Julia Ponomarenko

7.9k total citations · 2 hit papers
74 papers, 5.5k citations indexed

About

Julia Ponomarenko is a scholar working on Molecular Biology, Immunology and Cancer Research. According to data from OpenAlex, Julia Ponomarenko has authored 74 papers receiving a total of 5.5k indexed citations (citations by other indexed papers that have themselves been cited), including 60 papers in Molecular Biology, 13 papers in Immunology and 13 papers in Cancer Research. Recurrent topics in Julia Ponomarenko's work include RNA and protein synthesis mechanisms (17 papers), RNA modifications and cancer (12 papers) and vaccines and immunoinformatics approaches (11 papers). Julia Ponomarenko is often cited by papers focused on RNA and protein synthesis mechanisms (17 papers), RNA modifications and cancer (12 papers) and vaccines and immunoinformatics approaches (11 papers). Julia Ponomarenko collaborates with scholars based in Spain, United States and Russia. Julia Ponomarenko's co-authors include Alessandro Sette, Philip E. Bourne, Bjoern Peters, Huynh‐Hoa Bui, Wei Li, Jason Greenbaum, Randi Vita, Ole Lund, Jason D. Clark and Deborah Hix and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Nature Communications.

In The Last Decade

Julia Ponomarenko

71 papers receiving 5.4k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

ElliPro: a new structure-based tool for the prediction of antibody epitopes

2008 1.2k citations Julia Ponomarenko, Philip E. Bourne et al. profile →
The immune epitope database (IEDB) 3.0

2014 803 citations Julia Ponomarenko, Bjoern Peters et al. Nucleic Acids Research profile →

Peers

Countries citing papers authored by Julia Ponomarenko

Since Specialization

Citations

This map shows the geographic impact of Julia Ponomarenko's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Julia Ponomarenko with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Julia Ponomarenko more than expected).

Fields of papers citing papers by Julia Ponomarenko

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Julia Ponomarenko. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Julia Ponomarenko. The network helps show where Julia Ponomarenko may publish in the future.

Co-authorship network of co-authors of Julia Ponomarenko

This figure shows the co-authorship network connecting the top 25 collaborators of Julia Ponomarenko. A scholar is included among the top collaborators of Julia Ponomarenko based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Julia Ponomarenko. Julia Ponomarenko is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Fecal Short-Chain Fatty Acids to Predict Prediabetes and Type 2 Diabetes Risk: An Exploratory Cross-Sectional Study 2025 ·Nutrients ·(unknown), (unknown), Josep Julve, Esmeralda Castelblanco, Julia Ponomarenko, Susana Amézqueta, Joan Vendrell, Josep Franch‐Nadal, Josep Lluı́s Torres, Dı́dac Mauricio, Sara Ramos‐Romero	0
2	Rapid and accurate demultiplexing of direct RNA nanopore sequencing data with SeqTagger 2025 ·Genome Research ·Leszek P. Pryszcz, (unknown), Laia Llovera, Rebeca Medina, (unknown), Luca Cozzuto, Julia Ponomarenko, Eva Maria Novoa	3
3	Dysregulated microRNAs in blood correlate with central nervous system neuropathology of prion disease 2025 ·Veterinary Research ·(unknown), Inmaculada Martín‐Burriel, Luca Cozzuto, Julia Ponomarenko, Juan José Badiola, Rosa Bolea, Janne M. Toivonen	0
4	Native RNA nanopore sequencing reveals antibiotic-induced loss of rRNA modifications in the A- and P-sites 2024 ·Nature Communications ·(unknown), Rebeca Medina, Oguzhan Begik, Luca Cozzuto, (unknown), Sandra Blanco, Julia Ponomarenko, Eva Maria Novoa	12
5	Nuclear localization of MTHFD2 is required for correct mitosis progression 2024 ·Nature Communications ·(unknown), (unknown), Luca Cozzuto, (unknown), Lorena Espinar, (unknown), (unknown), (unknown), (unknown), Laura Martin, Maria Victoria Neguembor, (unknown), Maria Pia Cosma, Laura Batlle‐Morera, Julia Ponomarenko, Sara Sdelci	6
6	Nanopore Direct RNA Sequencing Data Processing and Analysis Using MasterOfPores 2023 ·Methods in molecular biology ·Luca Cozzuto, (unknown), Antonio Hermoso, Eva Maria Novoa, Julia Ponomarenko	10
7	SET-PP2A complex as a new therapeutic target in KMT2A (MLL) rearranged AML 2023 ·Oncogene ·(unknown), (unknown), (unknown), Michael J. Randles, Luca Cozzuto, Vinothini Rajeeve, Armando Cevenini, (unknown), Gabriella Esposito, Julia Ponomarenko, Claire Lucas, Pedro R. Cutillas, John G. Gribben, Owen Williams, Yolanda Calle, Bela Patel, Maria Teresa Esposito	3
8	Impact of COVID-19 Lockdown on the Nasopharyngeal Microbiota of Children and Adults Self-Confined at Home 2022 ·Viruses ·Muntsa Rocafort, Desirée Henares, Pedro Brotons, Cristian Launes, Mariona Fernández de Sevilla, Victòria Fumadó, Irene Barrabeig, (unknown), Alba Redin, Julia Ponomarenko, Maria Melé, Pere Millat-Martínez, Joana Claverol, (unknown), Álex Mira, Juan José García‐García, Quique Bassat, Iolanda Jordán, Carmen Muñoz‐Almagro	13
9	Citizen-science reveals changes in the oral microbiome in Spain through age and lifestyle factors 2022 ·npj Biofilms and Microbiomes ·Jesse R. Willis, Ester Saus, Susana Iraola‐Guzmán, Ewa Księżopolska, Luca Cozzuto, Luis A. Bejarano, Núria Andreu, (unknown), (unknown), (unknown), Elisabetta Broglio, Carlo Carolis, Julia Ponomarenko, Jochen Hecht, Toni Gabaldón	43
10	Influence of Dietary Inulin on Fecal Microbiota, Cardiometabolic Risk Factors, Eicosanoids, and Oxidative Stress in Rats Fed a High-Fat Diet 2022 ·Foods ·(unknown), María Rosa Nogués, (unknown), (unknown), Sara Ramos‐Romero, Josep Lluı́s Torres, Julia Ponomarenko, Susana Amézqueta, Xiang Zhang, Marta Romeu	7
11	Fiber-like Action of d-Fagomine on the Gut Microbiota and Body Weight of Healthy Rats 2022 ·Nutrients ·Sara Ramos‐Romero, Julia Ponomarenko, Susana Amézqueta, (unknown), (unknown), Marta Romeu, Lucía Méndez, Isabel Medina, Josep Lluı́s Torres	1
12	NFAT5 Amplifies Antipathogen Responses by Enhancing Chromatin Accessibility, H3K27 Demethylation, and Transcription Factor Recruitment 2021 ·The Journal of Immunology ·(unknown), Maria Buxadé, Marta Riera-Borrull, (unknown), Sarah Bonnin, Hector Huerga Encabo, (unknown), Diana Reyes-Garau, Luca Cozzuto, Julia Ponomarenko, J. Aramburu, Cristina López-Rodrı́guez	10
13	ExOrthist: a tool to infer exon orthologies at any evolutionary distance 2021 ·Genome biology ·Yamile Márquez, Federica Mantica, Luca Cozzuto, Demián Burguera, Antonio Hermoso, Julia Ponomarenko, Scott William Roy, Manuel Irimia	13
14	MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets 2020 ·Frontiers in Genetics ·Luca Cozzuto, Huanle Liu, Leszek P. Pryszcz, Antonio Hermoso, (unknown), Julia Ponomarenko, Eva Maria Novoa	41
15	External validation of putative biomarkers in eutopic endometrium of women with endometriosis using NanoString technology 2020 ·Journal of Assisted Reproduction and Genetics ·Júlia Vallvé-Juanico, (unknown), Julia Ponomarenko, (unknown), Josep Castellví, A. Ballesteros, Eva Colás, Antonio Gil‐Moreno, Xavier Santamaría	4
16	EV-associated miRNAs from pleural lavage as potential diagnostic biomarkers in lung cancer 2019 ·Scientific Reports ·(unknown), Cristian P. Moiola, Sónia Gatius, Sarah Bonnin, María Ruiz-Miró, Esperanza González, (unknown), (unknown), Antonio Gil‐Moreno, Juan Manuel Falcón‐Pérez, Julia Ponomarenko, José M. Porcel, Xavier Matías‐Guiu, Eva Colás	32
17	Pergola: Boosting Visualization and Analysis of Longitudinal Data by Unlocking Genomic Analysis Tools 2018 ·iScience ·Jose Espinosa‐Carrasco, Ionas Erb, Antonio Hermoso, Julia Ponomarenko, Mara Dierssen, Cédric Notredame	4
18	An atlas of alternative splicing profiles and functional associations reveals new regulatory programs and genes that simultaneously express multiple major isoforms 2017 ·Genome Research ·(unknown), Kevin Ha, Timothy Sterne-Weiler, André Gohr, Ulrich Braunschweig, Antonio Hermoso, Mathieu Quesnel-Vallières, Jon Permanyer, Reza Sodaei, Yamile Márquez, Luca Cozzuto, Xinchen Wang, Melisa Gómez-Velázquez, Teresa Rayón, Miguel Manzanares, Julia Ponomarenko, Benjamin J. Blencowe, Manuel Irimia	265
19	Control of RelB during dendritic cell activation integrates canonical and noncanonical NF-κB pathways 2012 ·Nature Immunology ·(unknown), Jeremy Davis‐Turak, Mónica Macal, (unknown), Julia Ponomarenko, Jeffrey D. Kearns, (unknown), Riku Fagerlund, Masataka Asagiri, Elina I. Zúñiga, Alexander Hoffmann	152
20	IEDB-3D: structural data within the immune epitope database 2010 ·Nucleic Acids Research ·Julia Ponomarenko, (unknown), Dirk M. Zajonc, Bjoern Peters, A Sette, Philip E. Bourne	50

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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