Ronald M. Levy

16.0k total citations · 1 hit paper
232 papers, 12.6k citations indexed

About

Ronald M. Levy is a scholar working on Molecular Biology, Atomic and Molecular Physics, and Optics and Spectroscopy. According to data from OpenAlex, Ronald M. Levy has authored 232 papers receiving a total of 12.6k indexed citations (citations by other indexed papers that have themselves been cited), including 153 papers in Molecular Biology, 69 papers in Atomic and Molecular Physics, and Optics and 40 papers in Spectroscopy. Recurrent topics in Ronald M. Levy's work include Protein Structure and Dynamics (116 papers), Spectroscopy and Quantum Chemical Studies (60 papers) and Enzyme Structure and Function (32 papers). Ronald M. Levy is often cited by papers focused on Protein Structure and Dynamics (116 papers), Spectroscopy and Quantum Chemical Studies (60 papers) and Enzyme Structure and Function (32 papers). Ronald M. Levy collaborates with scholars based in United States, Japan and France. Ronald M. Levy's co-authors include Emilio Gallicchio, Martin Karplus, Anthony K. Felts, Michael Andrec, Richard A. Friesner, Karsten Krogh‐Jespersen, Douglas B. Kitchen, Howard Alper, Nobuyuki Matubayasi and Francisco Figueirido and has published in prestigious journals such as Nature, Science and New England Journal of Medicine.

In The Last Decade

Ronald M. Levy

230 papers receiving 12.3k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Integrated Modeling Program, Applied Chemical Theory (IMPACT)

2005 1.2k citations Emilio Gallicchio, Ronald M. Levy et al. Journal of Computational Chemistry profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Ronald M. Levy United States	64	8.2k	3.7k	2.7k	1.8k	1.3k	232	12.6k
Thomas Fox Germany	28	9.2k 1.1×	3.0k 0.8×	3.4k 1.2×	1.8k 1.0×	1.5k 1.1×	56	15.1k
S. Swaminathan United States	30	11.7k 1.4×	2.5k 0.7×	3.2k 1.2×	1.8k 1.0×	1.2k 0.9×	54	16.8k
Johan Åqvist Sweden	57	9.5k 1.2×	2.2k 0.6×	2.3k 0.8×	1.1k 0.6×	1.8k 1.4×	204	13.4k
Pedro E. M. Lopes United States	23	7.2k 0.9×	2.2k 0.6×	2.1k 0.8×	1.1k 0.6×	1.2k 0.9×	40	11.6k
Robert E. Bruccoleri United States	30	13.8k 1.7×	2.5k 0.7×	3.8k 1.4×	1.9k 1.0×	1.4k 1.0×	58	18.8k
Henk Bekker Netherlands	11	9.0k 1.1×	1.9k 0.5×	2.5k 0.9×	1.1k 0.6×	1.2k 0.9×	20	15.5k
Robert D. Skeel United States	36	12.4k 1.5×	2.9k 0.8×	3.3k 1.2×	1.5k 0.8×	1.8k 1.4×	105	20.9k
Gerrit Groenhof Finland	39	9.5k 1.2×	3.5k 0.9×	3.2k 1.2×	1.3k 0.7×	1.4k 1.1×	87	18.7k
David J. States United States	32	13.9k 1.7×	2.6k 0.7×	3.7k 1.4×	3.0k 1.7×	1.2k 0.9×	75	20.1k
Hsing Lee United States	7	10.3k 1.2×	3.6k 1.0×	3.5k 1.3×	1.6k 0.9×	1.2k 0.9×	8	19.2k

Countries citing papers authored by Ronald M. Levy

Since Specialization

Citations

This map shows the geographic impact of Ronald M. Levy's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ronald M. Levy with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ronald M. Levy more than expected).

Fields of papers citing papers by Ronald M. Levy

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ronald M. Levy. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ronald M. Levy. The network helps show where Ronald M. Levy may publish in the future.

Co-authorship network of co-authors of Ronald M. Levy

This figure shows the co-authorship network connecting the top 25 collaborators of Ronald M. Levy. A scholar is included among the top collaborators of Ronald M. Levy based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Ronald M. Levy. Ronald M. Levy is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Levy, Ronald M., et al.. (2025). Phylogenetic corrections and higher-order sequence statistics in protein families: Potts vs multiple sequence alignment transformer machine learning models. Physical Review Research. 7(4).

Choudhuri, Indrani, Tao Jing, Avik Biswas, et al.. (2025). BPS2025 - Structural and mechanistic insights into cabotegravir resistance in HIV-1 integrase. Biophysical Journal. 124(3). 176a–177a.

Levy, Ronald M., et al.. (2025). BPS2025 - Phylogenetic corrections and higher-order sequence statistics in protein families: The Potts model and MSA transformer showdown. Biophysical Journal. 124(3). 487a–487a. 1 indexed citations

Thakur, Abhishek, et al.. (2024). Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases. Nature Communications. 15(1). 6545–6545. 5 indexed citations

Passos, Dario Oliveira, Steven J. Smith, Avik Biswas, et al.. (2023). Mechanisms of HIV-1 integrase resistance to dolutegravir and potent inhibition of drug-resistant variants. Science Advances. 9(29). eadg5953–eadg5953. 17 indexed citations

Levy, Ronald M., Nobuyuki Matubayasi, & Bin W. Zhang. (2020). Solvation Thermodynamics from the Perspective of Endpoints DFT. The Journal of Physical Chemistry B. 124(52). 11771–11782. 4 indexed citations

Zhang, Bin W., Nobuyuki Matubayasi, & Ronald M. Levy. (2020). Cavity Particle in Aqueous Solution with a Hydrophobic Solute: Structure, Energetics, and Functionals. The Journal of Physical Chemistry B. 124(25). 5220–5237. 1 indexed citations

Ishii, Yoshiki, Naoki Yamamoto, Nobuyuki Matubayasi, et al.. (2019). Spatially-Decomposed Free Energy of Solvation Based on the Endpoint Density-Functional Method. Journal of Chemical Theory and Computation. 15(5). 2896–2912. 13 indexed citations

Zhang, Bin W., Di Cui, Nobuyuki Matubayasi, & Ronald M. Levy. (2018). The Excess Chemical Potential of Water at the Interface with a Protein from End Point Simulations. The Journal of Physical Chemistry B. 122(17). 4700–4707. 8 indexed citations

10.

Haldane, Allan, William F. Flynn, Peng He, & Ronald M. Levy. (2018). Coevolutionary Landscape of Kinase Family Proteins: Sequence Probabilities and Functional Motifs. Biophysical Journal. 114(1). 21–31. 19 indexed citations

11.

Cui, Di, Bin W. Zhang, Nobuyuki Matubayasi, & Ronald M. Levy. (2017). The Role of Interfacial Water in Protein–Ligand Binding: Insights from the Indirect Solvent Mediated Potential of Mean Force. Journal of Chemical Theory and Computation. 14(2). 512–526. 25 indexed citations

12.

Gallicchio, Emilio, Haoyuan Chen, Michael Fitzgerald, et al.. (2015). BEDAM binding free energy predictions for the SAMPL4 octa-acid host challenge. Journal of Computer-Aided Molecular Design. 29(4). 315–325. 16 indexed citations

13.

Andrec, Michael, David A. Snyder, Zhiyong Zhou, et al.. (2007). A large data set comparison of protein structures determined by crystallography and NMR: Statistical test for structural differences and the effect of crystal packing. Proteins Structure Function and Bioinformatics. 69(3). 449–465. 96 indexed citations

14.

Gallicchio, Emilio, et al.. (2005). Conformational Equilibria and Free Energy Profiles for the Allosteric Transition of the Ribose-binding Protein. Journal of Molecular Biology. 353(1). 196–210. 66 indexed citations

15.

Gallicchio, Emilio & Ronald M. Levy. (2004). AGBNP: An analytic implicit solvent model suitable for molecular dynamics simulations and high‐resolution modeling. Journal of Computational Chemistry. 25(4). 479–499. 270 indexed citations

16.

Andrec, Michael & Ronald M. Levy. (2002). Protein sequential resonance assignments by combinatorial enumeration using 13Cα chemical shifts and their (i, i−1) sequential connectivities. Journal of Biomolecular NMR. 23(4). 263–270. 15 indexed citations

17.

Andrec, Michael, G.T. Montelione, & Ronald M. Levy. (2000). Lipari–Szabo mapping: A graphical approach to Lipari–Szabo analysis of NMR relaxation data using reduced spectral density mapping. Journal of Biomolecular NMR. 18(2). 83–100. 15 indexed citations

18.

Matubayasi, Nobuyuki, et al.. (1998). Protein hydration and unfolding – insights from experimental partial specific volumes and unfolded protein models. PubMed. 3(2). 105–118. 84 indexed citations

19.

Kominos, Dorothea, et al.. (1993). Global folding of proteins using a limited number of distance constraints. Protein Engineering Design and Selection. 6(6). 605–614. 31 indexed citations

20.

Metzler, William J., et al.. (1990). Determining local conformational variations in DNA. Journal of Molecular Biology. 214(3). 711–736. 63 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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