Marcin Tabaka

5.6k total citations · 3 hit papers
27 papers, 2.0k citations indexed

About

Marcin Tabaka is a scholar working on Molecular Biology, Genetics and Biophysics. According to data from OpenAlex, Marcin Tabaka has authored 27 papers receiving a total of 2.0k indexed citations (citations by other indexed papers that have themselves been cited), including 21 papers in Molecular Biology, 9 papers in Genetics and 4 papers in Biophysics. Recurrent topics in Marcin Tabaka's work include Bacterial Genetics and Biotechnology (7 papers), Single-cell and spatial transcriptomics (5 papers) and Gene Regulatory Network Analysis (5 papers). Marcin Tabaka is often cited by papers focused on Bacterial Genetics and Biotechnology (7 papers), Single-cell and spatial transcriptomics (5 papers) and Gene Regulatory Network Analysis (5 papers). Marcin Tabaka collaborates with scholars based in Poland, United States and Germany. Marcin Tabaka's co-authors include Robert Hołyst, Aviv Regev, Tomasz Kalwarczyk, Orit Rozenblatt–Rosen, Anna Ochab-Marcinek, Danielle Dionne, Jędrzej Szymański, Monika S. Kowalczyk, Orr Ashenberg and Ayshwarya Subramanian and has published in prestigious journals such as Nature, Cell and Proceedings of the National Academy of Sciences.

In The Last Decade

Marcin Tabaka

27 papers receiving 2.0k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia

2019 558 citations Ninib Baryawno, Dariusz Przybylski et al. Cell profile →
Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming

2019 409 citations Geoffrey Schiebinger, Jian Shu et al. Cell profile →
TIM-3 restrains anti-tumour immunity by regulating inflammasome activation

2021 255 citations Karen O. Dixon, Marcin Tabaka et al. Nature profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Marcin Tabaka Poland	17	1.2k	473	334	267	216	27	2.0k
Angelica Trejo United States	10	1.7k 1.4×	806 1.7×	420 1.3×	163 0.6×	357 1.7×	12	2.6k
László Damjanovich Hungary	13	762 0.7×	613 1.3×	321 1.0×	121 0.5×	142 0.7×	72	2.2k
Martin Falk Czechia	33	2.1k 1.8×	525 1.1×	921 2.8×	101 0.4×	517 2.4×	119	3.8k
Marı́a C. Montoya Spain	30	1.4k 1.2×	1.4k 2.9×	652 2.0×	198 0.7×	284 1.3×	50	3.6k
David Geho United States	21	1.8k 1.5×	303 0.6×	566 1.7×	82 0.3×	363 1.7×	33	2.8k
Thomas P. Kole United States	21	941 0.8×	914 1.9×	339 1.0×	63 0.2×	447 2.1×	39	3.0k
Stefan Seidl Germany	31	522 0.5×	251 0.5×	444 1.3×	148 0.6×	316 1.5×	70	3.3k
Partha Roy United States	31	1.0k 0.9×	170 0.4×	315 0.9×	138 0.5×	635 2.9×	120	3.1k
Matthew B. Hale United States	10	1.4k 1.2×	518 1.1×	423 1.3×	201 0.8×	182 0.8×	14	2.2k

Countries citing papers authored by Marcin Tabaka

Since Specialization

Citations

This map shows the geographic impact of Marcin Tabaka's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Marcin Tabaka with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Marcin Tabaka more than expected).

Fields of papers citing papers by Marcin Tabaka

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Marcin Tabaka. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Marcin Tabaka. The network helps show where Marcin Tabaka may publish in the future.

Co-authorship network of co-authors of Marcin Tabaka

This figure shows the co-authorship network connecting the top 25 collaborators of Marcin Tabaka. A scholar is included among the top collaborators of Marcin Tabaka based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Marcin Tabaka. Marcin Tabaka is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Gao, Fangyuan, Aleksander Tworak, Zhiqian Dong, et al.. (2024). Restoring retinal polyunsaturated fatty acid balance and retina function by targeting ceramide in AdipoR1-deficient mice. Journal of Biological Chemistry. 300(5). 107291–107291. 2 indexed citations

Du, Samuel W., Elliot H. Choi, Susie Suh, et al.. (2024). Conditional deletion of miR-204 and miR-211 in murine retinal pigment epithelium results in retinal degeneration. Journal of Biological Chemistry. 300(6). 107344–107344. 1 indexed citations

Dong, Zhiqian, Grażyna Palczewska, Jianye Zhang, et al.. (2023). Distinct mouse models of Stargardt disease display differences in pharmacological targeting of ceramides and inflammatory responses. Proceedings of the National Academy of Sciences. 120(50). e2314698120–e2314698120. 7 indexed citations

Jonghe, Joachim De, Tomasz S. Kamiński, David B. Morse, et al.. (2023). spinDrop: a droplet microfluidic platform to maximise single-cell sequencing information content. Nature Communications. 14(1). 4788–4788. 34 indexed citations

Dixon, Karen O., Marcin Tabaka, Markus A. Schramm, et al.. (2021). TIM-3 restrains anti-tumour immunity by regulating inflammasome activation. Nature. 595(7865). 101–106. 255 indexed citations breakdown →

Li, Bo, Joshua Gould, Yiming Yang, et al.. (2020). Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq. Nature Methods. 17(8). 793–798. 84 indexed citations

Baryawno, Ninib, Dariusz Przybylski, Monika S. Kowalczyk, et al.. (2019). A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia. Cell. 177(7). 1915–1932.e16. 558 indexed citations breakdown →

Schiebinger, Geoffrey, Jian Shu, Marcin Tabaka, et al.. (2019). Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming. Cell. 176(4). 928–943.e22. 409 indexed citations breakdown →

Ochab-Marcinek, Anna, et al.. (2017). Hill kinetics as a noise filter: the role of transcription factor autoregulation in gene cascades. Physical Chemistry Chemical Physics. 19(33). 22580–22591. 9 indexed citations

10.

Tabaka, Marcin, Krzysztof Burdzy, & Robert Hołyst. (2015). Method for the analysis of contribution of sliding and hopping to a facilitated diffusion of DNA-binding protein: Application toin vivodata. Physical Review E. 92(2). 22721–22721. 4 indexed citations

11.

Ochab-Marcinek, Anna & Marcin Tabaka. (2015). Transcriptional leakage versus noise: A simple mechanism of conversion between binary and graded response in autoregulated genes. Physical Review E. 91(1). 12704–12704. 17 indexed citations

12.

Sozański, Krzysztof, Felix Ruhnow, Agnieszka Wiśniewska, et al.. (2015). Small Crowders Slow Down Kinesin-1 Stepping by Hindering Motor Domain Diffusion. Physical Review Letters. 115(21). 218102–218102. 31 indexed citations

13.

Kalwarczyk, Tomasz, Krzysztof Sozański, Anna Ochab-Marcinek, et al.. (2015). Motion of nanoprobes in complex liquids within the framework of the length-scale dependent viscosity model. Advances in Colloid and Interface Science. 223. 55–63. 66 indexed citations

14.

Tabaka, Marcin, Tomasz Kalwarczyk, & Robert Hołyst. (2013). Quantitative influence of macromolecular crowding on gene regulation kinetics. Nucleic Acids Research. 42(2). 727–738. 49 indexed citations

15.

Kalwarczyk, Tomasz, Marcin Tabaka, & Robert Hołyst. (2012). Biologistics—Diffusion coefficients for complete proteome of Escherichia coli. Bioinformatics. 28(22). 2971–2978. 77 indexed citations

16.

Hou, Sen, Stefan A. Wieczorek, Tomasz S. Kamiński, et al.. (2012). Characterization of Caulobacter crescentus FtsZ Protein Using Dynamic Light Scattering. Journal of Biological Chemistry. 287(28). 23878–23886. 23 indexed citations

17.

Tabaka, Marcin & Robert Hołyst. (2010). Binary and graded evolution in time in a simple model of gene induction. Physical Review E. 82(5). 52902–52902. 6 indexed citations

18.

Ochab-Marcinek, Anna & Marcin Tabaka. (2010). Bimodal gene expression in noncooperative regulatory systems. Proceedings of the National Academy of Sciences. 107(51). 22096–22101. 68 indexed citations

19.

Hołyst, Robert, Anna Bielejewska, Jędrzej Szymański, et al.. (2009). Scaling form of viscosity at all length-scales in poly(ethylene glycol) solutions studied by fluorescence correlation spectroscopy and capillary electrophoresis. Physical Chemistry Chemical Physics. 11(40). 9025–9025. 164 indexed citations

20.

Tabaka, Marcin, Olgierd Cybulski, & Robert Hołyst. (2008). Accurate Genetic Switch in Escherichia coli: Novel Mechanism of Regulation by Co-repressor. Journal of Molecular Biology. 377(4). 1002–1014. 9 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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