Jason Greenbaum

25.2k citations

82 papers · 9.7k indexed · 9 hit papers · h-index 36

Impact in

Infectious Diseases top 0.2%
- SARS-CoV-2 and COVID-19 Research
- COVID-19 Clinical Research Studies
Immunology top 0.5%
- Immunotherapy and Immune Responses
- T-cell and B-cell Immunology
- Immune Cell Function and Interaction

Papers in

Immunology 37
- Immunotherapy and Immune Responses 22
- T-cell and B-cell Immunology 15
- Immune Cell Function and Interaction 14
Immunology and Allergy 10
- Allergic Rhinitis and Sensitization 10
- Food Allergy and Anaphylaxis Research 7

Co-authors: Bjoern Peters Alessandro Sette Daniela Weiskopf Morten Nielsen Randi Vita John Sidney Aravinda M. de Silva Julia Ponomarenko
Journals: The Journal of Immunology (12 papers)Proceedings of the National Academy of Sciences (8 papers)Nucleic Acids Research (6 papers)Immunology (3 papers)Journal of Allergy and Clinical Immunology (3 papers)
Partner nations: United States Denmark Argentina

In The Last Decade

Jason Greenbaum

80 papers receiving 9.6k citations

Hit Papers

9 papers align trajectories log scale

The receiver operating characteristic curve accurately assesses imbalanced datasets 2024 · 59 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2024 Patterns
2020 Cell
2019 Nucleic Acids Research
2018 Immunology
2018 Cell
2014 Nucleic Acids Research
2013 Proceedings of the National Academy of Sciences
2013 PLoS Computational Biology
2009 Nucleic Acids Research

Peers

Countries citing papers authored by Jason Greenbaum

Since Specialization

Citations

This map shows the geographic impact of Jason Greenbaum's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jason Greenbaum with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jason Greenbaum more than expected).

Fields of papers citing papers by Jason Greenbaum

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jason Greenbaum. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jason Greenbaum. The network helps show where Jason Greenbaum may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Jason Greenbaum, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Jason Greenbaum Line = papers co-authored together Jason Greenbaum links everyone, so they are left out of the graph.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work
1	NetMHCpan-4.2: improved prediction of CD8+ epitopes by use of transfer learning and structural features Frontiers in Immunology ·Carlos R Gil Vega, Jason Greenbaum, Bjoern Peters, Morten Nielsen	2025	2
2	Late-rising CD4 T cells resolve mouse cytomegalovirus persistent replication in the salivary gland PLoS Pathogens ·Agung Brahmanthya Nadine Kepakisan, Gaëlle Picarda, Ankan Gupta, Anna Sapir Abulafia, Bryan McDonald, T. L. Culverwell, Gencho Popov, Jason Greenbaum, Barbara Adler, Grégory Seumois, Michael Croft, Pandurangan Vijayanand, Chris A. Benedict	2024	2
3	A functional identification platform reveals frequent, spontaneous neoantigen-specific T cell responses in patients with cancer Science Translational Medicine ·NANCY J. WILLIAMS, Zeynep Koşaloğlu, A Quaggin, Thomas J. Grade, W. PaulVogt, Angela Frentzen, F Suzuki, Ashmitaa Logandha Ramamoorthy Premlal, Grégory Seumois, Jason Greenbaum, Spencer E. Brightman, 刘香阁, Barbara Tewell, Martin S. Naradikian, Samir Makani, Scott M. Lippman, Alessandro Sette, Ezra E.W. Cohen, Bjoern Peters, Stephen P. Schoenberger	2024	6
4	IEDB‐3D 2.0: Structural data analysis within the Immune Epitope Database Protein Science ·Shreyas Oza, Jarjapu Mahita, Leonardo Vasconcelos Silva, Jason Greenbaum, Brendan Ha, Wendy S. Citrin, Jiyao Wang, Deborah A. Shackelford, Alessandro Sette, Bjoern Peters	2023	19
5	Estimating tissue-specific peptide abundance from public RNA-Seq data Frontiers in Genetics ·Angela Frentzen, Jason Greenbaum, Ana Carolina Araujo Machado, Bjoern Peters, Zeynep Koşaloğlu	2023	3
6	PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins BMC Bioinformatics ·Daniel Marrama, William D. Chronister, A Quaggin, Randi Vita, Zeynep Koşaloğlu, Alessandro Sette, Morten Nielsen, Jason Greenbaum, Bjoern Peters	2023	5
7	Transcriptomics of Acute DENV-Specific CD8+ T Cells Does Not Support Qualitative Differences as Drivers of Disease Severity Vaccines ·Alba Grifoni, Emily Yarnall, Esther Dawen Yu, José Mateus, Nkemajen Eugene Asongafac, Alice Wang, Grégory Seumois, Aruna Dharshan De Silva, Kristyn Rawson, Sunil Premawansa, Gayani Premawansa, Rashmi Tippalagama, Ananda Wijewickrama, Ashu Chawla, Jason Greenbaum, Bjoern Peters, Pandurangan Vijayanand, Daniela Weiskopf, Alessandro Sette	2022	6
8	Towards the prediction of non-peptidic epitopes PLoS Computational Biology ·Paul Zierep, Randi Vita, Leonardo Vasconcelos Silva, Aurélien F. A. Moumbock, Jason Greenbaum, Bjoern Peters, Stefan Günther	2022	2
9	Single-cell eQTL analysis of activated T cell subsets reveals activation and cell type–dependent effects of disease-risk variants Science Immunology ·Benjamin Joachim Schmiedel, V.J. Downie, Vicente Fajardo, 裕允宇都田, Ariel Madrigal, Ciro Ramírez-Suástegui, Sourya Bhattacharyya, Hayley Simon, Jason Greenbaum, Bjoern Peters, Grégory Seumois, Ferhat Ay, Vivek Chandra, Pandurangan Vijayanand	2022	38
10	Tumor cells fail to present MHC-II–restricted epitopes derived from oncogenes to CD4+ T cells JCI Insight ·Spencer E. Brightman, Martin S. Naradikian, Barbara Tewell, 廣志高坂, Thomas J. Grade, W. PaulVogt, Ashmitaa Logandha Ramamoorthy Premlal, Jason Greenbaum, Bjoern Peters, Ezra E.W. Cohen, Aaron M. Miller, Stephen P. Schoenberger	2022	8
11	Transcriptome and chromatin landscape of iNKT cells are shaped by subset differentiation and antigen exposure Nature Communications ·M. Murray, Isaac Engel, Grégory Seumois, Sara Herrera de la Mata, 李領, Eduardo Antonio Stanisci. Pedro, Ashmitaa Logandha Ramamoorthy Premlal, Goo‐Young Seo, Jason Greenbaum, Pandurangan Vijayanand, James Scott‐Browne, Mitchell Kronenberg	2021	25
12	Identifying inaccuracies in gene expression estimates from unstranded RNA-seq data Scientific Reports ·Mikhail Pomaznoy, Eduardo Antonio Stanisci. Pedro, Jason Greenbaum, Bjoern Peters	2019	6
13	Development of Asthma in Inner-City Children: Possible Roles of MAIT Cells and Variation in the Home Environment The Journal of Immunology ·Shilpi Chandra, Gerhard Wingender, Jason Greenbaum, Archana Khurana, Amin Moghaddas Gholami, Anusha-Preethi Ganesan, Michael Rosenbach, Katy F. Jaffee, James E. Gern, Robert A. Wood, George O'connor, Megan Sandel, Meyer Kattan, Leonard B. Bacharier, Alkis Togias, Anthony A. Horner, Mitchell Kronenberg	2018	34
14	Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression Cell ·Benjamin Joachim Schmiedel, Divya Singh, Ariel Madrigal, Pamela Beatrice Carreon, Brandie White, Jose Zapardiel‐Gonzalo, Brendan Ha, Gökmen Altay, Jason Greenbaum, Graham McVicker, Grégory Seumois, Anjana Rao, Mitchell Kronenberg, Bjoern Peters, Pandurangan Vijayanand Hit paper breakdown →	2018	478
15	YAP and MRTF-A, transcriptional co-activators of RhoA-mediated gene expression, are critical for glioblastoma tumorigenicity Oncogene ·EMEPRO, Jorge A. Benítez, Steven W. Plouffe, هالة قابیل, P. Jermołowicz, 真央藤井, Jason Greenbaum, Benjamin Delatte, Anjana Rao, Kun‐Liang Guan, Frank B. Furnari, Olga Meiri Chaim, Shigeki Miyamoto, Joan Heller Brown	2018	50
16	A Systematic Analysis of Pollen Transcriptomes from Plant Allergens Reveals Conserved Targets of Immune Responses Journal of Allergy and Clinical Immunology ·N Divano, Jason Greenbaum, Véronique Schulten, Victoria Tripple, Zihang Jia, April Frazier, Heidi Hofer, Michael Wallner, Alessandro Sette, Bjoern Peters	2015	0
17	Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8 ⁺ T cells Proceedings of the National Academy of Sciences ·Daniela Weiskopf, Michael A. Angelo, Elzinandes Leal de Azeredo, John Sidney, Jason Greenbaum, Anira N. Fernando, Anne Broadwater, Ravi V. Kolla, Aruna Dharshan De Silva, Aravinda M. de Silva, Matías Chávez, Benjamin J. Doranz, Howard M. Grey, Sujan Shresta, Bjoern Peters, Alessandro Sette Hit paper breakdown →	2013	454
18	Meta-analysis of All Immune Epitope Data in the Flavivirus Genus: Inventory of Current Immune Epitope Data Status in the Context of Virus Immunity and Immunopathology Viral Immunology ·Kerrie Vaughan, Jason Greenbaum, Martin Blythe, Bjoern Peters, Alessandro Sette	2010	50
19	Kinetic analysis of a complete poxvirus transcriptome reveals an immediate-early class of genes Proceedings of the National Academy of Sciences ·Erika Assarsson, Jason Greenbaum, Magnus Sundström, Lana Schaffer, Jennifer Hammond, Valérie Pasquetto, Carla Oseroff, R. Curtis Hendrickson, Elliot J. Lefkowitz, David C. Tscharke, John Sidney, Howard M. Grey, Steven R. Head, Bjoern Peters, Alessandro Sette	2008	144
20	Construction of a genome-scale structural map at single-nucleotide resolution Genome Research ·Jason Greenbaum, Bo Pang, Thomas D. Tullius	2007	57

About Jason Greenbaum

Jason Greenbaum is a scholar working on Immunology, Immunology and Allergy, Virology, Molecular Biology and Radiology, Nuclear Medicine and Imaging, having authored 82 papers that have together received 9.7k indexed citations. Recurring topics across this work include vaccines and immunoinformatics approaches (32 papers), Immunotherapy and Immune Responses (22 papers), T-cell and B-cell Immunology (15 papers), Immune Cell Function and Interaction (14 papers), Monoclonal and Polyclonal Antibodies Research (12 papers), Allergic Rhinitis and Sensitization (10 papers), Food Allergy and Anaphylaxis Research (7 papers) and Asthma and respiratory diseases (7 papers). The work is most often cited by research in Infectious Diseases (3.7k citations), Immunology (3.7k citations), Virology (351 citations), Molecular Biology (4.9k citations) and Radiology, Nuclear Medicine and Imaging (1.5k citations). Jason Greenbaum has collaborated with scholars based in United States, Denmark and Argentina. Frequent co-authors include Bjoern Peters, Alessandro Sette, Daniela Weiskopf, Morten Nielsen, Randi Vita, John Sidney, Aravinda M. de Silva, Julia Ponomarenko, Shane Crotty and April Frazier. Their work appears in journals such as The Journal of Immunology, Proceedings of the National Academy of Sciences, Nucleic Acids Research, Immunology and Journal of Allergy and Clinical Immunology.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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