James Thompson

7.6k total citations · 4 hit papers
61 papers, 3.6k citations indexed

About

James Thompson is a scholar working on Molecular Biology, Education and Materials Chemistry. According to data from OpenAlex, James Thompson has authored 61 papers receiving a total of 3.6k indexed citations (citations by other indexed papers that have themselves been cited), including 13 papers in Molecular Biology, 9 papers in Education and 7 papers in Materials Chemistry. Recurrent topics in James Thompson's work include Protein Structure and Dynamics (7 papers), Enzyme Structure and Function (7 papers) and Design Education and Practice (4 papers). James Thompson is often cited by papers focused on Protein Structure and Dynamics (7 papers), Enzyme Structure and Function (7 papers) and Design Education and Practice (4 papers). James Thompson collaborates with scholars based in United States, Australia and United Kingdom. James Thompson's co-authors include David Baker, Srivatsan Raman, Frank DiMaio, David E. Kim, Elmar Krieger, Jooyoung Lee, Mike Tyka, Keehyoung Joo, Jinwoo Lee and Kevin Karplus and has published in prestigious journals such as Nature Communications, Nature Genetics and SHILAP Revista de lepidopterología.

In The Last Decade

James Thompson

52 papers receiving 3.5k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Improving physical realism, stereochemistry, and side‐chain accuracy in homology modeling: Four approaches that performed well in CASP8

2009 1.1k citations Elmar Krieger, Keehyoung Joo et al. Proteins Structure Function and Bioinformatics profile →
High-Resolution Comparative Modeling with RosettaCM

2013 813 citations Yifan Song, Frank DiMaio et al. Structure profile →
Structure prediction for CASP8 with all‐atom refinement using Rosetta

2009 380 citations Srivatsan Raman, Robert M. Vernon et al. Proteins Structure Function and Bioinformatics profile →
Crystal structure of a monomeric retroviral protease solved by protein folding game players

2011 301 citations Firas Khatib, Frank DiMaio et al. Nature Structural & Molecular Biology profile →

Peers

Countries citing papers authored by James Thompson

Since Specialization

Citations

This map shows the geographic impact of James Thompson's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by James Thompson with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites James Thompson more than expected).

Fields of papers citing papers by James Thompson

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by James Thompson. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by James Thompson. The network helps show where James Thompson may publish in the future.

Co-authorship network of co-authors of James Thompson

This figure shows the co-authorship network connecting the top 25 collaborators of James Thompson. A scholar is included among the top collaborators of James Thompson based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with James Thompson. James Thompson is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Exploring the meaning of campus through lived experiences of students, staff, and visitors 2025 ·Higher Education Research & Development ·James Thompson, Marian Mahat, (unknown), (unknown), Sylvie Lomer, (unknown), Amy Y. Zhang	1
2	Designing effective peer assessment processes in higher education: a systematic review 2024 ·Higher Education Research & Development ·(unknown), James Thompson, (unknown)	3
3	Forensic geoscience non-invasive detection and characterisation of underground clandestine complexes, bunkers, tunnels and firing ranges 2024 ·Forensic Science International ·Jamie K. Pringle, Alastair Ruffell, Peter Styles, (unknown), Ian G. Stimpson, Steven G. Banham, Kristopher D. Wisniewski, S. E. Owen, (unknown), James Thompson	0
4	Unreal … a Typology for Learning from Virtual Site Visits 2023 ·International Journal of Construction Education and Research ·(unknown), James Thompson, (unknown), (unknown)	1
5	‘This is what gets people hired!’: Academic perspectives on employability skills in architecture and the potential impact of COVID-19 2022 ·SHILAP Revista de lepidopterología ·James Thompson, (unknown)	1
6	Impact of the neural correlates of stress and cue reactivity on stress related binge eating in the natural environment 2017 ·Journal of Psychiatric Research ·Sarah Fischer, Lauren Breithaupt, Joseph Wonderlich, Margaret L. Westwater, Ross D. Crosby, Scott G. Engel, James Thompson, Jason M. Lavender, Stephen A. Wonderlich	38
7	The impact of acute stress on the neural processing of food cues in bulimia nervosa: Replication in two samples. 2017 ·Journal of Abnormal Psychology ·Brittany Collins, Lauren Breithaupt, Jennifer E. McDowell, L. Stephen Miller, James Thompson, Sarah Fischer	15
8	Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway 2015 ·Nature Communications ·(unknown), Stephen Tran, Ryan J. Marcheschi, (unknown), James Thompson, David Baker, James C. Liao, Justin B. Siegel	79
9	High-Resolution Comparative Modeling with RosettaCM breakdown → 2013 ·Structure ·Yifan Song, Frank DiMaio, Ray Yu‐Ruei Wang, David E. Kim, Chris Miles, TJ Brunette, James Thompson, David Baker	813
10	Crystal structure of a monomeric retroviral protease solved by protein folding game players breakdown → 2011 ·Nature Structural & Molecular Biology ·(unknown), Firas Khatib, (unknown), Frank DiMaio, Seth Cooper, (unknown), Mirosław Gilski, Szymon Krzywda, Helena Zábranská, Iva Pichová, James Thompson, Zoran Popović, Mariusz Jaskólski, David Baker	301
11	High-resolution structure of a retroviral protease folded as a monomer 2011 ·Acta Crystallographica Section D Biological Crystallography ·Mirosław Gilski, (unknown), Szymon Krzywda, Helena Zábranská, Seth Cooper, Zoran Popović, Firas Khatib, Frank DiMaio, James Thompson, David Baker, Iva Pichová, Mariusz Jaskólski	16
12	Structure‐guided forcefield optimization 2011 ·Proteins Structure Function and Bioinformatics ·Yifan Song, Michael D. Tyka, Andrew Leaver‐Fay, James Thompson, David Baker	38
13	Rosetta in CAPRI rounds 13–19 2010 ·Proteins Structure Function and Bioinformatics ·Sarel J. Fleishman, Jacob E. Corn, (unknown), (unknown), Ingemar André, James Thompson, James J. Havranek, Rhiju Das, Philip Bradley, David Baker	18
14	Improving physical realism, stereochemistry, and side‐chain accuracy in homology modeling: Four approaches that performed well in CASP8 breakdown → 2009 ·Proteins Structure Function and Bioinformatics ·Elmar Krieger, Keehyoung Joo, Jinwoo Lee, Jooyoung Lee, Srivatsan Raman, James Thompson, Mike Tyka, David Baker, Kevin Karplus	1107
15	Structure prediction for CASP8 with all‐atom refinement using Rosetta breakdown → 2009 ·Proteins Structure Function and Bioinformatics ·Srivatsan Raman, Robert M. Vernon, James Thompson, Michael D. Tyka, Ruslan I. Sadreyev, Jimin Pei, David E. Kim, Elizabeth H. Kellogg, Frank DiMaio, Oliver F. Lange, Lisa N. Kinch, William Sheffler, Bong‐Hyun Kim, Rhiju Das, Nick V. Grishin, David Baker	380
16	Efficacy of the Supports Intensity Scale (SIS) to Predict Extraordinary Support Needs 2009 ·American Journal on Intellectual and Developmental Disabilities ·Michael L. Wehmeyer, (unknown), Todd D. Little, James Thompson, Robert L. Schalock, Marc J. Tassé	0
17	Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home 2007 ·Proteins Structure Function and Bioinformatics ·Rhiju Das, Bin Qian, Srivatsan Raman, Robert M. Vernon, James Thompson, Philip Bradley, Sagar D. Khare, Michael D. Tyka, (unknown), Dylan Chivian, David E. Kim, William Sheffler, Lars Malmström, Andrew M. Wollacott, Chu Wang, Ingemar André, David Baker	145
18	Jane Austen and Co.: Remaking the Past in Contemporary Culture 2003 ·State University of New York Press eBooks ·(unknown), James Thompson	2
19	Studies on the Expression of Endothelin, Its Receptor Subtypes, and Converting Enzymes in Lung Cancer and in Human Bronchial Epithelium 2000 ·American Journal of Respiratory Cell and Molecular Biology ·Samreen Ahmed, James Thompson, Judy M. Coulson, Penella J. Woll	89
20	Space Shuttle Main Engine 1980 ·Scholarly Commons (Embry–Riddle Aeronautical University) ·James Thompson	6

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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