Pierre Baldi

53.3k total citations · 17 hit papers
428 papers, 34.1k citations indexed

About

Pierre Baldi is a scholar working on Molecular Biology, Artificial Intelligence and Computational Theory and Mathematics. According to data from OpenAlex, Pierre Baldi has authored 428 papers receiving a total of 34.1k indexed citations (citations by other indexed papers that have themselves been cited), including 173 papers in Molecular Biology, 90 papers in Artificial Intelligence and 47 papers in Computational Theory and Mathematics. Recurrent topics in Pierre Baldi's work include Protein Structure and Dynamics (45 papers), Computational Drug Discovery Methods (39 papers) and Neural Networks and Applications (38 papers). Pierre Baldi is often cited by papers focused on Protein Structure and Dynamics (45 papers), Computational Drug Discovery Methods (39 papers) and Neural Networks and Applications (38 papers). Pierre Baldi collaborates with scholars based in United States, Italy and France. Pierre Baldi's co-authors include Jianlin Cheng, Arlo Randall, Søren Brunak, Laurent Itti, Anthony D. Long, Yves Chauvin, Peter Sadowski, Kurt Hornik, Gianluca Pollastri and Michael J. Sweredoski and has published in prestigious journals such as Cell, Proceedings of the National Academy of Sciences and Journal of the American Chemical Society.

In The Last Decade

Pierre Baldi

414 papers receiving 33.0k citations

Hit Papers

Assessing the accuracy of prediction algorithms for class... 1989 2026 2001 2013 2000 2001 2005 1989 2008 500 1000 1.5k
What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

  1. Assessing the accuracy of prediction algorithms for classification: an overview
    2000 1.6k citations Pierre Baldi et al. Bioinformatics profile →
  2. A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes
    2001 1.3k citations Pierre Baldi et al. Bioinformatics profile →
  3. SCRATCH: a protein structure and structural feature prediction server
    2005 824 citations Jianlin Cheng, Pierre Baldi et al. profile →
  4. Neural networks and principal component analysis: Learning from examples without local minima
    1989 815 citations Pierre Baldi et al. profile →
  5. Bayesian surprise attracts human attention
    2008 807 citations Pierre Baldi et al. profile →
  6. Prediction of protein stability changes for single‐site mutations using support vector machines
    2005 807 citations Jianlin Cheng, Pierre Baldi et al. profile →
  7. Autoencoders, Unsupervised Learning, and Deep Architectures
    2011 728 citations Pierre Baldi profile →
  8. Mitochondrial mutations in cancer
    2006 647 citations Pierre Baldi et al. profile →
  9. Searching for exotic particles in high-energy physics with deep learning
    2014 647 citations Pierre Baldi et al. Nature Communications profile →
  10. Bioinformatics the machine learning approach
    1998 583 citations Pierre Baldi et al. profile →
  11. Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles
    2002 557 citations Pierre Baldi et al. profile →
  12. Reprogramming of the Circadian Clock by Nutritional Challenge
    2013 539 citations Nicholas Ceglia, Saurabh Sahar et al. profile →
  13. Deep Learning Localizes and Identifies Polyps in Real Time With 96% Accuracy in Screening Colonoscopy
    2018 494 citations Gregor Urban, Pierre Baldi et al. profile →
  14. Deep Architectures and Deep Learning in Chemoinformatics: The Prediction of Aqueous Solubility for Drug-Like Molecules
    2013 390 citations Pierre Baldi et al. profile →
  15. Deep-Learning Convolutional Neural Networks Accurately Classify Genetic Mutations in Gliomas
    2018 325 citations Pierre Baldi et al. profile →
  16. Hidden Markov models of biological primary sequence information.
    1994 321 citations Pierre Baldi et al. Proceedings of the National Academy of Sciences profile →
  17. Enforcing Analytic Constraints in Neural Networks Emulating Physical Systems
    2021 197 citations Pierre Baldi et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Pierre Baldi United States 96 15.3k 5.1k 2.8k 2.6k 2.6k 428 34.1k
Todd R. Golub United States 111 77.0k 5.0× 5.1k 1.0× 4.1k 1.5× 3.6k 1.4× 385 0.1× 229 113.9k
Shlomo Havlin Israel 110 9.6k 0.6× 2.8k 0.5× 1.9k 0.7× 572 0.2× 217 0.1× 704 57.1k
Pablo Tamayo United States 52 48.4k 3.2× 5.0k 1.0× 2.2k 0.8× 2.9k 1.1× 328 0.1× 149 74.2k
Jill P. Mesirov United States 55 51.9k 3.4× 4.4k 0.9× 2.0k 0.7× 3.0k 1.2× 362 0.1× 137 80.1k
Eugene W. Myers United States 49 50.9k 3.3× 3.0k 0.6× 1.2k 0.4× 1.2k 0.5× 294 0.1× 126 88.6k
George M. Church United States 148 73.6k 4.8× 2.1k 0.4× 1.8k 0.6× 2.4k 0.9× 371 0.1× 527 90.9k
Uri Alon Israel 74 24.5k 1.6× 2.4k 0.5× 1.8k 0.6× 454 0.2× 420 0.2× 232 35.5k
Klaus Schulten United States 126 63.9k 4.2× 2.0k 0.4× 5.0k 1.8× 3.8k 1.5× 373 0.1× 532 120.6k
Jürgen Kurths Germany 111 6.3k 0.4× 4.9k 1.0× 1.7k 0.6× 450 0.2× 599 0.2× 1.4k 72.8k
James J. Collins United States 142 46.3k 3.0× 1.7k 0.3× 1.8k 0.6× 1.3k 0.5× 210 0.1× 336 76.3k

Countries citing papers authored by Pierre Baldi

Since Specialization
Citations

This map shows the geographic impact of Pierre Baldi's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Pierre Baldi with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Pierre Baldi more than expected).

Fields of papers citing papers by Pierre Baldi

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Pierre Baldi. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Pierre Baldi. The network helps show where Pierre Baldi may publish in the future.

Co-authorship network of co-authors of Pierre Baldi

This figure shows the co-authorship network connecting the top 25 collaborators of Pierre Baldi. A scholar is included among the top collaborators of Pierre Baldi based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Pierre Baldi. Pierre Baldi is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Sica, Valentina, Tomoki Sato, Pierre Baldi, et al.. (2026). The Liver Clock Tunes Transcriptional Rhythms in Skeletal Muscle to Regulate Mitochondrial Function. Journal of Biological Rhythms. 41(2). 278–291.
2.
Chen, Siwei, Leonardo Lupori, Francesco Finamore, et al.. (2023). Brain histone beta-hydroxybutyrylation couples metabolism with gene expression. Cellular and Molecular Life Sciences. 80(1). 28–28. 18 indexed citations
3.
Sagona, Giulia, Siwei Chen, Raffaele Mazziotti, et al.. (2023). Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency. Acta Neuropathologica Communications. 11(1). 34–34. 5 indexed citations
4.
Baldi, Pierre, et al.. (2023). Evaluating the Performance of Large Language Models for Spanish Language in Undergraduate Admissions Exams. Computación y Sistemas. 27(4). 1 indexed citations
5.
Lu, Yadong, et al.. (2022). Resolving extreme jet substructure. Journal of High Energy Physics. 2022(8). 10 indexed citations
6.
Chen, Siwei, Zitong Wang, Léon Mutesa, et al.. (2021). Intergenerational trauma transmission is associated with brain metabotranscriptome remodeling and mitochondrial dysfunction. Communications Biology. 4(1). 783–783. 23 indexed citations
7.
Urban, Gregor, et al.. (2020). Combining Deep Learning With Optical Coherence Tomography Imaging to Determine Scalp Hair and Follicle Counts. Lasers in Surgery and Medicine. 53(1). 171–178. 14 indexed citations
8.
Lena, Pietro Di & Pierre Baldi. (2020). Fold recognition by scoring protein maps using the congruence coefficient. Bioinformatics. 37(4). 506–513. 1 indexed citations
9.
Brami‐Cherrier, Karen, Robert G. Lewis, Marlene Cervantes, et al.. (2020). Cocaine-mediated circadian reprogramming in the striatum through dopamine D2R and PPARγ activation. Nature Communications. 11(1). 4448–4448. 19 indexed citations
10.
Dębski, Konrad J., Nicholas Ceglia, Antoine Ghestem, et al.. (2020). The circadian dynamics of the hippocampal transcriptome and proteome is altered in experimental temporal lobe epilepsy. Science Advances. 6(41). 52 indexed citations
11.
Lee, Christine K., Ira Hofer, Eilon Gabel, Pierre Baldi, & Maxime Cannesson. (2018). Development and Validation of a Deep Neural Network Model for Prediction of Postoperative In-hospital Mortality. Anesthesiology. 129(4). 649–662. 127 indexed citations
12.
Bellet, Marina Maria, Elisa Deriu, Janet Z. Liu, et al.. (2013). Circadian clock regulates the host response to Salmonella. Proceedings of the National Academy of Sciences. 110(24). 9897–9902. 205 indexed citations
13.
Lena, Pietro Di, Ken Nagata, & Pierre Baldi. (2012). Deep Spatio-Temporal Architectures and Learning for Protein Structure Prediction. Archivio istituzionale della ricerca (Alma Mater Studiorum Università di Bologna). 25. 512–520. 26 indexed citations
14.
Baldi, Pierre, Roberta Baronio, Emiliano De Cristofaro, Paolo Gasti, & Gene Tsudik. (2011). Countering Gattaca: Efficient and Secure Testing of Fully-Sequenced Human Genomes. arXiv (Cornell University). 12 indexed citations
15.
Cheng, Jianlin & Pierre Baldi. (2006). A machine learning information retrieval approach to protein fold recognition. Bioinformatics. 22(12). 1456–1463. 168 indexed citations
16.
Jurdak, Raja, Cristina Videira Lopes, & Pierre Baldi. (2005). Modeling and optimization of ad hoc and sensor networks. 21(10). 2601–5. 7 indexed citations
17.
Cheng, Jianlin, Alessandro Vullo, & Pierre Baldi. (2004). Large-Scale Prediction of Disulphide Bond Connectivity. Neural Information Processing Systems. 17. 97–104. 41 indexed citations
18.
McLysaght, Aoife, Pierre Baldi, & Brandon S. Gaut. (2003). Extensive gene gain associated with adaptive evolution of poxviruses. Proceedings of the National Academy of Sciences. 100(26). 15655–15660. 138 indexed citations
19.
Baldi, Pierre. (1995). Gradient descent learning algorithms: a unified perspective. 78(2). 509–541. 1 indexed citations
20.
Baldi, Pierre. (1990). Computing with Arrays of Bell-Shaped and Sigmoid Functions. Neural Information Processing Systems. 3. 735–742. 11 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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