Haim Ashkenazy

10.2k citations

39 papers · 6.9k · 5 hit papers · h-index 23

Impact in

Molecular Biology top 1%
- RNA and protein synthesis mechanisms
- Genomics and Phylogenetic Studies
- Protein Structure and Dynamics
- RNA modifications and cancer
- Protist diversity and phylogeny
Genetics top 2%
- Bacterial Genetics and Biotechnology

Papers in

Molecular Biology 35
- Genomics and Phylogenetic Studies 18
- Protein Structure and Dynamics 12
- RNA and protein synthesis mechanisms 12
- Machine Learning in Bioinformatics 9
- Microbial Metabolic Engineering and Bioproduction 4
- Glycosylation and Glycoproteins Research 4
Genetics 6
- Genetic diversity and population structure 5

Co-authors: Tal Pupko (21 shared papers)Nir Ben‐Tal (11 shared papers)Eric Martz (3 shared papers)Itay Mayrose (4 shared papers)Shiran Abadi (1 shared paper)Elona Erez (1 shared paper)Itamar Sela (2 shared papers)Kazutaka Katoh (1 shared paper)
Journals: Nucleic Acids Research (12 papers)Bioinformatics (4 papers)Genome Biology and Evolution (3 papers)Frontiers in Immunology (3 papers)Systematic Biology (2 papers)
Partner nations: Israel United States Germany

In The Last Decade

Haim Ashkenazy

39 papers receiving 6.8k citations

Haim Ashkenazy's Hit Papers

5 papers align trajectories log scale

ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules 2016 · 2.2k citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2016 Nucleic Acids Research
2015 Nucleic Acids Research
2014 Nucleic Acids Research
2010 Nucleic Acids Research
2010 Nucleic Acids Research

Peers

Countries citing papers authored by Haim Ashkenazy

Since Specialization

Citations

This map shows the geographic impact of Haim Ashkenazy's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Haim Ashkenazy with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Haim Ashkenazy more than expected).

Fields of papers citing papers by Haim Ashkenazy

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Haim Ashkenazy. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Haim Ashkenazy. The network helps show where Haim Ashkenazy may publish in the future.

Co-authors

The 25 scholars most cited alongside Haim Ashkenazy, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Haim Ashkenazy Line = papers co-authored together Haim Ashkenazy links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 39 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules Nucleic Acids Research ·Haim Ashkenazy, Shiran Abadi, Eric Martz, Ofer Chay, Itay Mayrose, Tal Pupko, Nir Ben‐Tal Hit paper breakdown →	2016	2170
2	ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids Nucleic Acids Research ·Haim Ashkenazy, Elona Erez, Eric Martz, Tal Pupko, Nir Ben‐Tal Hit paper breakdown →	2010	1494
3	GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters Nucleic Acids Research ·Itamar Sela, Haim Ashkenazy, Kazutaka Katoh, Tal Pupko Hit paper breakdown →	2015	634
4	GUIDANCE: a web server for assessing alignment confidence scores Nucleic Acids Research ·O.C.K.M. Penn, Eran Privman, Haim Ashkenazy, Giddy Landan, Dan Graur, Tal Pupko Hit paper breakdown →	2010	537
5	PredictProtein—an open resource for online prediction of protein structural and functional features Nucleic Acids Research ·Guy Yachdav, Edda Kloppmann, László Kaján, Maximilian Hecht, Tatyana Goldberg, Tobias Hamp, Peter Hönigschmid, Andrea Schafferhans, Manfred Roos, Michael Bernhofer, Lothar Richter, Haim Ashkenazy, Marco Punta, Avner Schlessinger, Yana Bromberg, Reinhard Schneider, Gerrit Vriend, Chris Sander, Nir Ben‐Tal, Burkhard Rost Hit paper breakdown →	2014	455
6	ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function Israel Journal of Chemistry ·Gershon Celniker, Guy Nimrod, Haim Ashkenazy, Fabian Glaser, Eric Martz, Itay Mayrose, Tal Pupko, Nir Ben‐Tal	2013	414
7	FastML: a web server for probabilistic reconstruction of ancestral sequences Nucleic Acids Research ·Haim Ashkenazy, O.C.K.M. Penn, Adi Doron‐Faigenboim, Ofir Cohen, Gina Cannarozzi, Oren Zomer, Tal Pupko	2012	249
8	ConSurf‐DB: An accessible repository for the evolutionary conservation patterns of the majority of PDB proteins Protein Science ·Adi Ben Chorin, Gal Masrati, Amit Kessel, Aya Narunsky, Josef Sprinzak, Shlomtzion Lahav, Haim Ashkenazy, Nir Ben‐Tal	2019	137
9	GLOOME: gain loss mapping engine Bioinformatics ·Ofir Cohen, Haim Ashkenazy, Frida Belinky, Dorothée Huchon, Tal Pupko	2010	86
10	Spatial metatranscriptomics resolves host–bacteria–fungi interactomes Nature Biotechnology ·Sami Saarenpää, Or Shalev, Haim Ashkenazy, Vanessa Carlos, Derek S. Lundberg, Detlef Weigel, Stefania Giacomello	2023	72
11	Commensal Pseudomonas strains facilitate protective response against pathogens in the host plant Nature Ecology & Evolution ·Or Shalev, Talia L. Karasov, Derek S. Lundberg, Haim Ashkenazy, Pratchaya Pramoj Na Ayutthaya, Detlef Weigel	2022	67
12	Broad phylogenetic analysis of cation/proton antiporters reveals transport determinants Nature Communications ·Gal Masrati, Manish Dwivedi, Abraham Rimon, Yael Gluck-Margolin, Amit Kessel, Haim Ashkenazy, Itay Mayrose, Etana Padan, Nir Ben‐Tal	2018	65
13	Protein stability: a single recorded mutation aids in predicting the effects of other mutations in the same amino acid site Bioinformatics ·Gilad Wainreb, Lior Wolf, Haim Ashkenazy, Yves Dehouck, Nir Ben‐Tal	2011	50
14	Deep Panning: Steps towards Probing the IgOme PLoS ONE ·Arie Ryvkin, Haim Ashkenazy, Larisa Smelyanski, Gilad Kaplan, Osnat Penn, Yael Weiss-Ottolenghi, Eyal Privman, Peter Ngam, James E. Woodward, Gregory D. May, Callum J. Bell, Tal Pupko, Jonathan M. Gershoni	2012	40
15	Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe eLife ·Ella Katz, Jiajie Li, Benjamin Jaegle, Haim Ashkenazy, R. Shawn Abrahams, Clement Bagaza, Samuel Holden, Chris J Pires, Ruthie Angelovici, Daniel J. Kliebenstein	2021	32
16	Peptides modulating conformational changes in secreted chaperones: From in silico design to preclinical proof of concept Proceedings of the National Academy of Sciences ·Yossef Kliger, Ofer Levy, Anat Oren, Haim Ashkenazy, Zohar Tiran, Amit Novik, Avi Z. Rosenberg, Anat Amir, Assaf Wool, Amir Toporik, Ehud Schreiber, Dani Eshel, Zurit Levine, Yossi Cohen, Claudia A. Nold‐Petry, Charles A. Dinarello, Itamar Borukhov	2009	32
17	MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data Nucleic Acids Research ·Gilad Wainreb, Haim Ashkenazy, Yana Bromberg, Alina Starovolsky-Shitrit, Türkan Haliloǧlu, Eytan Ruppin, Karen B. Avraham, Burkhard Rost, Nir Ben‐Tal	2010	31
18	A Truncated Singleton NLR Causes Hybrid Necrosis in Arabidopsis thaliana Molecular Biology and Evolution ·A. Cristina Barragan, Maximilian Collenberg, Jinge Wang, Rachelle R.Q. Lee, Wei Yuan Cher, Fernando A. Rabanal, Haim Ashkenazy, Detlef Weigel, Eunyoung Chae	2020	27
19	Uncovering the co-evolutionary network among prokaryotic genes Bioinformatics ·Ofir Cohen, Haim Ashkenazy, David Burstein, Tal Pupko	2012	26
20	Phage display peptide libraries: deviations from randomness and correctives Nucleic Acids Research ·Arie Ryvkin, Haim Ashkenazy, Yael Weiss-Ottolenghi, Chen Piller, Tal Pupko, Jonathan M. Gershoni	2018	25

About Haim Ashkenazy

Haim Ashkenazy is a scholar working on Molecular Biology, Genetics, Plant Science, Radiology, Nuclear Medicine and Imaging and Materials Chemistry, having authored 39 papers that have together received 6.9k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (18 papers), Protein Structure and Dynamics (12 papers), RNA and protein synthesis mechanisms (12 papers), Machine Learning in Bioinformatics (9 papers), Genetic diversity and population structure (5 papers), Microbial Metabolic Engineering and Bioproduction (4 papers), Glycosylation and Glycoproteins Research (4 papers) and Enzyme Structure and Function (4 papers). The work is most often cited by research in Molecular Biology (4.7k citations), Genetics (1.1k citations), Cell Biology (627 citations), Ecology (772 citations) and Endocrinology (141 citations). Haim Ashkenazy has collaborated with scholars based in Israel, United States and Germany. Frequent co-authors include Tal Pupko, Nir Ben‐Tal, Eric Martz, Itay Mayrose, Shiran Abadi, Elona Erez, Itamar Sela, Kazutaka Katoh, O.C.K.M. Penn and Giddy Landan. Their work appears in journals such as Nucleic Acids Research, Bioinformatics, Genome Biology and Evolution, Frontiers in Immunology and Systematic Biology.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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Haim Ashkenazy

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Haim Ashkenazy

Haim Ashkenazy's Hit Papers

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All Works

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