Lude Franke

103.5k total citations · 7 hit papers
163 papers, 13.2k citations indexed

About

Lude Franke is a scholar working on Molecular Biology, Genetics and Immunology. According to data from OpenAlex, Lude Franke has authored 163 papers receiving a total of 13.2k indexed citations (citations by other indexed papers that have themselves been cited), including 77 papers in Molecular Biology, 73 papers in Genetics and 29 papers in Immunology. Recurrent topics in Lude Franke's work include Genetic Associations and Epidemiology (41 papers), Bioinformatics and Genomic Networks (18 papers) and Celiac Disease Research and Management (12 papers). Lude Franke is often cited by papers focused on Genetic Associations and Epidemiology (41 papers), Bioinformatics and Genomic Networks (18 papers) and Celiac Disease Research and Management (12 papers). Lude Franke collaborates with scholars based in Netherlands, United States and United Kingdom. Lude Franke's co-authors include Cisca Wijmenga, Alexandra Zhernakova, Vincent Plagnol, Jingyuan Fu, Claudia Giambartolomei, Chris Wallace, Eric E. Schadt, Damjan Vukcevic, Aroon D. Hingorani and Urmo Võsa and has published in prestigious journals such as New England Journal of Medicine, Nature Medicine and Nature Communications.

In The Last Decade

Lude Franke

158 papers receiving 13.0k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Bayesian Test for Colocalisation between Pairs of Genetic Association Studies Using Summary Statistics

2014 1.8k citations Lude Franke et al. PLoS Genetics profile →
Causal relationships among the gut microbiome, short-chain fatty acids and metabolic diseases

2019 1.1k citations Serena Sanna, Alexander Kurilshikov et al. Nature Genetics profile →
Proton pump inhibitors affect the gut microbiome

2015 935 citations Floris Imhann, Marc Jan Bonder et al. Gut profile →
Gene co-expression analysis for functional classification and gene–disease predictions

2016 666 citations Urmo Võsa, Adriaan van der Graaf et al. profile →
Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease

2016 576 citations Floris Imhann, Arnau Vich Vila et al. Gut profile →
The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids

2015 540 citations Jingyuan Fu, Marc Jan Bonder et al. profile →
Biological interpretation of genome-wide association studies using predicted gene functions

2015 359 citations Tune H. Pers, Juha Karjalainen et al. Nature Communications profile →

Peers

Countries citing papers authored by Lude Franke

Since Specialization

Citations

This map shows the geographic impact of Lude Franke's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Lude Franke with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Lude Franke more than expected).

Fields of papers citing papers by Lude Franke

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Lude Franke. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Lude Franke. The network helps show where Lude Franke may publish in the future.

Co-authorship network of co-authors of Lude Franke

This figure shows the co-authorship network connecting the top 25 collaborators of Lude Franke. A scholar is included among the top collaborators of Lude Franke based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Lude Franke. Lude Franke is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Epigenome-wide association study on the plasma metabolome suggests self-regulation of the glycine and serine pathway through DNA methylation 2024 ·Clinical Epigenetics ·(unknown), (unknown), Sergio Andreu‐Sánchez, Torsten Plösch, (unknown), Shuang� Li, Marc Jan Bonder, (unknown), Joyce B. J. van Meurs, Mohsen Ghanbari, Lude Franke, (unknown), Jingyuan Fu, (unknown), Daria V. Zhernakova	3
2	Identification of rare disease genes as drivers of common diseases through tissue-specific gene regulatory networks 2024 ·Scientific Reports ·Olivier B. Bakker, Annique Claringbould, Harm-Jan Westra, (unknown), (unknown), Urmo Võsa, (unknown), Sophie Mulcahy Symmons, (unknown), Marie C. Sadler, Zoltán Kutalik, Iris H. Jonkers, Lude Franke, Patrick Deelen	1
3	PICALO: principal interaction component analysis for the identification of discrete technical, cell-type, and environmental factors that mediate eQTLs 2024 ·Genome biology ·Martijn Vochteloo, Patrick Deelen, (unknown), Ellen Tsai, Heiko Runz, Sergio Andreu‐Sánchez, Jingyuan Fu, Alexandra Zhernakova, Harm-Jan Westra, Lude Franke	1
4	Single-Cell Dissection of the Immune Response After Acute Myocardial Infarction 2024 ·Circulation Genomic and Precision Medicine ·Irene V. van Blokland, Roy Oelen, Hilde E. Groot, Jan Walter Benjamins, Kami Pekayvaz, (unknown), (unknown), Matthias Heinig, Leo Nicolai, Konstantin Stark, Pim van der Harst, Lude Franke, Monique G.P. van der Wijst	6
5	Antibody signatures against viruses and microbiome reflect past and chronic exposures and associate with aging and inflammation 2024 ·iScience ·Sergio Andreu‐Sánchez, (unknown), (unknown), (unknown), (unknown), (unknown), Peter M. Lansdorp, (unknown), Marc Jan Bonder, Lude Franke, Thomas Vogl, Monique G.P. van der Wijst, Marta Melé, (unknown), Jingyuan Fu, (unknown)	2
6	Age-dependent sex differences in cardiometabolic risk factors 2022 ·Nature Cardiovascular Research ·Daria V. Zhernakova, Trishla Sinha, Sergio Andreu‐Sánchez, Jelmer R. Prins, Alexander Kurilshikov, (unknown), Serena Sanna, (unknown), Lude Franke, Jan Albert Kuivenhoven, Alexandra Zhernakova, Jingyuan Fu	30
7	Idéfix: identifying accidental sample mix-ups in biobanks using polygenic scores 2021 ·Bioinformatics ·Robert Warmerdam, Pauline Lanting, (unknown), Patrick Deelen, Lude Franke	1
8	Gender differences in the mental health impact of the COVID-19 lockdown: Longitudinal evidence from the Netherlands 2021 ·SSM - Population Health ·(unknown), Rob Alessie, Jochen O. Mierau, Marike Boezen, (unknown), (unknown), Lude Franke, Jackie Dekens, Patrick Deelen, Pauline Lanting, Judith M. Vonk, Ilja M. Nolte, Anil P. S. Ori, Annique Claringbould, (unknown), (unknown), (unknown), Robert Warmerdam, Soesma A. Jankipersadsing	65
9	Sex and Gender-Related Differences in COVID-19 Diagnoses and SARS-CoV-2 Testing Practices During the First Wave of the Pandemic: The Dutch Lifelines COVID-19 Cohort Study 2021 ·Journal of Women s Health ·Aranka Ballering, Sabine Oertelt‐Prigione, Tim olde Hartman, Judith G.M. Rosmalen, Marike Boezen, Jochen O. Mierau, Lude Franke, Jackie Dekens, Patrick Deelen, Pauline Lanting, Judith M. Vonk, Ilja M. Nolte, Anil P. S. Ori, Annique Claringbould, (unknown), (unknown), (unknown), Robert Warmerdam, Soesma A. Jankipersadsing	18
10	The single-cell eQTLGen consortium 2020 ·eLife ·Monique G.P. van der Wijst, (unknown), Hilde E. Groot, Gosia Trynka, Chung-Chau Hon, Marc Jan Bonder, Oliver Stegle, Martijn C. Nawijn, Youssef Idaghdour, Pim van der Harst, (unknown), Joseph E. Powell, Fabian J. Theis, Ahmed Mahfouz, Matthias Heinig, Lude Franke	116
11	Mendelian randomization while jointly modeling cis genetics identifies causal relationships between gene expression and lipids 2020 ·Nature Communications ·Adriaan van der Graaf, Annique Claringbould, Antoine Rimbert, Bastiaan T. Heijmans, Peter A.C. ’t Hoen, Joyce B. J. van Meurs, Rick Jansen, Lude Franke, Harm-Jan Westra, Yang Li, Cisca Wijmenga, Serena Sanna	27
12	Habitual dietary intake of IBD patients differs from population controls: a case–control study 2020 ·European Journal of Nutrition ·Vera Peters, (unknown), Floris Imhann, Jackie Dekens, Morris A. Swertz, Lude Franke, Cisca Wijmenga, Rinse K. Weersma, Behrooz Z. Alizadeh, Gerard Dijkstra, Marjo Campmans‐Kuijpers	38
13	Integrating GWAS with bulk and single-cell RNA-sequencing reveals a role for LY86 in the anti-Candida host response 2020 ·PLoS Pathogens ·Dylan H. de Vries, Vasiliki Matzaraki, Olivier B. Bakker, Harm Brugge, Harm-Jan Westra, Mihai G. Netea, Lude Franke, Vinod Kumar, Monique G.P. van der Wijst	14
14	Unintended Side Effects of the Digital Transition: European Scientists’ Messages from a Proposition-Based Expert Round Table 2018 ·Sustainability ·Roland W. Scholz, Eric J. Bartelsman, Sarah Diefenbach, Lude Franke, Armin Grünwald, Dirk Helbing, Richard Hill, Lorenz M. Hilty, Mattias Höjer, (unknown), Christian Montag, Peter Parycek, (unknown), Ortwin Renn, André Reichel, Günther Schuh, Gerald Steiner, Gabriela Viale Pereira	90
15	Pathogenic implications for autoimmune mechanisms derived by comparative eQTL analysis of CD4+ versus CD8+ T cells 2017 ·PLoS Genetics ·Silva Kasela, Kai Kisand, Liina Tserel, (unknown), Anu Remm, Krista Fischer, Tōnu Esko, Harm-Jan Westra, Benjamin P. Fairfax, Seiko Makino, Julian C. Knight, Lude Franke, Andres Metspalu, Pärt Peterson, Lili Milani	62
16	Proton pump inhibitors affect the gut microbiome breakdown → 2015 ·Gut ·Floris Imhann, Marc Jan Bonder, Arnau Vich Vila, Jingyuan Fu, Zlatan Mujagic, Lisa Vork, Ettje F. Tigchelaar, Soesma A. Jankipersadsing, María Carmen Cénit, Hermie J. M. Harmsen, Gerard Dijkstra, Lude Franke, Ramnik J. Xavier, Daisy Jonkers, Cisca Wijmenga, Rinse K. Weersma, Alexandra Zhernakova	935
17	Gene expression analysis identifies global gene dosage sensitivity in cancer 2015 ·Nature Genetics ·Rudolf S.N. Fehrmann, Juha Karjalainen, Małgorzata Krajewska, Harm-Jan Westra, David J. Maloney, Anton Simeonov, Tune H. Pers, Joel N. Hirschhorn, Ritsert C. Jansen, Erik Schultes, Herman H. H. B. M. van Haagen, Elisabeth G.E. de Vries, Gerard J. te Meerman, Cisca Wijmenga, Marcel A.T.M. van Vugt, Lude Franke	209
18	Cohort profile: LifeLines DEEP, a prospective, general population cohort study in the northern Netherlands: study design and baseline characteristics 2015 ·BMJ Open ·Ettje F. Tigchelaar, Alexandra Zhernakova, Jackie Dekens, Gerben D. A. Hermes, Agnieszka Barańska, Zlatan Mujagic, Morris A. Swertz, Angélica María Muñoz Contreras, Patrick Deelen, María Carmen Cénit, Lude Franke, Salome Scholtens, Ronald P. Stolk, Cisca Wijmenga, Edith J. M. Feskens	129
19	From genome to function by studying eQTLs 2014 ·Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease ·Harm-Jan Westra, Lude Franke	110
20	Systems Genetics Analysis of Obesity using RNA-Seq Data in an F2 Pig Resource Population 2014 ·Research at the University of Copenhagen (University of Copenhagen) ·Lisette J. A. Kogelman, Daria V. Zhernakova, Harm-Jan Westra, Susanna Cirera, Merete Fredholm, Lude Franke, Haja N. Kadarmideen	1

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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