Stephen J. Clark

7.8k citations

86 papers · 5.0k indexed · 4 hit papers · h-index 31

Impact in

Virology top 0.5%
- HIV Research and Treatment
Infectious Diseases top 1%
- HIV/AIDS Research and Interventions
- HIV/AIDS drug development and treatment

Papers in

Oral Surgery 13
- Dental Radiography and Imaging 9
- Endodontics and Root Canal Treatments 8
Virology 5
- HIV Research and Treatment 5

Co-authors: Wolf Reik Gavin Kelsey John C. Kappes Beatrice H. Hahn George M. Shaw Heather Lee Sébastien A. Smallwood Felix Krueger
Journals: Nature Communications (5 papers)Genome biology (4 papers)Journal of Endodontics (4 papers)Cell Reports (2 papers)Psychological Methods (2 papers)
Partner nations: United Kingdom United States Switzerland

In The Last Decade

Stephen J. Clark

83 papers receiving 4.8k citations

Hit Papers

align trajectories log scale

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells 2018 · 437 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2018 Nature Communications
2016 Nature Methods
1993 Science
1991 New England Journal of Medicine

Peers

Countries citing papers authored by Stephen J. Clark

Since Specialization

Citations

This map shows the geographic impact of Stephen J. Clark's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Stephen J. Clark with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Stephen J. Clark more than expected).

Fields of papers citing papers by Stephen J. Clark

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Stephen J. Clark. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Stephen J. Clark. The network helps show where Stephen J. Clark may publish in the future.

Co-authors

The 25 scholars most cited alongside Stephen J. Clark, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Stephen J. Clark Line = papers co-authored together Stephen J. Clark links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Combinatorial profiling of multiple histone modifications and transcriptome in single cells using scMTR-seq Science Advances ·Yang Wang, Jingyu Li, N C Khanna, W Mansfield, Stephen J. Clark, Ricard Argelaguet, Chadia Belkhaoui, 敏昭須藤, Simon Andrews, Wolf Reik, Gavin Kelsey, Peter J. Rugg‐Gunn	2025	0
2	scEpiAge: an age predictor highlighting single-cell ageing heterogeneity in mouse blood Nature Communications ·Marc Jan Bonder, Stephen J. Clark, Felix Krueger, Michael Petrini, А. М. Чичко, Benjamin W. Early, Thomas M. Stubbs, Anne‐Katrien Stark, Steffen Rulands, Oliver Stegle, Wolf Reik, Ferdinand von Meyenn	2024	4
3	Marmoset and human trophoblast stem cells differ in signaling requirements and recapitulate divergent modes of trophoblast invasion Cell stem cell ·Dionisio Simón Pinto, Pozdniak Ao, Christopher A. Penfold, Timo N. Kohler, Antonia Weberling, Moshe Doljansky, 富夫和田, J. Fester, Premsagar C Desai, Stephen J. Clark, Thomas M. Rawlings, Joshua M. Brickman, Wolf Reik, Jan J. Brosens, Yoshio Kouno, Erika Sasaki, Rüdiger Behr, Florian Hollfelder, Thorsten Boroviak	2024	5
4	Spatial profiling of early primate gastrulation in utero Nature ·Premsagar C Desai, Christopher A. Penfold, 富夫和田, Dionisio Simón Pinto, Charis Drummer, Stephen J. Clark, Stanley E. Strawbridge, Alina Manzoor, Alice Vickers, Mukul Tewary, Timo N. Kohler, Florian Hollfelder, Wolf Reik, Erika Sasaki, Rüdiger Behr, Thorsten Boroviak	2022	68
5	Conserved and unique transcriptional features of pharyngeal arches in the skate ( Leucoraja erinacea ) and evolution of the jaw Molecular Biology and Evolution ·Yongsheng Mao, Victoria A. Sleight, Katharine E. Criswell, Stephen J. Clark, J. Andrew Gillis	2021	11
6	Enhancer-associated H3K4 methylation safeguards in vitro germline competence Nature Communications ·Tore Bleckwehl, Giuliano Crispatzu, D. E. Moen, Patricia Respuela, Shahnawaz Bashir, Chen Liang-Kung, Stephen J. Clark, Kristel M. Dorighi, Miao Lin, Magdalena Laugsch, Wilfred F. J. van IJcken, Miguel Manzanares, Joanna Wysocka, Wolf Reik, Álvaro Rada-Iglesias	2021	23
7	The role of ZFP57 and additional KRAB-zinc finger proteins in the maintenance of human imprinted methylation and multi-locus imprinting disturbances Nucleic Acids Research ·Ana Monteagudo, José Ramón Hernández Mora, Carlos Simón, Adam Burton, Jair Tenorio, Pablo Lapunzina, Stephen J. Clark, Manel Esteller, Gavin Kelsey, Juan Pedro López‐Siguero, Guiomar Pérez de Nanclares, Maria‐Elena Torres‐Padilla, David Monk	2020	33
8	Ageing affects DNA methylation drift and transcriptional cell-to-cell variability in mouse muscle stem cells Nature Communications ·Irene Hernando-Herraez, Brendan Evano, Thomas M. Stubbs, Pierre‐Henri Commère, Marc Jan Bonder, Stephen J. Clark, Simon Andrews, Shahragim Tajbakhsh, Wolf Reik	2019	155
9	scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells Nature Communications ·Stephen J. Clark, Ricard Argelaguet, Chantriolnt-Andreas Kapourani, Thomas M. Stubbs, Heather Lee, Celia Alda-Catalinas, Felix Krueger, Guido Sanguinetti, Gavin Kelsey, John C. Marioni, Oliver Stegle, Wolf Reik Hit paper breakdown →	2018	437
10	Genome-Scale Oscillations in DNA Methylation during Exit from Pluripotency Cell Systems ·Steffen Rulands, Heather Lee, Stephen J. Clark, Christof Angermueller, Sébastien A. Smallwood, Felix Krueger, Hisham Mohammed, Wendy Dean, Jennifer Nichols, Peter J. Rugg‐Gunn, Gavin Kelsey, Oliver Stegle, Benjamin D. Simons, Wolf Reik	2018	54
11	Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing (scBS-seq) Nature Protocols ·Stephen J. Clark, Sébastien A. Smallwood, Heather Lee, Felix Krueger, Wolf Reik, Gavin Kelsey	2017	174
12	Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity Nature Methods ·Christof Angermueller, Stephen J. Clark, Heather Lee, Iain C. Macaulay, Mabel Teng, Xiaoming Hu, Felix Krueger, Sébastien A. Smallwood, Chris P. Ponting, Thierry Voet, Gavin Kelsey, Oliver Stegle, Wolf Reik Hit paper breakdown →	2016	510
13	Effects of imaging system and exposure on accurate detection of the second mesio-buccal canal in maxillary molar teeth Oral Surgery Oral Medicine Oral Pathology Oral Radiology and Endodontology ·Mary Calvert, James P. Scheetz, Stephen J. Clark, Allan G. Farman	2006	25
14	Progressive Federalism? A Gay Liberationist Perspective Albany law review ·Stephen J. Clark	2003	2
15	Perceived quality of radiographic images after rapid processing of D- and F-speed direct-exposure intraoral x-ray films Oral Surgery Oral Medicine Oral Pathology Oral Radiology and Endodontology ·Ina Kandeva, Stephen J. Clark, James P. Scheetz, Allan G. Farman, Dewi Fikrotul Khoiriyah	2003	9
16	Endodontic measurement accuracy and perceived radiograph quality: effects of film speed and density Oral Surgery Oral Medicine Oral Pathology Oral Radiology and Endodontology ·Felix Schneider, Paul D. Eleazer, James P. Scheetz, Stephen J. Clark, Allan G. Farman	2003	16
17	Measurement of Intraosseous Pressures Generated by the Wand, High-Pressure Periodontal Ligament Syringe, and the Stabident System Journal of Endodontics ·Ramcharan Ramanaharan, Paul D. Eleazer, Stephen J. Clark, James P. Scheetz	2001	7
18	The acute retroviral syndrome and the pathogenesis of HIV-1 infection Seminars in Immunology ·Stephen J. Clark, George M. Shaw	1993	24
19	Evaluation of opioid‐induced antinociceptive effects in anaesthetized and conscious animals British Journal of Pharmacology ·Stephen J. Clark, Kim Doo Man, T.W. Smith	1988	31
20	The Help System in the Clinical Laboratory: Laboratory Data in Drug Monitoring and Interpretation of Drug Effects on Laboratory Tests Europe PMC (PubMed Central) ·Stephen J. Clark, J A Emerton, Donald W. McCloskey	1979	1

About Stephen J. Clark

Stephen J. Clark is a scholar working on Oral Surgery, Virology, General Psychology, Geriatrics and Gerontology and Molecular Biology, having authored 86 papers that have together received 5.0k indexed citations. Recurring topics across this work include Epigenetics and DNA Methylation (20 papers), Single-cell and spatial transcriptomics (9 papers), Dental Radiography and Imaging (9 papers), Endodontics and Root Canal Treatments (8 papers), Pluripotent Stem Cells Research (6 papers), Solid-state spectroscopy and crystallography (5 papers), Genomics and Chromatin Dynamics (5 papers) and HIV Research and Treatment (5 papers). The work is most often cited by research in Virology (1.4k citations), Infectious Diseases (993 citations), Oral Surgery (302 citations), Immunology (650 citations) and Aging (53 citations). Stephen J. Clark has collaborated with scholars based in United Kingdom, United States and Switzerland. Frequent co-authors include Wolf Reik, Gavin Kelsey, John C. Kappes, Beatrice H. Hahn, George M. Shaw, Heather Lee, Sébastien A. Smallwood, Felix Krueger, Jeff Lifson and M. Piatak. Their work appears in journals such as Nature Communications, Genome biology, Journal of Endodontics, Cell Reports and Psychological Methods.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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