Paul Shannon

11.4k total citations · 3 hit papers
43 papers, 4.8k citations indexed

About

Paul Shannon is a scholar working on Molecular Biology, Genetics and Ophthalmology. According to data from OpenAlex, Paul Shannon has authored 43 papers receiving a total of 4.8k indexed citations (citations by other indexed papers that have themselves been cited), including 29 papers in Molecular Biology, 8 papers in Genetics and 7 papers in Ophthalmology. Recurrent topics in Paul Shannon's work include Bioinformatics and Genomic Networks (11 papers), Ocular Infections and Treatments (7 papers) and Ocular Surface and Contact Lens (7 papers). Paul Shannon is often cited by papers focused on Bioinformatics and Genomic Networks (11 papers), Ocular Infections and Treatments (7 papers) and Ocular Surface and Contact Lens (7 papers). Paul Shannon collaborates with scholars based in United States, Switzerland and Russia. Paul Shannon's co-authors include Leroy Hood, Jay Shendure, Chad D. Huff, Michael J. Bamshad, Nitin S. Baliga, Richard Bonneau, Sarah Ng, Abigail W. Bigham, Karin M. Dent and Ethylin Wang Jabs and has published in prestigious journals such as Science, Proceedings of the National Academy of Sciences and Neuron.

In The Last Decade

Paul Shannon

42 papers receiving 4.7k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Exome sequencing identifies the cause of a mendelian disorder

2009 1.3k citations Chad D. Huff, Paul Shannon et al. profile →
Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing

2010 722 citations Jared C. Roach, Gustavo Glusman et al. Science profile →
Multiscale Analysis of Independent Alzheimer’s Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus

2018 471 citations Ben Readhead, Jean‐Vianney Haure‐Mirande et al. Neuron profile →

Peers

Countries citing papers authored by Paul Shannon

Since Specialization

Citations

This map shows the geographic impact of Paul Shannon's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Paul Shannon with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Paul Shannon more than expected).

Fields of papers citing papers by Paul Shannon

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Paul Shannon. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Paul Shannon. The network helps show where Paul Shannon may publish in the future.

Co-authorship network of co-authors of Paul Shannon

This figure shows the co-authorship network connecting the top 25 collaborators of Paul Shannon. A scholar is included among the top collaborators of Paul Shannon based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Paul Shannon. Paul Shannon is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	cyjShiny: A cytoscape.js R Shiny Widget for network visualization and analysis 2023 ·PLoS ONE ·Augustin Luna, (unknown), Chris Sander, Paul Shannon	4
2	Evaluation of Serratia marcescens Adherence to Contact Lens Materials 2023 ·Microorganisms ·Reed Pifer, (unknown), D. C. Sanders, (unknown), Paul Shannon	4
3	Complete Recovery of Acanthamoeba Motility among Surviving Organisms after Contact Lens Care Disinfection 2023 ·Microorganisms ·(unknown), (unknown), (unknown), Paul Shannon, (unknown)	0
4	Variables Affecting the Recovery of Acanthamoeba Trophozoites 2021 ·Pathogens ·(unknown), (unknown), Paul Shannon, Manal M. Gabriel	6
5	Integrative network modeling reveals mechanisms underlying T cell exhaustion 2020 ·Scientific Reports ·Hamid Bolouri, Mary H. Young, Joshua Beilke, Rebecca Johnson, Brian A. Fox, Lu Huang, (unknown), Christopher M. Hill, Anne-Renée Van der Vuurst de Vries, Paul Shannon, Andrew Dervan, Pallavur V. Sivakumar, Matthew Trotter, Douglas E. Bassett, Alexander V. Ratushny	16
6	Absolute Quantification of Transcription Factors Reveals Principles of Gene Regulation in Erythropoiesis 2020 ·Molecular Cell ·Mark A. Gillespie, Carmen G. Palii, Daniel Sánchez‐Taltavull, Paul Shannon, William J.R. Longabaugh, Damien J. Downes, (unknown), Herbert M. Espinoza, Jim R. Hughes, Nathan D. Price, Theodore J. Perkins, Jeffrey A. Ranish, Marjorie Brand	82
7	Reproducible big data science: A case study in continuous FAIRness 2019 ·PLoS ONE ·Ravi Madduri, Kyle Chard, Mike D’Arcy, Segun Jung, (unknown), Dinanath Sulakhe, Eric W. Deutsch, Cory C. Funk, Ben Heavner, Matthew A. Richards, Paul Shannon, Gustavo Glusman, Nathan D. Price, Carl Kesselman, Ian Foster	23
8	Single-Cell Proteomics Reveal that Quantitative Changes in Co-expressed Lineage-Specific Transcription Factors Determine Cell Fate 2019 ·Cell stem cell ·Carmen G. Palii, Qian Cheng, Mark A. Gillespie, Paul Shannon, Michalina Mazurczyk, Giorgio Napolitani, Nathan D. Price, Jeffrey A. Ranish, Edward Morrissey, Douglas R. Higgs, Marjorie Brand	94
9	Multiscale Analysis of Independent Alzheimer’s Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus breakdown → 2018 ·Neuron ·Ben Readhead, Jean‐Vianney Haure‐Mirande, Cory C. Funk, Matthew A. Richards, Paul Shannon, Vahram Haroutunian, Mary Sano, Winnie S. Liang, Noam D. Beckmann, Nathan D. Price, Eric M. Reiman, Eric E. Schadt, Michelle E. Ehrlich, Sam Gandy, Joel T. Dudley	471
10	Wrangling Phosphoproteomic Data to Elucidate Cancer Signaling Pathways 2013 ·PLoS ONE ·Mark L. Grimes, Wan-Jui Lee, Laurens van der Maaten, Paul Shannon	15
11	Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing breakdown → 2010 ·Science ·Jared C. Roach, Gustavo Glusman, Arian F. A. Smit, Chad D. Huff, Robert Hubley, Paul Shannon, Lee Rowen, Krishna Prasad Pant, Nathan Goodman, Michael J. Bamshad, Jay Shendure, Radoje Drmanac, Lynn B. Jorde, Leroy Hood, David J. Galas	722
12	The Protein Information and Property Explorer 2: Gaggle‐like exploration of biological proteomic data within one webpage 2010 ·PROTEOMICS ·(unknown), Paul Shannon, Mi‐Youn Brusniak, Ulrike Kusebauch, Robert L. Moritz, Ruedi Aebersold	8
13	The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo 2006 ·Genome biology ·Richard Bonneau, David J. Reiss, Paul Shannon, Marc T. Facciotti, Leroy Hood, Nitin S. Baliga, Vésteinn Thórsson	367
14	The Gaggle: An open-source software system for integrating bioinformatics software and data sources 2006 ·BMC Bioinformatics ·Paul Shannon, David J. Reiss, Richard Bonneau, Nitin S. Baliga	119
15	Evidence for the Presence of Disease-Perturbed Networks in Prostate Cancer Cells by Genomic and Proteomic Analyses: A Systems Approach to Disease 2005 ·Cancer Research ·Biaoyang Lin, James T. White, Wei Lu, Tao Xie, Angelita G. Utleg, Xiaowei Yan, Eugene C. Yi, Paul Shannon, Irina Khrebtukova, Paul H. Lange, David R. Goodlett, Daixing Zhou, Thomas J. Vasicek, Leroy Hood	68
16	Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1 2004 ·Genome biology ·Richard Bonneau, Nitin S. Baliga, Eric W. Deutsch, Paul Shannon, Leroy Hood	36
17	Genome sequence of Haloarcula marismortui: A halophilic archaeon from the Dead Sea 2004 ·Genome Research ·Nitin S. Baliga, Richard Bonneau, Marc T. Facciotti, Min Pan, Gustavo Glusman, Eric W. Deutsch, Paul Shannon, Yulun Chiu, Rueyhung Roc Weng, (unknown), (unknown), Shailesh V. Date, Edward M. Marcotte, Leroy Hood, Wailap Victor Ng	236
18	Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach 2002 ·Proceedings of the National Academy of Sciences ·Nitin S. Baliga, Min Pan, Young Ah Goo, Eugene C. Yi, David R. Goodlett, Krassen Dimitrov, Paul Shannon, Ruedi Aebersold, Wailap Victor Ng, Leroy Hood	97
19	GeneClinics: A Hybrid Text/Data Electronic Publishing Model Using XML Applied to Clinical Genetic Testing 2000 ·Journal of the American Medical Informatics Association ·Peter Tarczy‐Hornoch, Paul Shannon, (unknown), (unknown), Roberta A Pagon	18
20	Read This Before You Buy Your Next School Bus. 1981 ·The American school board journal ·Paul Shannon	1

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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