Dylan Chivian

8.5k citations

29 papers · 4.3k indexed · 1 hit paper · h-index 24

Impact in

Molecular Biology top 2%
- Protein Structure and Dynamics
- RNA and protein synthesis mechanisms
- Machine Learning in Bioinformatics
- Genomics and Phylogenetic Studies
- Microbial Metabolic Engineering and Bioproduction
Materials Chemistry top 5%
- Enzyme Structure and Function

Papers in

Molecular Biology 26
- Protein Structure and Dynamics 14
- Genomics and Phylogenetic Studies 8
- Machine Learning in Bioinformatics 4
- Microbial Metabolic Engineering and Bioproduction 4
- Glycosylation and Glycoproteins Research 3
Ecology 8
- Microbial Community Ecology and Physiology 7
- Bacteriophages and microbial interactions 4

Co-authors: David Baker David E. Kim Carol A. Rohl Charlie E. M. Strauss Lars Malmström Richard Bonneau Adam P. Arkin Philip Bradley
Journals: Proteins Structure Function and Bioinformatics (9 papers)Nucleic Acids Research (4 papers)Current Opinion in Biotechnology (1 paper)Journal of Bacteriology (1 paper)Methods of biochemical analysis (1 paper)
Partner nations: United States Spain South Korea

In The Last Decade

Dylan Chivian

29 papers receiving 4.2k citations

Hit Papers

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Protein structure prediction and analysis using the Robetta server 2004 · 1.6k citations

Peers

Countries citing papers authored by Dylan Chivian

Since Specialization

Citations

This map shows the geographic impact of Dylan Chivian's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Dylan Chivian with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Dylan Chivian more than expected).

Fields of papers citing papers by Dylan Chivian

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Dylan Chivian. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Dylan Chivian. The network helps show where Dylan Chivian may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Dylan Chivian, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Dylan Chivian Line = papers co-authored together Dylan Chivian links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Single cell genomics indicates horizontal gene transfer and viral infections in a deep subsurface Firmicutes population Frontiers in Microbiology ·Jessica Labonté, Erin K. Field, Maggie C. Y. Lau, Dylan Chivian, Esta van Heerden, K. Eric Wommack, Thomas L. Kieft, T. C. Onstott, Ramūnas Stepanauskas	2015	50
2	Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron Standards in Genomic Sciences ·Kristen M. DeAngelis, Patrik D’haeseleer, Dylan Chivian, Blake A. Simmons, Adam P. Arkin, Konstantinos Mavromatis, Stephanie Malfatti, Susannah G. Tringe, Terry C. Hazen	2013	10
3	Tracing Determinants of Dual Substrate Specificity in Glycoside Hydrolase Family 5 Journal of Biological Chemistry ·Zhiwei Chen, Gregory D. Friedland, J.H. Pereira, 一二美藤井, H J van Rijn, Joshua I. Park, Michael P. Thelen, Paul D. Adams, Adam P. Arkin, Jay D. Keasling, Harvey W. Blanch, Blake A. Simmons, Kenneth L. Sale, Dylan Chivian, Swapnil R. Chhabra	2012	38
4	Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli Microbial Cell Factories ·Adrienne E. McKee, Ludmila Trofimova, Dylan Chivian, 恵祐丸木, Darmawi Juminaga, Dwight Kuo, Peter I. Benke, Jeffrey A. Dietrich, Magali Suzanne, Adam P. Arkin, Christopher J. Petzold, Paul D. Adams, Jay D. Keasling, Swapnil R. Chhabra	2012	50
5	metaMicrobesOnline: phylogenomic analysis of microbial communities Nucleic Acids Research ·Dylan Chivian, Paramvir Dehal, Keith Keller, Adam P. Arkin	2012	14
6	Optimization of a heterologous mevalonate pathway through the use of variant HMG-CoA reductases Metabolic Engineering ·Magali Suzanne, Daniel Álvarez Sirvent, Alyssa M. Redding‐Johanson, Gregory D. Friedland, Rossana Chan, Tanveer S. Batth, John Haliburton, Dylan Chivian, Jay D. Keasling, Christopher J. Petzold, Taek Soon Lee, Swapnil R. Chhabra	2011	128
7	Contribution of mobile genetic elements to Desulfovibrio vulgaris genome plasticity Environmental Microbiology ·C. B. Walker, Sergey Stolyar, Dylan Chivian, Nicolás Pinel, Дмитрий Валентинович Тарлаковский, Paramvir Dehal, Zhili He, Zamin K. Yang, Huei-Che Yen, Jizhong Zhou, Judy D. Wall, Terry C. Hazen, Adam P. Arkin, David A. Stahl	2009	16
8	Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth Science ·Dylan Chivian, Eoin Brodie, Eric J. Alm, David Culley, Paramvir Dehal, Todd Z. DeSantis, Thomas M. Gihring, Alla Lapidus, Li‐Hung Lin, Stephen Lowry, Duane P. Moser, Paul M. Richardson, Gordon Southam, Greg Wanger, Lisa M. Pratt, Gary L. Andersen, Terry C. Hazen, Fred J. Brockman, Adam P. Arkin, T. C. Onstott	2008	329
9	Superfamily Assignments for the Yeast Proteome through Integration of Structure Prediction with the Gene Ontology PLoS Biology ·Lars Malmström, Michael Riffle, Charlie E. M. Strauss, Dylan Chivian, Trisha N. Davis, Richard Bonneau, David Baker	2007	37
10	Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home Proteins Structure Function and Bioinformatics ·Rhiju Das, Bin Qian, Srivatsan Raman, Robert M. Vernon, James Thompson, Philip Bradley, Sagar D. Khare, Michael D. Tyka, Rachel Tuck, Dylan Chivian, David E. Kim, William Sheffler, Lars Malmström, Andrew M. Wollacott, Chu Wang, Ingemar André, David Baker	2007	145
11	Assessment of predictions submitted for the CASP7 domain prediction category Proteins Structure Function and Bioinformatics ·Michael L. Tress, Jianlin Cheng, Pierre Baldi, Keehyoung Joo, 武城有馬, Joo‐Hyun Seo, Jooyoung Lee, David Baker, Dylan Chivian, David E. Kim, Iakes Ezkurdia	2007	61
12	Physically realistic homology models built with rosetta can be more accurate than their templates Proceedings of the National Academy of Sciences ·Kira M.S. Misura, Dylan Chivian, Carol A. Rohl, David E. Kim, David Baker	2006	135
13	Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection Nucleic Acids Research ·Dylan Chivian, David Baker	2006	85
14	Prediction of CASP6 structures using automated robetta protocols Proteins Structure Function and Bioinformatics ·Dylan Chivian, David E. Kim, Lars Malmström, Jack Schonbrun, Carol A. Rohl, David Baker	2005	116
15	Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM Proteins Structure Function and Bioinformatics ·David E. Kim, Dylan Chivian, Lars Malmström, David Baker	2005	87
16	Free modeling with Rosetta in CASP6 Proteins Structure Function and Bioinformatics ·Philip Bradley, Lars Malmström, Bin Qian, Jack Schonbrun, Dylan Chivian, David E. Kim, Jens Meiler, Kira M.S. Misura, David Baker	2005	110
17	Modeling structurally variable regions in homologous proteins with rosetta Proteins Structure Function and Bioinformatics ·Carol A. Rohl, Charlie E. M. Strauss, Dylan Chivian, David Baker	2004	255
18	Protein structure prediction and analysis using the Robetta server Nucleic Acids Research ·David E. Kim, Dylan Chivian, David Baker Hit paper breakdown →	2004	1609
19	Ab Initio Methods Methods of biochemical analysis ·Dylan Chivian, Ola Lædre, Richard Bonneau, David Baker	2003	25
20	De Novo Prediction of Three-dimensional Structures for Major Protein Families Journal of Molecular Biology ·Richard Bonneau, Charlie E. M. Strauss, Carol A. Rohl, Dylan Chivian, S Ildikó, Lars Malmström, Tim Robertson, David Baker	2002	190

About Dylan Chivian

Dylan Chivian is a scholar working on Molecular Biology, Ecology, Biotechnology, Materials Chemistry and Molecular Medicine, having authored 29 papers that have together received 4.3k indexed citations. Recurring topics across this work include Protein Structure and Dynamics (14 papers), Enzyme Structure and Function (10 papers), Genomics and Phylogenetic Studies (8 papers), Microbial Community Ecology and Physiology (7 papers), Machine Learning in Bioinformatics (4 papers), Bacteriophages and microbial interactions (4 papers), Microbial Metabolic Engineering and Bioproduction (4 papers) and Glycosylation and Glycoproteins Research (3 papers). The work is most often cited by research in Molecular Biology (3.3k citations), Materials Chemistry (1.0k citations), Ecology (523 citations), Environmental Chemistry (198 citations) and Biotechnology (167 citations). Dylan Chivian has collaborated with scholars based in United States, Spain and South Korea. Frequent co-authors include David Baker, David E. Kim, Carol A. Rohl, Charlie E. M. Strauss, Lars Malmström, Richard Bonneau, Adam P. Arkin, Philip Bradley, Kira M.S. Misura and Jack Schonbrun. Their work appears in journals such as Proteins Structure Function and Bioinformatics, Nucleic Acids Research, Current Opinion in Biotechnology, Journal of Bacteriology and Methods of biochemical analysis.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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