Jeffrey J. Headd

58.9k citations

20 papers · 39.1k indexed · 5 hit papers · h-index 17

Impact in

Structural Biology top 0.2%
Molecular Biology top 0.05%
- RNA and protein synthesis mechanisms
- Protein Structure and Dynamics
- RNA modifications and cancer
- Biochemical and Molecular Research
- RNA Research and Splicing

Papers in

Materials Chemistry 16
- Enzyme Structure and Function 16
- Machine Learning in Materials Science 3
Molecular Biology 18
- Protein Structure and Dynamics 15
- Biochemical and Molecular Research 3
- RNA and protein synthesis mechanisms 3

Co-authors: David Richardson Jane S. Richardson Vincent B. Chen Gary J. Kapral Paul D. Adams Nigel W. Moriarty Nathaniel Echols Pavel V. Afonine
Journals: Protein Science (2 papers)Journal of Applied Crystallography (2 papers)Nature Methods (1 paper)Methods (1 paper)Spine (1 paper)
Partner nations: United States United Kingdom France

In The Last Decade

Jeffrey J. Headd

19 papers receiving 39.0k citations

Hit Papers

5 papers align trajectories log scale

MolProbity: More and better reference data for improved all‐atom structure validation 2017 · 2.8k citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2017 Protein Science
2012 Acta Crystallographica Section D Biological Crystallography
2011 Methods
2010 Acta Crystallographica Section D Biological Crystallography
2009 Acta Crystallographica Section D Biological Crystallography

Peers

Countries citing papers authored by Jeffrey J. Headd

Since Specialization

Citations

This map shows the geographic impact of Jeffrey J. Headd's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jeffrey J. Headd with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jeffrey J. Headd more than expected).

Fields of papers citing papers by Jeffrey J. Headd

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jeffrey J. Headd. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jeffrey J. Headd. The network helps show where Jeffrey J. Headd may publish in the future.

Co-authors

The 25 scholars most cited alongside Jeffrey J. Headd, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Jeffrey J. Headd Line = papers co-authored together Jeffrey J. Headd links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Preoperative Behavioral Health, Opioid, and Antidepressant Utilization and 2-year Costs After Spinal Fusion—Revelations From Cluster Analysis Spine ·Jason Lerner, Jill Ruppenkamp, Katherine Etter, Jeffrey J. Headd, Samir Bhattacharyya, A.M. Menzie, J.B. Pracyk, Kevin J. McGuire	2019	11
2	IMP1 3′ UTR shortening enhances metastatic burden in colorectal cancer Carcinogenesis ·Sarah F. Andres, Kathy N. Williams, Jacqueline B. Plesset, Jeffrey J. Headd, Rei Mizuno, Priya Chatterji, Ashley Lento, Andres J. Klein–Szanto, Rosemarie Mick, Kathryn E. Hamilton, Anil K. Rustgi	2018	18
3	MolProbity: More and better reference data for improved all‐atom structure validation Protein Science ·Christopher J. Williams, Jeffrey J. Headd, Nigel W. Moriarty, Michael G. Prisant, Lizbeth L. Videau, L.N. Deis, Vishal Verma, D.A. Keedy, Bradley J. Hintze, Vincent B. Chen, Swati Jain, Steven M. Lewis, W.B. Arendall, Jack Snoeyink, Paul D. Adams, Simon C. Lovell, Jane S. Richardson, David Richardson Hit paper breakdown →	2017	2815
4	Interactive comparison and remediation of collections of macromolecular structures Protein Science ·Nigel W. Moriarty, Dorothée Liebschner, Herbert E. Klei, Nathaniel Echols, Pavel V. Afonine, Jeffrey J. Headd, Billy K. Poon, Paul D. Adams	2017	10
5	Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement Acta Crystallographica Section D Biological Crystallography ·Jeffrey J. Headd, Nathaniel Echols, Pavel V. Afonine, Nigel W. Moriarty, Richard J. Gildea, Paul D. Adams	2014	20
6	Improved low-resolution crystallographic refinement with Phenix and Rosetta Acta Crystallographica Section A Foundations and Advances ·Nathaniel Echols, Frank DiMaio, Jeffrey J. Headd, Thomas C. Terwilliger, David Baker, Paul D. Adams	2014	0
7	Improved low-resolution crystallographic refinement with Phenix and Rosetta Nature Methods ·Frank DiMaio, Nathaniel Echols, Jeffrey J. Headd, Thomas C. Terwilliger, Paul D. Adams, David Baker	2013	146
8	Automating crystallographic structure solution and refinement of protein–ligand complexes Acta Crystallographica Section D Biological Crystallography ·Nathaniel Echols, Nigel W. Moriarty, Herbert E. Klei, Pavel V. Afonine, G. Bunkóczi, Jeffrey J. Headd, Airlie J. McCoy, Robert D. Oeffner, Randy J. Read, Thomas C. Terwilliger, Paul D. Adams	2013	40
9	Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution Acta Crystallographica Section D Biological Crystallography ·Jeffrey J. Headd, Nathaniel Echols, Pavel V. Afonine, Ralf W. Grosse‐Kunstleve, Vincent B. Chen, Nigel W. Moriarty, David Richardson, Jane S. Richardson, Paul D. Adams	2012	195
10	Towards automated crystallographic structure refinement with phenix.refine Acta Crystallographica Section D Biological Crystallography ·Pavel V. Afonine, Ralf W. Grosse‐Kunstleve, Nathaniel Echols, Jeffrey J. Headd, Nigel W. Moriarty, Marat Mustyakimov, Thomas C. Terwilliger, Alexandre Urzhumtsev, Peter H. Zwart, Paul D. Adams Hit paper breakdown →	2012	4181
11	Graphical tools for macromolecular crystallography inPHENIX Journal of Applied Crystallography ·Nathaniel Echols, Ralf W. Grosse‐Kunstleve, Pavel V. Afonine, G. Bunkóczi, Vincent B. Chen, Jeffrey J. Headd, Airlie J. McCoy, Nigel W. Moriarty, Randy J. Read, David Richardson, Jane S. Richardson, Thomas C. Terwilliger, Paul D. Adams	2012	126
12	Co-Crystal Structures of PKG Iβ (92–227) with cGMP and cAMP Reveal the Molecular Details of Cyclic-Nucleotide Binding PLoS ONE ·Jeong Joo Kim, Darren E. Casteel, Gilbert Y. Huang, Taek Hun Kwon, Ronnie Kuo Ren, Peter H. Zwart, Jeffrey J. Headd, Nicholas G. Brown, Dar-Chone Chow, Timothy Palzkill, Choel Kim	2011	49
13	The Phenix software for automated determination of macromolecular structures Methods ·Paul D. Adams, Pavel V. Afonine, G. Bunkóczi, Vincent B. Chen, Nathaniel Echols, Jeffrey J. Headd, Li‐Wei Hung, Swati Jain, Gary J. Kapral, Ralf W. Grosse Kunstleve, Airlie J. McCoy, Nigel W. Moriarty, Robert D. Oeffner, Randy J. Read, David Richardson, Jane S. Richardson, Thomas C. Terwilliger, Peter H. Zwart Hit paper breakdown →	2011	691
14	PHENIX: a comprehensive Python-based system for macromolecular structure solution Acta Crystallographica Section D Biological Crystallography ·Paul D. Adams, Pavel V. Afonine, G. Bunkóczi, Vincent B. Chen, Ian Davis, Nathaniel Echols, Jeffrey J. Headd, Li‐Wei Hung, Gary J. Kapral, Ralf W. Grosse‐Kunstleve, Airlie J. McCoy, Nigel W. Moriarty, Robert D. Oeffner, Randy J. Read, David Richardson, Jane S. Richardson, Thomas C. Terwilliger, Peter H. Zwart Hit paper breakdown →	2010	18966
15	phenix.model_vs_data: a high-level tool for the calculation of crystallographic model and data statistics Journal of Applied Crystallography ·Pavel V. Afonine, Ralf W. Grosse‐Kunstleve, Vincent B. Chen, Jeffrey J. Headd, Nigel W. Moriarty, Jane S. Richardson, David Richardson, Alexandre Urzhumtsev, Peter H. Zwart, Paul D. Adams	2010	105
16	MolProbity: all-atom structure validation for macromolecular crystallography Acta Crystallographica Section D Biological Crystallography ·Vincent B. Chen, W.B. Arendall, Jeffrey J. Headd, D.A. Keedy, Robert M. Immormino, Gary J. Kapral, Laura W. Murray, Jane S. Richardson, David Richardson Hit paper breakdown →	2009	11415
17	The other 90% of the protein: Assessment beyond the Cαs for CASP8 template‐based and high‐accuracy models Proteins Structure Function and Bioinformatics ·D.A. Keedy, Christopher J. Williams, Jeffrey J. Headd, W.B. Arendall, Vincent B. Chen, Gary J. Kapral, Robert A. Gillespie, Jeremy N. Block, Adam Zemła, David Richardson, Jane S. Richardson	2009	61
18	RNA backbone: Consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution) RNA ·Jane S. Richardson, Bohdan Schneider, Laura W. Murray, Gary J. Kapral, Robert M. Immormino, Jeffrey J. Headd, David Richardson, Daniela Ham, Eli Hershkovits, Loren Dean Williams, Kevin S. Keating, Anna Marie Pyle, David Micallef, John Westbrook, Helen M. Berman	2008	202
19	Autofix for backward-fit sidechains: using MolProbity and real-space refinement to put misfits in their place Journal of Structural and Functional Genomics ·Jeffrey J. Headd, Robert M. Immormino, D.A. Keedy, Paul Emsley, David Richardson, Jane S. Richardson	2008	28
20	Protein−Protein Interfaces: Properties, Preferences, and Projections Journal of Proteome Research ·Jeffrey J. Headd, Y. E. Andrew Ban, Paul D. Brown, Herbert Edelsbrunner, Madhuwanti Vaidya, Johannes Rudolph	2007	24

About Jeffrey J. Headd

Jeffrey J. Headd is a scholar working on Materials Chemistry, Molecular Biology, Computational Theory and Mathematics, Radiation and Cancer Research, having authored 20 papers that have together received 39.1k indexed citations. Recurring topics across this work include Enzyme Structure and Function (16 papers), Protein Structure and Dynamics (15 papers), Computational Drug Discovery Methods (3 papers), Biochemical and Molecular Research (3 papers), RNA and protein synthesis mechanisms (3 papers), Machine Learning in Materials Science (3 papers), Advanced X-ray Imaging Techniques (1 paper) and Spine and Intervertebral Disc Pathology (1 paper). The work is most often cited by research in Structural Biology (727 citations), Molecular Biology (28.2k citations), Molecular Medicine (1.1k citations), Biotechnology (1.8k citations) and Endocrinology (1.0k citations). Jeffrey J. Headd has collaborated with scholars based in United States, United Kingdom and France. Frequent co-authors include David Richardson, Jane S. Richardson, Vincent B. Chen, Gary J. Kapral, Paul D. Adams, Nigel W. Moriarty, Nathaniel Echols, Pavel V. Afonine, Thomas C. Terwilliger and Peter H. Zwart. Their work appears in journals such as Protein Science, Journal of Applied Crystallography, Nature Methods, Methods and Spine.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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