping Adverse Drug Reactions to the Perturbation of Underlying Biological Pathways. PLoS ONE. 5(8). e12063–e12063. 44 indexed citations
6.
Lilien, Ryan, et al.. (2009). Restricted dead‐end elimination: Protein redesign with a bounded number of residue mutations. Journal of Computational Chemistry. 31(6). 1207–1215. 2 indexed citations
7.
Georgiev, Ivelin S., Ryan Lilien, & Bruce R. Donald. (2008). The minimized dead‐end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles. Journal of Computational Chemistry. 29(10). 1527–1542. 92 indexed citations
8.
Grembecka, Jolanta, Yunpeng Zhou, Yali Kong, et al.. (2007). Allosteric Inhibition of the Protein-Protein Interaction between the Leukemia-Associated Proteins Runx1 and CBFβ. Chemistry & Biology. 14(10). 1186–1197. 86 indexed citations
9.
Georgiev, Ivelin S., Ryan Lilien, & Bruce R. Donald. (2006). Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design. Bioinformatics. 22(14). e174–e183. 33 indexed citations
10.
Lilien, Ryan, et al.. (2006). Redesigning the PheA Domain of Gramicidin Synthetase Leads to a New Understanding of the Enzyme's Mechanism and Selectivity. Biochemistry. 45(51). 15495–15504. 53 indexed citations
11.
Mettu, Ramgopal R., Ryan Lilien, & Bruce R. Donald. (2005). High-throughput inference of protein-protein interfaces from unassigned NMR data. Computer applications in the biosciences. 21(Suppl 1). i292–i301. 1 indexed citations
12.
13.
Gillilan, Richard E. & Ryan Lilien. (2004). Optimization and dynamics of protein–protein complexes using B‐splines. Journal of Computational Chemistry. 25(13). 1630–1646. 7 indexed citations
14.
Langmead, Christopher J., et al.. (2004). A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated NMR Resonance Assignments. Journal of Computational Biology. 11(2-3). 277–298. 38 indexed citations
15.
Lilien, Ryan, Chris Bailey‐Kellogg, Amy C. Anderson, & Bruce R. Donald. (2004). A subgroup algorithm to identify cross-rotation peaks consistent with non-crystallographic symmetry. Acta Crystallographica Section D Biological Crystallography. 60(6). 1057–1067. 3 indexed citations
16.
O’Neil, Robert H., et al.. (2003). The Crystal Structure of Dihydrofolate Reductase‐Thymidylate Synthase from Cryptosporidium hominis Reveals a Novel Architecture for the Bifunctional Enzyme. Journal of Eukaryotic Microbiology. 50(s1). 555–556. 9 indexed citations
17.
Lilien, Lawrence D., Ryan Lilien, & Sebouh Setrakian. (2003). Hemopericardium and Cardiac Tamponade as Presenting Findings of Dexamethasone-Induced Hypertrophic Cardiomyopathy Complicated by Transmural Myocardial Infarction. Pediatric Cardiology. 24(3). 280–283. 3 indexed citations
18.
Lilien, Ryan, Hany Farid, & Bruce R. Donald. (2003). Probabilistic Disease Classification of Expression-Dependent Proteomic Data from Mass Spectrometry of Human Serum. Journal of Computational Biology. 10(6). 925–946. 108 indexed citations
19.
O’Neil, Robert H., Ryan Lilien, Bruce R. Donald, Robert M. Stroud, & Amy C. Anderson. (2003). Phylogenetic Classification of Protozoa Based on the Structure of the Linker Domain in the Bifunctional Enzyme, Dihydrofolate Reductase-Thymidylate Synthase. Journal of Biological Chemistry. 278(52). 52980–52987. 56 indexed citations
20.
Huttenlocher, D.P., Ryan Lilien, & Clark F. Olson. (1999). View-based recognition using an eigenspace approximation to the Hausdorff measure. IEEE Transactions on Pattern Analysis and Machine Intelligence. 21(9). 951–955. 48 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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