Philip E. Bourne

42.3k total citations · 5 hit papers
255 papers, 16.6k citations indexed

About

Philip E. Bourne is a scholar working on Molecular Biology, Materials Chemistry and Computational Theory and Mathematics. According to data from OpenAlex, Philip E. Bourne has authored 255 papers receiving a total of 16.6k indexed citations (citations by other indexed papers that have themselves been cited), including 193 papers in Molecular Biology, 61 papers in Materials Chemistry and 36 papers in Computational Theory and Mathematics. Recurrent topics in Philip E. Bourne's work include Protein Structure and Dynamics (79 papers), Enzyme Structure and Function (57 papers) and Bioinformatics and Genomic Networks (37 papers). Philip E. Bourne is often cited by papers focused on Protein Structure and Dynamics (79 papers), Enzyme Structure and Function (57 papers) and Bioinformatics and Genomic Networks (37 papers). Philip E. Bourne collaborates with scholars based in United States, United Kingdom and Germany. Philip E. Bourne's co-authors include Ilya N. Shindyalov, Lei Xie, Julia Ponomarenko, John Westbrook, Helen M. Berman, Li Xie, Alessandro Sette, Wolfgang F. Bluhm, Huynh‐Hoa Bui and Helge Weissig and has published in prestigious journals such as Nature, Science and Proceedings of the National Academy of Sciences.

In The Last Decade

Philip E. Bourne

250 papers receiving 16.3k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

The Protein Data Bank

2002 2.0k citations Helen M. Berman, Talapady N. Bhat et al. Acta Crystallographica Section D Biological Crystallography profile →
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

1998 1.6k citations Ilya N. Shindyalov, Philip E. Bourne profile →
ElliPro: a new structure-based tool for the prediction of antibody epitopes

2008 1.2k citations Julia Ponomarenko, Philip E. Bourne et al. BMC Bioinformatics profile →
The RCSB Protein Data Bank: redesigned web site and web services

2010 516 citations Wolfgang F. Bluhm, John Westbrook et al. Nucleic Acids Research profile →
How open science helps researchers succeed

2016 434 citations Erin C. McKiernan, Philip E. Bourne et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Philip E. Bourne United States	55	11.9k	3.4k	2.4k	1.3k	1.2k	255	16.6k
Sándor Vajda United States	58	12.0k 1.0×	3.5k 1.0×	2.8k 1.2×	1.8k 1.3×	1.3k 1.1×	239	16.6k
Haim J. Wolfson Israel	61	11.7k 1.0×	3.3k 1.0×	3.7k 1.5×	1.3k 1.0×	885 0.8×	176	16.5k
Alexandre M. J. J. Bonvin Netherlands	68	17.6k 1.5×	2.7k 0.8×	3.8k 1.6×	1.8k 1.3×	1.7k 1.5×	265	22.5k
Gert Vriend Netherlands	63	15.3k 1.3×	1.9k 0.6×	3.7k 1.6×	893 0.7×	1.5k 1.2×	192	21.0k
Matthew P. Jacobson United States	63	11.4k 1.0×	2.6k 0.8×	2.3k 0.9×	884 0.7×	822 0.7×	200	17.2k
Gregory L. Warren United States	19	13.8k 1.2×	2.1k 0.6×	4.2k 1.7×	644 0.5×	1.2k 1.0×	32	18.8k
Alexey V. Onufriev United States	37	13.7k 1.1×	2.5k 0.7×	3.4k 1.4×	701 0.5×	669 0.6×	100	19.0k
Ray Luo United States	43	12.6k 1.1×	2.3k 0.7×	3.3k 1.4×	691 0.5×	612 0.5×	180	17.5k
Jens Meiler United States	63	11.7k 1.0×	2.4k 0.7×	2.9k 1.2×	1.1k 0.9×	553 0.5×	447	16.3k
Thomas Lengauer Germany	67	13.5k 1.1×	4.7k 1.4×	1.3k 0.6×	762 0.6×	1.3k 1.1×	360	25.8k

Countries citing papers authored by Philip E. Bourne

Since Specialization

Citations

This map shows the geographic impact of Philip E. Bourne's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Philip E. Bourne with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Philip E. Bourne more than expected).

Fields of papers citing papers by Philip E. Bourne

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Philip E. Bourne. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Philip E. Bourne. The network helps show where Philip E. Bourne may publish in the future.

Co-authorship network of co-authors of Philip E. Bourne

This figure shows the co-authorship network connecting the top 25 collaborators of Philip E. Bourne. A scholar is included among the top collaborators of Philip E. Bourne based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Philip E. Bourne. Philip E. Bourne is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Zhao, Zheng & Philip E. Bourne. (2024). Advances in reversible covalent kinase inhibitors. Medicinal Research Reviews. 45(2). 629–653. 5 indexed citations

Draizen, Eli J., Stella Veretnik, Cameron Mura, & Philip E. Bourne. (2024). Deep generative models of protein structure uncover distant relationships across a continuous fold space. Nature Communications. 15(1). 8094–8094. 6 indexed citations

Draizen, Eli J., et al.. (2024). Prop3D: A flexible, Python-based platform for machine learning with protein structural properties and biophysical data. BMC Bioinformatics. 25(1). 11–11. 1 indexed citations

McKiernan, Erin C., Lorena A. Barba, Philip E. Bourne, et al.. (2023). Policy recommendations to ensure that research software is openly accessible and reusable. PLoS Biology. 21(7). e3002204–e3002204. 7 indexed citations

Bourne, Philip E.. (2021). Is “bioinformatics” dead?. PLoS Biology. 19(3). e3001165–e3001165. 10 indexed citations

Bonazzi, Vivien & Philip E. Bourne. (2017). Should biomedical research be like Airbnb?. PLoS Biology. 15(4). e2001818–e2001818. 3 indexed citations

Krumholz, Harlan M., Philip E. Bourne, Richard E. Kuntz, et al.. (2016). Data Acquisition, Curation, and Use for a Continuously Learning Health System: A Vital Direction for Health and Health Care. NAM Perspectives. 6(9). 4 indexed citations

Xie, Lei, et al.. (2014). Towards Structural Systems Pharmacology to Study Complex Diseases and Personalized Medicine. PLoS Computational Biology. 10(5). e1003554–e1003554. 48 indexed citations

Xie, Li, et al.. (2011). Drug Discovery Using Chemical Systems Biology: Weak Inhibition of Multiple Kinases May Contribute to the Anti-Cancer Effect of Nelfinavir. PLoS Computational Biology. 7(4). e1002037–e1002037. 125 indexed citations

10.

Kinnings, Sarah, et al.. (2010). The Mycobacterium tuberculosis Drugome and Its Polypharmacological Implications. PLoS Computational Biology. 6(11). e1000976–e1000976. 83 indexed citations

11.

Ponomarenko, Julia, et al.. (2010). IEDB-3D: structural data within the immune epitope database. Nucleic Acids Research. 39(Database). D1164–D1170. 50 indexed citations

12.

Xie, Li, Jerry Li, Lei Xie, & Philip E. Bourne. (2009). Drug Discovery Using Chemical Systems Biology: Identification of the Protein-Ligand Binding Network To Explain the Side Effects of CETP Inhibitors. PLoS Computational Biology. 5(5). e1000387–e1000387. 206 indexed citations

13.

Veretnik, Stella, J. Lynn Fink, & Philip E. Bourne. (2008). Computational Biology Resources Lack Persistence and Usability. PLoS Computational Biology. 4(7). e1000136–e1000136. 28 indexed citations

14.

Yang, Song, Russell F. Doolittle, & Philip E. Bourne. (2005). Phylogeny determined by protein domain content. Proceedings of the National Academy of Sciences. 102(2). 373–378. 165 indexed citations

15.

Bourne, Philip E.. (2004). The Protein Data Bank and lessons in data management. Briefings in Bioinformatics. 5(1). 23–30. 17 indexed citations

16.

Berman, Helen M., Talapady N. Bhat, Wolfgang F. Bluhm, et al.. (2002). The Protein Data Bank (PDB) | NIST. Acta Crystallographica Section D Biological Crystallography. 58. 4 indexed citations

17.

Bhat, Talapady N., Philip E. Bourne, Zukang Feng, et al.. (2001). The PDB Data Uniformity Project | NIST. Nucleic Acids Research. 29(1). 1 indexed citations

18.

Weissig, Helge, Ilya N. Shindyalov, & Philip E. Bourne. (1998). Macromolecular Structure Databases: Past Progress and Future Challenges. Acta Crystallographica Section D Biological Crystallography. 54(6). 1085–1094. 3 indexed citations

19.

Shindyalov, Ilya N. & Philip E. Bourne. (1997). Protein data representation and query using optimized data decomposition. Computer applications in the biosciences. 13(5). 487–496. 6 indexed citations

20.

Fitzgerald, Paula M.D., et al.. (1996). The mmCIF dictionary: community review and final approval. Acta Crystallographica Section A Foundations of Crystallography. 52(a1). C575–C575. 7 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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