Ronan Chaligné

4.3k citations

28 papers · 963 indexed · h-index 13

Impact in

Cancer Research top 5%
- Cancer Genomics and Diagnostics
- Cancer-related molecular mechanisms research
Molecular Biology
- Single-cell and spatial transcriptomics
- Epigenetics and DNA Methylation
- RNA modifications and cancer
- CRISPR and Genetic Engineering
- Genomics and Chromatin Dynamics

Papers in ⓘ

Cancer Research 12
- Cancer Genomics and Diagnostics 10
Hematology 5
- Acute Myeloid Leukemia Research 5

Co-authors: Dan A. Landau (9 shared papers)Anna S. Nam (4 shared papers)Édith Heard (3 shared papers)Anne Vincent‐Salomon (2 shared papers)Dana Pe’er (7 shared papers)Noor Sohail (2 shared papers)Roshan Sharma (4 shared papers)Kristen A. Ban (1 shared paper)
Journals: Blood (6 papers)Nature Genetics (3 papers)Cancer Research (2 papers)Nature Communications (2 papers)Nature Biotechnology (2 papers)
Partner nations: United States France Germany

In The Last Decade

Ronan Chaligné

24 papers receiving 957 citations

Peers

Countries citing papers authored by Ronan Chaligné

Since Specialization

Citations

This map shows the geographic impact of Ronan Chaligné's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ronan Chaligné with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ronan Chaligné more than expected).

Fields of papers citing papers by Ronan Chaligné

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ronan Chaligné. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ronan Chaligné. The network helps show where Ronan Chaligné may publish in the future.

Co-authors

The 25 scholars most cited alongside Ronan Chaligné, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Ronan Chaligné Line = papers co-authored together Ronan Chaligné links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 28 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Integrating genetic and non-genetic determinants of cancer evolution by single-cell multi-omics Nature Reviews Genetics ·Anna S. Nam, Ronan Chaligné, Dan A. Landau	2020	262
2	X‐chromosome inactivation in development and cancer FEBS Letters ·Ronan Chaligné, Édith Heard	2014	101
3	The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer Genome Research ·Ronan Chaligné, Tatiana Popova, Marco Antonio Mendoza-Parra, Mohamed-Ashick M. Saleem, David Gentien, Kristen A. Ban, Tristan Piolot, Olivier Leroy, Odette Mariani, Hinrich Gronemeyer, Anne Vincent‐Salomon, Marc‐Henri Stern, Édith Heard	2015	91
4	p63/MT1-MMP axis is required for in situ to invasive transition in basal-like breast cancer Oncogene ·Catalina Lodillinsky, Elvira Infante, Alan Guichard, Ronan Chaligné, Laetitia Fuhrmann, Joanna Cyrta, Marie Irondelle, Emilie Lagoutte, Sophie Vacher, Hélène Bonsang‐Kitzis, Marina A. Glukhova, Fabien Reyal, Ivan Bièche, Anne Vincent‐Salomon, Philippe Chavrier	2015	77
5	SEACells infers transcriptional and epigenomic cellular states from single-cell genomics data Nature Biotechnology ·Sitara Persad, Zi-Ning Choo, Christine Dien, Noor Sohail, Ignas Masilionis, Ronan Chaligné, Tal Nawy, Chrysothemis C. Brown, Roshan Sharma, Itsik Pe’er, Manu Setty, Dana Pe’er	2023	66
6	Single-cell multi-omics of human clonal hematopoiesis reveals that DNMT3A R882 mutations perturb early progenitor states through selective hypomethylation Nature Genetics ·Anna S. Nam, Neville Dusaj, Franco Izzo, Rekha Murali, Robert M. Myers, Tarek H. Mouhieddine, Jesús Alfonso López Sotélo, Salima Benbarche, Michael R. Waarts, Federico Gaiti, Sabrin Tahri, Ross L. Levine, Omar Abdel‐Wahab, Lucy A. Godley, Ronan Chaligné, Irene M. Ghobrial, Dan A. Landau	2022	59
7	Discovery of Candidate DNA Methylation Cancer Driver Genes Cancer Discovery ·Heng Pan, Loïc Renaud, Ronan Chaligné, Johannes Bloehdorn, Eugen Tausch, Daniel Mertens, Anna Maria Fink, Kirsten Fischer, Chao Zhang, Doron Betel, Andreas Gnirke, Marcin Imieliński, Jérôme Moreaux, Michael Hallek, Alexander Meissner, Stephan Stilgenbauer, Catherine J. Wu, Olivier Elemento, Dan A. Landau	2021	53
8	MACHETE identifies interferon-encompassing chromosome 9p21.3 deletions as mediators of immune evasion and metastasis Nature Cancer ·Francisco M. Barriga, Kaloyan M. Tsanov, Yu-Jui Ho, Noor Sohail, Amy Zhang, Timour Baslan, Alexandra Wuest, Isabella Del Priore, Brigita Meškauskaitė, Geulah Livshits, Direna Alonso‐Curbelo, Janelle Simon, Almudena Chaves Perez, Dafna Bar‐Sagi, Christine A. Iacobuzio–Donahue, Faiyaz Notta, Ronan Chaligné, Roshan Sharma, Dana Pe’er, Scott W. Lowe	2022	53
9	Smart-RRBS for single-cell methylome and transcriptome analysis Nature Protocols ·Hongcang Gu, Ayush T. Raman, Xiaoxue Wang, Federico Gaiti, Ronan Chaligné, Arman W. Mohammad, Aleksandra Arczewska, Zachary D. Smith, Dan A. Landau, Martin J. Aryee, Alexander Meissner, Andreas Gnirke	2021	44
10	Distinct metabolic requirements regulate B cell activation and germinal center responses Nature Immunology ·Rahul Sharma, Ryan Smolkin, Priyanka Chowdhury, Keith Conrad Fernandez, Youngjun Kim, Montserrat Cols, William Alread, Wei-Feng Yen, Wei Hu, Zhong-Min Wang, Sara Violante, Ronan Chaligné, Ming O. Li, Justin R. Cross, Jayanta Chaudhuri	2023	39
11	Hypermethylator Phenotype and Ectopic GIP Receptor in GNAS Mutation-Negative Somatotropinomas The Journal of Clinical Endocrinology & Metabolism ·Mirella Hage, Ronan Chaligné, Say Viengchareun, Chiara Villa, Sylvie Salenave, Jérôme Bouligand, Éric Letouzé, Lucie Tosca, Alexandra Rouquette, Gérard Tachdjian, Fabrice Parker, Marc Lombès, André Lacroix, S. Gaillard, Philippe Chanson, Peter Kamenický	2018	29
12	The covariance environment defines cellular niches for spatial inference Nature Biotechnology ·Doron Haviv, Ján Remšík, Mohamed I. Gatie, Catherine Snopkowski, Meril Takizawa, Nathan Pereira, John Bashkin, Stevan Jovanovich, Tal Nawy, Ronan Chaligné, Adrienne Boire, Anna‐Katerina Hadjantonakis, Dana Pe’er	2024	22
13	Ordered chromatin changes and human X chromosome reactivation by cell fusion-mediated pluripotent reprogramming Nature Communications ·Irene Cantone, Hakan Bagci, Dirk Dormann, Gopuraja Dharmalingam, Tatyana B. Nesterova, Neil Brockdorff, Claire Rougeulle, Céline Vallot, Édith Heard, Ronan Chaligné, Matthias Merkenschlager, Amanda G. Fisher	2016	21
14	Systematic Comparison of Pancreatic Ductal Adenocarcinoma Models Identifies a Conserved Highly Plastic Basal Cell State Cancer Research ·Kenneth L. Pitter, Olivera Grbovic-Huezo, Simon Joost, Anupriya Singhal, Melissa Blum, Katherine Wu, Matilda Holm, Alexander Ferrena, Arjun Bhutkar, Anna Hudson, Nicolas Lecomte, Elisa de Stanchina, Ronan Chaligné, Christine A. Iacobuzio–Donahue, Dana Pe’er, Tuomas Tammela	2022	11
15	Application of high-throughput single-nucleus DNA sequencing in pancreatic cancer Nature Communications ·Haochen Zhang, Elias-Ramzey Karnoub, Shigeaki Umeda, Ronan Chaligné, Ignas Masilionis, Caitlin A. McIntyre, Palash Sashittal, Akimasa Hayashi, Amanda Zucker, Katelyn Mullen, Jungeui Hong, Alvin P. Makohon-Moore, Christine A. Iacobuzio–Donahue	2023	11
16	Interferon-γ orchestrates leptomeningeal anti-tumour response Nature ·Ján Remšík, Xinran Tong, Russell Kunes, Minjun Li, Rachel Estrera, Jenna Snyder, Christopher W. Thomson, Ahmed M. Osman, Kiana Chabot, Uğur Sener, Jessica Wilcox, Danielle Isakov, Helen G. Wang, Tejus Bale, Ronan Chaligné, Joseph C. Sun, Chrysothemis C. Brown, Dana Pe’er, Adrienne Boire	2025	8
17	Transcript-specific enrichment enables profiling of rare cell states via single-cell RNA sequencing Nature Genetics ·Tsion Abay, Robert R. Stickels, Meril Takizawa, Benan N. Nalbant, Yu-Hsin Hsieh, Sidney Hwang, Catherine Snopkowski, Kenny Kwok Hei Yu, Zaki Abou-Mrad, Viviane Tabar, Brooke E. Howitt, Leif S. Ludwig, Ronan Chaligné, Ansuman T. Satpathy, Caleb A. Lareau	2025	7
18	A RAS(ON) Multi-Selective Inhibitor Combination Therapy Triggers Long-term Tumor Control through Senescence-Associated Tumor-Immune Equilibrium in Pancreatic Ductal Adenocarcinoma Cancer Discovery ·Caroline Broderick, Riccardo Mezzadra, Exequiel M. Sisso, Felix Mbuga, Rashi Raghulan, Almudena Chaves Perez, Amanda Kulick, Lingyan Jiang, Jingjing Jiang, Yu-Jui Ho, Janelle Simon, Eric Rosiek, Eric Chan, Aveline Filliol, Ronan Chaligné, Elisa de Stanchina, Ximo Pechuan-Jorge, Andrea Schietinger, Mallika Singh, Scott W. Lowe	2025	2
19	Defining molecular circuits of CD8+ T cell responses in tissues during latent viral infection The Journal of Experimental Medicine ·Endi K. Santosa, J Zhang, J. J. Sauter, Mariah Lee, Brandon D. Ng, Sigrun V. Stulz, Meril Takizawa, Simon Grassmann, Orr-El Weizman, Nicholas M. Adams, Ronan Chaligné, Annette Oxenius, Georg Gasteiger, Colleen M. Lau, Joseph C. Sun	2025	1
20	Single-Cell Joint Methylomics and Transcriptomics Define the Epigenetic Evolution and Lineage Histories of Chronic Lymphocytic Leukemia Blood ·Ronan Chaligné, Federico Gaiti, Steven Kothen-Hill, Hongcang Gu, Kevin Huang, Rafael Schulman, Kye-Tae Kim, Evan Biederstedt, Lili Wang, Martin J. Aryee, Andreas Gnirke, Catherine J. Wu, Alexander Meissner, Dan A. Landau	2017	1

About Ronan Chaligné

Ronan Chaligné is a scholar working on Cancer Research, Hematology, Genetics, Molecular Biology and Oncology, having authored 28 papers that have together received 963 indexed citations. Recurring topics across this work include Single-cell and spatial transcriptomics (11 papers), Cancer Genomics and Diagnostics (10 papers), Acute Myeloid Leukemia Research (5 papers), Epigenetics and DNA Methylation (4 papers), Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities (3 papers), Pancreatic and Hepatic Oncology Research (3 papers), Extracellular vesicles in disease (3 papers) and Myeloproliferative Neoplasms: Diagnosis and Treatment (2 papers). The work is most often cited by research in Cancer Research (340 citations), Molecular Biology (656 citations), Oncology (196 citations), Biophysics (37 citations) and Immunology (124 citations). Ronan Chaligné has collaborated with scholars based in United States, France and Germany. Frequent co-authors include Dan A. Landau, Anna S. Nam, Édith Heard, Anne Vincent‐Salomon, Dana Pe’er, Noor Sohail, Roshan Sharma, Kristen A. Ban, Tristan Piolot and Federico Gaiti. Their work appears in journals such as Blood, Nature Genetics, Cancer Research, Nature Communications and Nature Biotechnology.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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