Philip E. Bourne

42.3k citations

255 papers · 16.6k indexed · 5 hit papers · h-index 55

Impact in

Computational Theory and Mathematics top 0.05%
- Computational Drug Discovery Methods
Molecular Biology top 0.2%
- Protein Structure and Dynamics
- vaccines and immunoinformatics approaches
- Bioinformatics and Genomic Networks
- RNA and protein synthesis mechanisms
- Genomics and Phylogenetic Studies
- Machine Learning in Bioinformatics

Papers in ⓘ

Molecular Biology 193
- Protein Structure and Dynamics 79
- Bioinformatics and Genomic Networks 37
- Genomics and Phylogenetic Studies 35
- Genetics, Bioinformatics, and Biomedical Research 34
- RNA and protein synthesis mechanisms 21
- Machine Learning in Bioinformatics 19
Information Systems and Management 19

Co-authors: Ilya N. Shindyalov (26 shared papers)Lei Xie (30 shared papers)Julia Ponomarenko (10 shared papers)John Westbrook (15 shared papers)Helen M. Berman (16 shared papers)Li Xie (13 shared papers)Alessandro Sette (6 shared papers)Wolfgang F. Bluhm (13 shared papers)
Journals: PLoS Computational Biology (33 papers)Bioinformatics (17 papers)Nucleic Acids Research (15 papers)BMC Bioinformatics (13 papers)PLoS Biology (8 papers)
Partner nations: United States United Kingdom Germany

In The Last Decade

Philip E. Bourne

250 papers receiving 16.3k citations

Hit Papers

5 papers align trajectories log scale

How open science helps researchers succeed 2016 · 434 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2016 eLife
2010 Nucleic Acids Research
2008 BMC Bioinformatics
2002 Acta Crystallographica Section D Biological Crystallography
1998 Protein Engineering Design and Selection

Peers

Countries citing papers authored by Philip E. Bourne

Since Specialization

Citations

This map shows the geographic impact of Philip E. Bourne's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Philip E. Bourne with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Philip E. Bourne more than expected).

Fields of papers citing papers by Philip E. Bourne

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Philip E. Bourne. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Philip E. Bourne. The network helps show where Philip E. Bourne may publish in the future.

Co-authors

The 25 scholars most cited alongside Philip E. Bourne, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Philip E. Bourne Line = papers co-authored together Philip E. Bourne links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 255 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	The Protein Data Bank Acta Crystallographica Section D Biological Crystallography ·Helen M. Berman, Tammy Battistuz, Talapady N. Bhat, Wolfgang F. Bluhm, Philip E. Bourne, Kyle Burkhardt, Zukang Feng, Gary L. Gilliland, Lisa Iype, S.C. Jain, Phoebe Fagan, Jessica Marvin, David López Padilla, Ravichandran Veerasamy, Bohdan Schneider, Narmada Thanki, Helge Weissig, John Westbrook, Christine Zardecki Hit paper breakdown →	2002	2025
2	Protein structure alignment by incremental combinatorial extension (CE) of the optimal path Protein Engineering Design and Selection ·Ilya N. Shindyalov, Philip E. Bourne Hit paper breakdown →	1998	1584
3	ElliPro: a new structure-based tool for the prediction of antibody epitopes BMC Bioinformatics ·Julia Ponomarenko, Huynh‐Hoa Bui, Wei Li, Nicholas Fusseder, Philip E. Bourne, Alessandro Sette, Bjoern Peters Hit paper breakdown →	2008	1245
4	The RCSB Protein Data Bank: redesigned web site and web services Nucleic Acids Research ·Peter W. Rose, Bojan Beran, Bi Chen, Wolfgang F. Bluhm, Dimitris Dimitropoulos, David S. Goodsell, Andreas Prlić, Martha Quesada, Gregory B. Quinn, John Westbrook, Jasmine Young, Benjamin T. Yukich, Christine Zardecki, Helen M. Berman, Philip E. Bourne Hit paper breakdown →	2010	516
5	SuperTarget and Matador: resources for exploring drug-target relationships Nucleic Acids Research ·Stefan Günther, Michael Kuhn, Mathias Dunkel, Mónica Campillos, Christian Senger, Evangelia Petsalaki, Jessica Ahmed, E. G. Urdiales, A. Gewiess, Lars Juhl Jensen, Rainer Schneider, R. Skoblo, Robert B. Russell, Philip E. Bourne, Peer Bork, Robert Preißner	2007	477
6	The Protein Data Bank and the challenge of structural genomics. Nature Structural Biology ·Helen M. Berman, Talapady N. Bhat, Philip E. Bourne, Zukang Feng, Gary L. Gilliland, Helge Weissig, John Westbrook	2000	448
7	How open science helps researchers succeed eLife ·Erin C. McKiernan, Philip E. Bourne, C. Titus Brown, Stuart Buck, Amye Kenall, Jennifer Lin, Damon McDougall, Brian A. Nosek, Karthik Ram, Courtney K. Soderberg, Jeffrey R. Spies, Kaitlin Thaney, Andrew Updegrove, Kara Woo, Tal Yarkoni Hit paper breakdown →	2016	434
8	The RCSB Protein Data Bank: views of structural biology for basic and applied research and education Nucleic Acids Research ·Peter W. Rose, Andreas Prlić, Chunxiao Bi, Wolfgang F. Bluhm, Cole Christie, Shuchismita Dutta, Rachel Kramer Green, David S. Goodsell, John Westbrook, Jesse Woo, Jasmine Young, Christine Zardecki, Helen M. Berman, Philip E. Bourne, S.K. Burley	2014	421
9	Immune epitope database analysis resource Nucleic Acids Research ·Young‐Hee Kim, Julia Ponomarenko, Zhenggang Zhu, David Tamang, Peng Wang, Jason Greenbaum, C. Lundegaard, Alessandro Sette, Ole Lund, Philip E. Bourne, Morten Nielsen, Björn Peters	2012	396
10	The RCSB Protein Data Bank: new resources for research and education Nucleic Acids Research ·Peter W. Rose, Chunxiao Bi, Wolfgang F. Bluhm, Cole Christie, Dimitris Dimitropoulos, Shuchismita Dutta, Rachel K. Green, David S. Goodsell, Andreas Prlić, Martha Quesada, Gregory B. Quinn, Alexander G. Ramos, John Westbrook, Jasmine Young, Christine Zardecki, Helen M. Berman, Philip E. Bourne	2012	379
11	Immune epitope database analysis resource (IEDB-AR) Nucleic Acids Research ·Q. Zhang, Peng Wang, Young‐Hee Kim, P. Haste-Andersen, John Beaver, Philip E. Bourne, Huynh‐Hoa Bui, Søren Buus, Sune Pletscher-Frankild, Jason Greenbaum, Ole Lund, C. Lundegaard, Morten Nielsen, Julia Ponomarenko, Alessandro Sette, Zhenggang Zhu, Björn Peters	2008	299
12	Natural language processing of symptoms documented in free-text narratives of electronic health records: a systematic review Journal of the American Medical Informatics Association ·Theresa A. Koleck, Caitlin Dreisbach, Philip E. Bourne, Suzanne Bakken	2018	257
13	Drug Discovery Using Chemical Systems Biology: Repositioning the Safe Medicine Comtan to Treat Multi-Drug and Extensively Drug Resistant Tuberculosis PLoS Computational Biology ·Sarah Kinnings, Nina Liu, N A Buchmeier, Peter J. Tonge, Lei Xie, Philip E. Bourne	2009	244
14	History of biological metal utilization inferred through phylogenomic analysis of protein structures Proceedings of the National Academy of Sciences ·Christopher L. Dupont, Andrew Butcher, Ruben Valas, Philip E. Bourne, Gustavo Caetano‐Anollés	2010	241
15	The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications BMC Bioinformatics ·John L. Moreland, Apostol Gramada, Oleksandr Buzko, Qing Zhang, Philip E. Bourne	2005	228
16	Structural Evolution of the Protein Kinase–Like Superfamily PLoS Computational Biology ·Eric D. Scheeff, Philip E. Bourne	2005	212
17	Drug Discovery Using Chemical Systems Biology: Identification of the Protein-Ligand Binding Network To Explain the Side Effects of CETP Inhibitors PLoS Computational Biology ·Li Xie, Jerry Li, Lei Xie, Philip E. Bourne	2009	206
18	Detecting evolutionary relationships across existing fold space, using sequence order-independent profile–profile alignments Proceedings of the National Academy of Sciences ·Lei Xie, Philip E. Bourne	2008	190
19	Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry Proceedings of the National Academy of Sciences ·Christopher L. Dupont, Song Yang, Brian Palenik, Philip E. Bourne	2006	182
20	Antibody-protein interactions: benchmark datasets and prediction tools evaluation BMC Structural Biology ·Julia Ponomarenko, Philip E. Bourne	2007	173

About Philip E. Bourne

Philip E. Bourne is a scholar working on Molecular Biology, Information Systems and Management, Computational Theory and Mathematics, Health Informatics and Materials Chemistry, having authored 255 papers that have together received 16.6k indexed citations. Recurring topics across this work include Protein Structure and Dynamics (79 papers), Enzyme Structure and Function (57 papers), Bioinformatics and Genomic Networks (37 papers), Computational Drug Discovery Methods (36 papers), Genomics and Phylogenetic Studies (35 papers), Genetics, Bioinformatics, and Biomedical Research (34 papers), RNA and protein synthesis mechanisms (21 papers) and Machine Learning in Bioinformatics (19 papers). The work is most often cited by research in Computational Theory and Mathematics (3.4k citations), Molecular Biology (11.9k citations), Information Systems and Management (591 citations), Health Informatics (93 citations) and Infectious Diseases (1.1k citations). Philip E. Bourne has collaborated with scholars based in United States, United Kingdom and Germany. Frequent co-authors include Ilya N. Shindyalov, Lei Xie, Julia Ponomarenko, John Westbrook, Helen M. Berman, Li Xie, Alessandro Sette, Wolfgang F. Bluhm, Huynh‐Hoa Bui and Helge Weissig. Their work appears in journals such as PLoS Computational Biology, Bioinformatics, Nucleic Acids Research, BMC Bioinformatics and PLoS Biology.

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