Andreas Gnirke

37.8k total citations · 7 hit papers
62 papers, 17.0k citations indexed

About

Andreas Gnirke is a scholar working on Molecular Biology, Genetics and Plant Science. According to data from OpenAlex, Andreas Gnirke has authored 62 papers receiving a total of 17.0k indexed citations (citations by other indexed papers that have themselves been cited), including 52 papers in Molecular Biology, 10 papers in Genetics and 9 papers in Plant Science. Recurrent topics in Andreas Gnirke's work include Epigenetics and DNA Methylation (25 papers), Genomics and Chromatin Dynamics (19 papers) and RNA modifications and cancer (15 papers). Andreas Gnirke is often cited by papers focused on Epigenetics and DNA Methylation (25 papers), Genomics and Chromatin Dynamics (19 papers) and RNA modifications and cancer (15 papers). Andreas Gnirke collaborates with scholars based in United States, Germany and Netherlands. Andreas Gnirke's co-authors include Alexander Meissner, Hongcang Gu, Eric S. Lander, B Bernstein, Zachary D. Smith, Tarjei S. Mikkelsen, Leonid A. Mirny, Maxim Imakaev, Erez Lieberman-Aiden and Job Dekker and has published in prestigious journals such as Nature, Science and Cell.

In The Last Decade

Andreas Gnirke

62 papers receiving 16.7k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

2009 5.7k citations Erez Lieberman-Aiden, Nynke L. van Berkum et al. Science profile →
Genome-scale DNA methylation maps of pluripotent and differentiated cells

2008 1.9k citations Alexander Meissner, Tarjei S. Mikkelsen et al. profile →
Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes

2015 1.1k citations Suhas S.P. Rao, Neva C. Durand et al. Proceedings of the National Academy of Sciences profile →
Charting a dynamic DNA methylation landscape of the human genome

2013 939 citations Michael J. Ziller, Hongcang Gu et al. profile →
A unique regulatory phase of DNA methylation in the early mammalian embryo

2012 754 citations Zachary D. Smith, Tarjei S. Mikkelsen et al. profile →
Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines

2011 713 citations Christoph Bock, Evangelos Kiskinis et al. profile →
Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling

2011 514 citations Hongcang Gu, Zachary D. Smith et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Andreas Gnirke United States	37	15.4k	3.6k	2.5k	1.2k	735	62	17.0k
Wendy A. Bickmore United Kingdom	71	16.0k 1.0×	3.8k 1.0×	3.2k 1.3×	860 0.7×	759 1.0×	185	17.9k
Ross C. Hardison United States	65	14.1k 0.9×	3.7k 1.0×	2.9k 1.1×	1.4k 1.2×	731 1.0×	236	18.5k
Ryan Lister Australia	52	11.9k 0.8×	2.4k 0.6×	4.6k 1.8×	956 0.8×	522 0.7×	96	15.3k
Felix Krueger United Kingdom	38	10.7k 0.7×	2.8k 0.8×	1.3k 0.5×	1.3k 1.1×	1.3k 1.7×	61	12.3k
Giacomo Cavalli France	59	13.8k 0.9×	2.1k 0.6×	3.9k 1.5×	935 0.8×	337 0.5×	149	15.7k
Dirk Schübeler Switzerland	70	17.8k 1.2×	4.3k 1.2×	1.6k 0.7×	1.8k 1.5×	1.2k 1.7×	113	19.9k
Bryan M. Turner United Kingdom	63	15.8k 1.0×	4.3k 1.2×	2.6k 1.1×	802 0.7×	696 0.9×	167	18.1k
Alec J. Jeffreys United Kingdom	54	8.7k 0.6×	7.2k 2.0×	2.7k 1.1×	1.0k 0.9×	643 0.9×	131	14.5k
Gill Bejerano United States	38	10.3k 0.7×	3.8k 1.0×	1.8k 0.7×	2.0k 1.7×	257 0.3×	93	13.0k
Bradley R. Cairns United States	73	16.1k 1.0×	2.4k 0.7×	2.1k 0.8×	1.2k 1.1×	902 1.2×	141	18.4k

Countries citing papers authored by Andreas Gnirke

Since Specialization

Citations

This map shows the geographic impact of Andreas Gnirke's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Andreas Gnirke with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Andreas Gnirke more than expected).

Fields of papers citing papers by Andreas Gnirke

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Andreas Gnirke. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Andreas Gnirke. The network helps show where Andreas Gnirke may publish in the future.

Co-authorship network of co-authors of Andreas Gnirke

This figure shows the co-authorship network connecting the top 25 collaborators of Andreas Gnirke. A scholar is included among the top collaborators of Andreas Gnirke based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Andreas Gnirke. Andreas Gnirke is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Young, Mark, Timothy J. Straub, Colin J. Worby, et al.. (2024). Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection. Nature Communications. 15(1). 9466–9466. 3 indexed citations

Coelho, Marco A., Terrance Shea, Arman W. Mohammad, et al.. (2024). Comparative genomics of the closely related fungal genera Cryptococcus and Kwoniella reveals karyotype dynamics and suggests evolutionary mechanisms of pathogenesis. PLoS Biology. 22(6). e3002682–e3002682. 4 indexed citations

Durand, Neva C., Namita Mitra, Zane Colaric, et al.. (2023). A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing. PLoS ONE. 18(11). e0294283–e0294283. 2 indexed citations

Pan, Heng, Loïc Renaud, Ronan Chaligné, et al.. (2021). Discovery of Candidate DNA Methylation Cancer Driver Genes. Cancer Discovery. 11(9). 2266–2281. 53 indexed citations

Charlton, Jocelyn, Alexandra L. Mattei, Jing Liao, et al.. (2020). TETs compete with DNMT3 activity in pluripotent cells at thousands of methylated somatic enhancers. Nature Genetics. 52(8). 819–827. 82 indexed citations

Zhang, Yingying, Jocelyn Charlton, Rahul Karnik, et al.. (2018). Targets and genomic constraints of ectopic Dnmt3b expression. eLife. 7. 28 indexed citations

Ziller, Michael J., J. Alberto Ortega, Katharina A. Quinlan, et al.. (2018). Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology. Cell stem cell. 22(4). 559–574.e9. 52 indexed citations

Galonska, Christina, Jocelyn Charlton, Alexandra L. Mattei, et al.. (2018). Genome-wide tracking of dCas9-methyltransferase footprints. Nature Communications. 9(1). 597–597. 114 indexed citations

Chaligné, Ronan, Federico Gaiti, Steven Kothen-Hill, et al.. (2017). Single-Cell Joint Methylomics and Transcriptomics Define the Epigenetic Evolution and Lineage Histories of Chronic Lymphocytic Leukemia. Blood. 130. 55–55. 1 indexed citations

10.

Blumenstiel, Brendan, Matthew DeFelice, Ozge Ceyhan‐Birsoy, et al.. (2016). Development and Validation of a Mass Spectrometry–Based Assay for the Molecular Diagnosis of Mucin-1 Kidney Disease. Journal of Molecular Diagnostics. 18(4). 566–571. 23 indexed citations

11.

Landau, Dan A., Kendell Clement, Hongcang Gu, et al.. (2016). Single Cell Bisulfite Sequencing Defines Epigenetic Diversification in Chronic Lymphocytic Leukemia. Blood. 128(22). 1047–1047. 1 indexed citations

12.

Liao, Jing, Rahul Karnik, Hongcang Gu, et al.. (2015). Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells. Nature Genetics. 47(5). 469–478. 357 indexed citations

13.

Dahlberg, Ann, Sukyung Woo, Colleen Delaney, et al.. (2015). Notch-mediated expansion of cord blood progenitors: maintenance of transcriptional and epigenetic fidelity. Leukemia. 29(9). 1948–1951. 8 indexed citations

14.

Melnikov, Alexandre, Peter Rogov, Li Wang, Andreas Gnirke, & Tarjei S. Mikkelsen. (2014). Comprehensive mutational scanning of a kinase in vivo reveals substrate-dependent fitness landscapes. Nucleic Acids Research. 42(14). e112–e112. 116 indexed citations

15.

Shalek, Alex K., Rahul Satija, Xian Adiconis, et al.. (2013). Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells. RePEc: Research Papers in Economics. 1 indexed citations

16.

Lieberman-Aiden, Erez, Louise Williams, Maxim Imakaev, et al.. (2010). Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome. 1 indexed citations

17.

Berkum, Nynke L. van, Erez Lieberman-Aiden, Louise Williams, et al.. (2010). Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.. Journal of Visualized Experiments. 317 indexed citations

18.

Lieberman-Aiden, Erez, Nynke L. van Berkum, Louise Williams, et al.. (2009). Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome. Science. 326(5950). 289–293. 5700 indexed citations breakdown →

19.

Xie, Xiaohui, Tarjei S. Mikkelsen, Andreas Gnirke, et al.. (2007). Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences. 104(17). 7145–7150. 244 indexed citations

20.

Lauer, Peter, et al.. (1997). Clone–Contig and STS Maps of the Hereditary Hemochromatosis Region on Human Chromosome 6p21.3–p22. Genome Research. 7(5). 457–470. 20 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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