Andrés Berdeja

1.7k citations

21 papers · 1.3k indexed · h-index 17

Molecular Biology top 10%
- DNA and Nucleic Acid Chemistry 15
- RNA Interference and Gene Delivery 12
- Advanced biosensing and bioanalysis techniques 12
- RNA and protein synthesis mechanisms 6
- RNA Research and Splicing 3
- RNA modifications and cancer 1
- Chemical Synthesis and Analysis 1
Cancer Research top 10%
Genetics
Pharmaceutical Science
Genetics
Organic Chemistry
- Click Chemistry and Applications 1

Co-authors: Eric E. Swayze Thazha P. Prakash Punit P. Seth Charles Allerson Hans Gaus Balkrishen Bhat Michael T. Migawa Namir Sioufi
Cited by: Molecular Biology Cancer Research Genetics
Journals: Journal of the American Chemical Society (2 papers)Nucleic Acids Research (5 papers)Journal of Biological Chemistry (1 paper)
Partner nations: United States Australia Switzerland

In The Last Decade

Andrés Berdeja

21 papers receiving 1.3k citations

Peers

Countries citing papers authored by Andrés Berdeja

Since Specialization

Citations

This map shows the geographic impact of Andrés Berdeja's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Andrés Berdeja with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Andrés Berdeja more than expected).

Fields of papers citing papers by Andrés Berdeja

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Andrés Berdeja. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Andrés Berdeja. The network helps show where Andrés Berdeja may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Andrés Berdeja, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Andrés Berdeja Line = papers co-authored together Andrés Berdeja links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Site-specific Incorporation of 2′,5′-Linked Nucleic Acids Enhances Therapeutic Profile of Antisense Oligonucleotides ACS Medicinal Chemistry Letters ·Thazha P. Prakash,Jinghua Yu,Wen Shen,Cheryl Li De Hoyos,Andrés Berdeja,Hans Gaus,Xue‐hai Liang,Stanley T. Crooke,Punit P. Seth	2021	12
2	Towards next generation antisense oligonucleotides: mesylphosphoramidate modification improves therapeutic index and duration of effect of gapmer antisense oligonucleotides Nucleic Acids Research ·Brooke A. Anderson,Graeme C. Freestone,Audrey Low,Cheryl L De-Hoyos,William J. Drury,Michael E. Østergaard,Michael T. Migawa,Michael Fazio,Wei Wan,Andrés Berdeja,Eli Scandalis,Sebastien A. Burel,Timothy A. Vickers,Stanley T. Crooke,Eric E. Swayze,Xue‐hai Liang,Punit P. Seth	2021	89
3	Understanding the effect of controlling phosphorothioate chirality in the DNA gap on the potency and safety of gapmer antisense oligonucleotides Nucleic Acids Research ·Michael E. Østergaard,Cheryl Li De Hoyos,Wei Wan,Wen Shen,Audrey Low,Andrés Berdeja,Guillermo Vasquez,Susan Murray,Michael T. Migawa,Xue‐hai Liang,Eric E. Swayze,Stanley T. Crooke,Punit P. Seth	2020	69
4	Mechanisms of palmitic acid-conjugated antisense oligonucleotide distribution in mice Nucleic Acids Research ·Alfred E. Chappell,Hans Gaus,Andrés Berdeja,Ruchi Gupta,Minji Jo,Thazha P. Prakash,Michael Oestergaard,Eric E. Swayze,Punit P. Seth	2020	41
5	Synthesis, biophysical properties and biological activity of second generation antisense oligonucleotides containing chiral phosphorothioate linkages Nucleic Acids Research ·Wei Wan,Michael T. Migawa,Guillermo Vasquez,Heather Murray,Josh G. Nichols,Hans Gaus,Andrés Berdeja,Sam Lee,Christopher E. Hart,Walt F. Lima,Eric E. Swayze,Punit P. Seth	2014	93
6	Comparison of Duplex Stabilizing Properties of 2′-Fluorinated Nucleic Acid Analogues with Furanose and Non-Furanose Sugar Rings The Journal of Organic Chemistry ·Michael E. Østergaard,Timothy A. Dwight,Andrés Berdeja,Eric E. Swayze,Michael E. Jung,Punit P. Seth	2014	20
7	Widespread recognition of 5′ splice sites by noncanonical base-pairing to U1 snRNA involving bulged nucleotides Genes & Development ·Xavier Roca,Martin Akerman,Hans Gaus,Andrés Berdeja,C. Frank Bennett,Adrian R. Krainer	2012	74
8	Regulation of inflammatory arthritis by the upstream kinase mitogen activated protein kinase kinase 7 in the c-Jun N-Terminal kinase pathway Arthritis Research & Therapy ·Sang Il Lee,David L. Boyle,Andrés Berdeja,Gary S. Firestein	2012	24
9	Structure and nuclease resistance of 2′,4′-constrained 2′-O-methoxyethyl (cMOE) and 2′-O-ethyl (cEt) modified DNAs Chemical Communications ·Pradeep S. Pallan,Charles Allerson,Andrés Berdeja,Punit P. Seth,Eric E. Swayze,Thazha P. Prakash,Martin Egli	2012	64
10	TricycloDNA-modified oligo-2′-deoxyribonucleotides reduce scavenger receptor B1 mRNA in hepatic and extra-hepatic tissues—a comparative study of oligonucleotide length, design and chemistry Nucleic Acids Research ·Sue Murray,Damian Ittig,Erich Koller,Andrés Berdeja,Alfred E. Chappell,Thazha P. Prakash,Michaela Norrbom,Eric E. Swayze,Christian J. Leumann,Punit P. Seth	2012	70
11	Synthesis and biophysical characterization of R-6′-Me-α-l-LNA modified oligonucleotides Bioorganic & Medicinal Chemistry Letters ·Punit P. Seth,Jinghua Yu,Charles Allerson,Andrés Berdeja,Eric E. Swayze	2011	13
12	Synthesis, Improved Antisense Activity and Structural Rationale for the Divergent RNA Affinities of 3′-Fluoro Hexitol Nucleic Acid (FHNA and Ara-FHNA) Modified Oligonucleotides Journal of the American Chemical Society ·Martin Egli,Pradeep S. Pallan,Charles Allerson,Thazha P. Prakash,Andrés Berdeja,Jinghua Yu,Sam Lee,Andrew T. Watt,Hans Gaus,Balkrishen Bhat,Eric E. Swayze,Punit P. Seth	2011	59
13	Peptide Nucleic Acids Conjugated to Short Basic Peptides Show Improved Pharmacokinetics and Antisense Activity in Adipose Tissue Journal of Medicinal Chemistry ·Edward V. Wancewicz,Martin A. Maier,Andrew Siwkowski,Klaus Albertshofer,Theodore M. Winger,Andrés Berdeja,Hans Gaus,Timothy A. Vickers,C. Frank Bennett,Brett P. Monia,Richard H. Griffey,Christopher J. Nulf,Jiaxin Hu,David R. Corey,Eric E. Swayze,Garth A. Kinberger	2010	25
14	Replacing the 2′-oxygen with an exocyclic methylene group reverses the stabilization effects of α-l-LNA Bioorganic & Medicinal Chemistry Letters ·Punit P. Seth,Charles Allerson,Andrés Berdeja,Eric E. Swayze	2010	9
15	An Exocyclic Methylene Group Acts As a Bioisostere of the 2′-Oxygen Atom in LNA Journal of the American Chemical Society ·Punit P. Seth,Charles Allerson,Andrés Berdeja,Andrew Siwkowski,Pradeep S. Pallan,Hans Gaus,Thazha P. Prakash,Andrew T. Watt,Martin Egli,Eric E. Swayze	2010	69
16	Synthesis and Biophysical Evaluation of 2′,4′-Constrained 2′O-Methoxyethyl and 2′,4′-Constrained 2′O-Ethyl Nucleic Acid Analogues The Journal of Organic Chemistry ·Punit P. Seth,Guillermo Vasquez,Charles A. Allerson,Andrés Berdeja,Hans Gaus,Garth A. Kinberger,Thazha P. Prakash,Michael T. Migawa,Balkrishen Bhat,Eric E. Swayze	2010	164
17	Human Dicer Binds Short Single-strand and Double-strand RNA with High Affinity and Interacts with Different Regions of the Nucleic Acids Journal of Biological Chemistry ·Walt F. Lima,Heather Murray,Josh G. Nichols,Hongjiang Wu,Hong Sun,Thazha P. Prakash,Andrés Berdeja,Hans Gaus,Stanley T. Crooke	2008	35
18	A GH receptor antisense oligonucleotide inhibits hepatic GH receptor expression, IGF-I production and body weight gain in normal mice Journal of Endocrinology ·George Tachas,Shari A. Lofthouse,Christopher J. Wraight,Brenda F. Baker,Namir Sioufi,R A Jarres,Andrés Berdeja,Alex Rao,Linda M. Kerr,Enrico D’Aniello,Michael J. Waters	2006	23
19	Fully 2‘-Modified Oligonucleotide Duplexes with Improved in Vitro Potency and Stability Compared to Unmodified Small Interfering RNA Journal of Medicinal Chemistry ·Charles Allerson,Namir Sioufi,Russell Jarres,Thazha P. Prakash,Nishant Naik,Andrés Berdeja,Lisa Wanders,Richard H. Griffey,Eric E. Swayze,Balkrishen Bhat	2005	346
20	Comparative Effect of Temperature and Time on Activity of Dipel 2X and MVP Preparations of Bacillus thuringiensis subs. kurstaki on Diamondback Moth (Lepidoptera: Plutellidae) Journal of Economic Entomology ·Jacqueline L. Robertson,Haiganoush K. Preisler,Sen Seong Ng,Leslie A. Hickle,Andrés Berdeja,Wendy Gelernter	1996	8

About Andrés Berdeja

Andrés Berdeja is a scholar working on Molecular Biology, Insect Science and Cancer Research, having authored 21 papers that have together received 1.3k indexed citations. Recurring topics across this work include DNA and Nucleic Acid Chemistry (15 papers), RNA Interference and Gene Delivery (12 papers), Advanced biosensing and bioanalysis techniques (12 papers), RNA and protein synthesis mechanisms (6 papers), RNA Research and Splicing (3 papers), RNA modifications and cancer (1 paper), Click Chemistry and Applications (1 paper) and Chemical Synthesis and Analysis (1 paper). The work is most often cited by research in Molecular Biology (1.2k citations), Cancer Research (176 citations) and Genetics (43 citations). Andrés Berdeja has collaborated with scholars based in United States, Australia and Switzerland. Frequent co-authors include Eric E. Swayze, Thazha P. Prakash, Punit P. Seth, Charles Allerson, Hans Gaus, Balkrishen Bhat, Michael T. Migawa, Namir Sioufi, Richard H. Griffey and Guillermo Vasquez. Their work appears in journals such as Journal of the American Chemical Society, Nucleic Acids Research and Journal of Biological Chemistry.

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