Ramy Farid

11.7k citations

48 papers · 8.2k indexed · 6 hit papers · h-index 28

Impact in

Computational Theory and Mathematics top 0.2%
- Computational Drug Discovery Methods
Physical and Theoretical Chemistry top 0.5%
- Photochemistry and Electron Transfer Studies

Papers in

Physical and Theoretical Chemistry 9
- Photochemistry and Electron Transfer Studies 8
Computational Theory and Mathematics 10
- Computational Drug Discovery Methods 10

Co-authors: Richard A. Friesner Woody Sherman Tyler Day Christopher C. Moser P. Leslie Dutton Matthew P. Jacobson Kurt Warncke Jonathan M. Keske
Journals: Journal of the American Chemical Society (7 papers)Protein Science (4 papers)Nature (2 papers)ChemMedChem (2 papers)Journal of Biological Chemistry (2 papers)
Partner nations: United States Germany Switzerland

In The Last Decade

Ramy Farid

47 papers receiving 8.0k citations

Hit Papers

6 papers align trajectories log scale

Role of the Active-Site Solvent in the Thermodynamics of Factor Xa Ligand Binding 2008 · 526 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2008 Journal of the American Chemical Society
2005 Journal of Computational Chemistry
2005 Chemical Biology & Drug Design
2005 Journal of Medicinal Chemistry
1994 Nature
1992 Nature

Peers

Countries citing papers authored by Ramy Farid

Since Specialization

Citations

This map shows the geographic impact of Ramy Farid's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ramy Farid with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ramy Farid more than expected).

Fields of papers citing papers by Ramy Farid

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ramy Farid. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ramy Farid. The network helps show where Ramy Farid may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Ramy Farid, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Ramy Farid Line = papers co-authored together Ramy Farid links everyone, so they are left out of the graph.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work
1	Modeling the value of predictive affinity scoring in preclinical drug discovery Current Opinion in Structural Biology ·Robert Abel, Eric S. Manas, Richard A. Friesner, Ramy Farid, Lingle Wang	2018	14
2	Development of an All-Atom/Coarse Grain, Mixed Resolution Model for Proteins and their Environment Biophysical Journal ·Jianing Li, Amanda L. Jonsson, Sven Jakobtorweihen, Mee Shelley, Gregory A. Voth, Ramy Farid, John C. Shelley	2014	1
3	The translocation kinetics of antibiotics through porin OmpC: Insights from structure‐based solvation mapping using WaterMap Proteins Structure Function and Bioinformatics ·Brittany Johnson, Sarah Williams, Ramy Farid, Gül Erdemli, Robert A. Pearlstein	2012	36
4	Significant reduction in errors associated with nonbonded contacts in protein crystal structures: automated all-atom refinement withPrimeX Acta Crystallographica Section D Biological Crystallography ·Jeffrey A. Bell, Kenneth L. Ho, Ramy Farid	2012	20
5	Understanding Kinase Selectivity Through Energetic Analysis of Binding Site Waters ChemMedChem ·Daniel D. Robinson, Woody Sherman, Ramy Farid	2010	98
6	A Role for a Specific Cholesterol Interaction in Stabilizing the Apo Configuration of the Human A 2A Adenosine Receptor Structure ·Edward Lyman, Chris Higgs, Byungchan Kim, Dmitry Lupyan, John C. Shelley, Ramy Farid, Gregory A. Voth	2009	105
7	High‐energy water sites determine peptide binding affinity and specificity of PDZ domains Protein Science ·Thijs Beuming, Ramy Farid, Woody Sherman	2009	100
8	Improving database enrichment through ensemble docking Journal of Computer-Aided Molecular Design ·Shashidhar N. Rao, Paul C. Sanschagrin, Jeremy R. Greenwood, Matthew P. Repasky, Woody Sherman, Ramy Farid	2008	58
9	New insights about HERG blockade obtained from protein modeling, potential energy mapping, and docking studies Bioorganic & Medicinal Chemistry ·Ramy Farid, Tyler Day, Richard A. Friesner, Robert A. Pearlstein	2006	406
10	Crystal Structures of Two Bacterial 3-Hydroxy-3-methylglutaryl-CoA Lyases Suggest a Common Catalytic Mechanism among a Family of TIM Barrel Metalloenzymes Cleaving Carbon-Carbon Bonds Journal of Biological Chemistry ·F. Forouhar, Loreta B. Freitas, Ramy Farid, Jordi Benach, M. Abashidze, W. Edstrom, S.M. Vorobiev, Rong Xiao, Thomas Acton, Zhuji Fu, Jung-Ja P. Kim, Henry M. Miziorko, G.T. Montelione, J.F. Hunt	2005	27
11	Integrated Modeling Program, Applied Chemical Theory (IMPACT) Journal of Computational Chemistry ·Jay L. Banks, Jesús Silva Alarcón, Yixiang Cao, Art E. Cho, Wolfgang Damm, Ramy Farid, Anthony K. Felts, Thomas A. Halgren, Daniel T. Mainz, Jon R. Maple, Robert B. Murphy, Dean M. Philipp, Matthew P. Repasky, Linda Y. Zhang, B. J. Berne, Richard A. Friesner, Emilio Gallicchio, Ronald M. Levy Hit paper breakdown →	2005	1195
12	Use of an Induced Fit Receptor Structure in Virtual Screening Chemical Biology & Drug Design ·Woody Sherman, Jesús Silva Alarcón, Ramy Farid Hit paper breakdown →	2005	572
13	Secondary structure in lung surfactant SP-B peptides: IR and CD studies of bulk and monolayer phases Biochimica et Biophysica Acta (BBA) - Biomembranes ·Cuilan Deng, Richard Mendelsohn, Ramy Farid, Carol R. Flach	2001	24
14	Design, synthesis, and characterization of a novel hemoprotein Protein Science ·Zhijin Xu, Ramy Farid	2001	14
15	A new approach to the design of uniquely folded thermally stable proteins Protein Science ·Xin Jiang, Omonova Z.B., Ramy Farid, Hany Farid	2000	42
16	De novo heme proteins from designed combinatorial libraries Protein Science ·Michael H. Hecht, Kathleen M. Vogel, Thomas G. Spiro, He He, Satwik Kamtekar, DAVID KENDALL, Jeremy E. McLean, Ramy Farid	1997	81
17	Differential Binding of HMG1, HMG2, and a Single HMG Box to Cisplatin-Damaged DNA Toxicology and Applied Pharmacology ·Ramy Farid, Marco E. Bianchi, Luca Falciola, Beatrice N. Engelsberg, Paul C. Billings	1996	15
18	Design and synthesis of multi-haem proteins Nature ·Dan E. Robertson, Ramy Farid, Christopher C. Moser, Jeffrey L. Urbauer, Stephen E. Mulholland, Ravindernath Pidikiti, James D. Lear, A. Joshua Wand, William F. DeGrado, P. Leslie Dutton Hit paper breakdown →	1994	479
19	Structure of dicarbonylbis-(μ-3,5-dimethylpyrazolyl)-bis(4-tolyl diphenylphosphinite)diiridium(I)–dichloromethane (1/1) Acta Crystallographica Section C Crystal Structure Communications ·Ramy Farid, L. M. Henling, Harry B. Gray	1993	2
20	Nature of biological electron transfer Nature ·Christopher C. Moser, Jonathan M. Keske, Kurt Warncke, Ramy Farid, P. Leslie Dutton Hit paper breakdown →	1992	1496

About Ramy Farid

Ramy Farid is a scholar working on Physical and Theoretical Chemistry, Computational Theory and Mathematics, Molecular Biology, Electrochemistry and Organic Chemistry, having authored 48 papers that have together received 8.2k indexed citations. Recurring topics across this work include Protein Structure and Dynamics (10 papers), Computational Drug Discovery Methods (10 papers), Photochemistry and Electron Transfer Studies (8 papers), Enzyme Structure and Function (7 papers), Molecular Junctions and Nanostructures (6 papers), Photosynthetic Processes and Mechanisms (5 papers), Porphyrin and Phthalocyanine Chemistry (4 papers) and Click Chemistry and Applications (4 papers). The work is most often cited by research in Computational Theory and Mathematics (1.7k citations), Physical and Theoretical Chemistry (747 citations), Molecular Biology (5.3k citations), Organic Chemistry (1.4k citations) and Cellular and Molecular Neuroscience (811 citations). Ramy Farid has collaborated with scholars based in United States, Germany and Switzerland. Frequent co-authors include Richard A. Friesner, Woody Sherman, Tyler Day, Christopher C. Moser, P. Leslie Dutton, Matthew P. Jacobson, Kurt Warncke, Jonathan M. Keske, Robert Abel and B. J. Berne. Their work appears in journals such as Journal of the American Chemical Society, Protein Science, Nature, ChemMedChem and Journal of Biological Chemistry.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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