Robert Hubley

14.5k total citations · 4 hit papers
20 papers, 4.0k citations indexed

About

Robert Hubley is a scholar working on Molecular Biology, Plant Science and Genetics. According to data from OpenAlex, Robert Hubley has authored 20 papers receiving a total of 4.0k indexed citations (citations by other indexed papers that have themselves been cited), including 18 papers in Molecular Biology, 13 papers in Plant Science and 6 papers in Genetics. Recurrent topics in Robert Hubley's work include Genomics and Phylogenetic Studies (14 papers), Chromosomal and Genetic Variations (13 papers) and RNA and protein synthesis mechanisms (9 papers). Robert Hubley is often cited by papers focused on Genomics and Phylogenetic Studies (14 papers), Chromosomal and Genetic Variations (13 papers) and RNA and protein synthesis mechanisms (9 papers). Robert Hubley collaborates with scholars based in United States, France and United Kingdom. Robert Hubley's co-authors include Arian F. A. Smit, Jeb Rosen, Cédric Feschotte, Clément Goubert, Andrew G. Clark, Jullien M. Flynn, Travis J. Wheeler, Jody Clements, ROBERT FINN and Thomas A. Jones and has published in prestigious journals such as Science, Proceedings of the National Academy of Sciences and Nucleic Acids Research.

In The Last Decade

Robert Hubley

20 papers receiving 4.0k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

RepeatModeler2 for automated genomic discovery of transposable element families

2020 1.9k citations Jullien M. Flynn, Robert Hubley et al. Proceedings of the National Academy of Sciences profile →
Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing

2010 722 citations Jared C. Roach, Gustavo Glusman et al. Science profile →
The Dfam database of repetitive DNA families

2015 449 citations Robert Hubley, ROBERT FINN et al. Nucleic Acids Research profile →
The Dfam community resource of transposable element families, sequence models, and genome annotations

2021 344 citations Jessica M. Storer, Robert Hubley et al. Mobile DNA profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Robert Hubley United States	14	2.6k	1.7k	1.4k	388	377	20	4.0k
Maria Nattestad United States	11	2.7k 1.1×	1.6k 0.9×	1.1k 0.8×	280 0.7×	444 1.2×	17	3.9k
Muhammad S. Shamim United States	9	4.1k 1.6×	2.4k 1.4×	1.4k 1.0×	488 1.3×	449 1.2×	13	5.6k
Zachary Lewis United States	25	2.3k 0.9×	1.9k 1.1×	1.8k 1.3×	422 1.1×	500 1.3×	53	4.7k
Robert Baertsch United States	14	3.7k 1.4×	1.7k 1.0×	1.3k 0.9×	268 0.7×	322 0.9×	21	5.1k
Oleksiy Kohany United States	11	4.2k 1.6×	3.7k 2.2×	1.2k 0.9×	397 1.0×	401 1.1×	11	5.9k
Jean‐Marc Aury France	35	2.7k 1.0×	1.8k 1.1×	778 0.6×	246 0.6×	595 1.6×	99	4.1k
Genı́s Parra Spain	23	3.4k 1.3×	2.0k 1.2×	1.1k 0.8×	469 1.2×	636 1.7×	34	5.3k
Maja Tarailo‐Graovac Canada	20	2.1k 0.8×	1.1k 0.6×	945 0.7×	206 0.5×	234 0.6×	58	3.3k
Weidong Bao United States	15	2.1k 0.8×	1.6k 0.9×	643 0.5×	246 0.6×	254 0.7×	25	3.0k

Countries citing papers authored by Robert Hubley

Since Specialization

Citations

This map shows the geographic impact of Robert Hubley's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Robert Hubley with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Robert Hubley more than expected).

Fields of papers citing papers by Robert Hubley

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Robert Hubley. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Robert Hubley. The network helps show where Robert Hubley may publish in the future.

Co-authorship network of co-authors of Robert Hubley

This figure shows the co-authorship network connecting the top 25 collaborators of Robert Hubley. A scholar is included among the top collaborators of Robert Hubley based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Robert Hubley. Robert Hubley is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Bonilla, E., et al.. (2023). Survey of COVID-19 Vaccine Attitudes in Predominately Minority Pregnant Women. Southern Medical Journal. 116(8). 677–682. 2 indexed citations

Hubley, Robert, Travis J. Wheeler, & Arian F. A. Smit. (2022). Accuracy of multiple sequence alignment methods in the reconstruction of transposable element families. NAR Genomics and Bioinformatics. 4(2). lqac040–lqac040. 7 indexed citations

Storer, Jessica M., Robert Hubley, Jeb Rosen, & Arian F. A. Smit. (2022). Methodologies for the De novo Discovery of Transposable Element Families. Genes. 13(4). 709–709. 16 indexed citations

Storer, Jessica M., Robert Hubley, Jeb Rosen, Travis J. Wheeler, & Arian F. A. Smit. (2021). The Dfam community resource of transposable element families, sequence models, and genome annotations. Mobile DNA. 12(1). 2–2. 344 indexed citations breakdown →

Storer, Jessica M., Robert Hubley, Jeb Rosen, & Arian F. A. Smit. (2021). Curation Guidelines for de novo Generated Transposable Element Families. Current Protocols. 1(6). e154–e154. 17 indexed citations

Flynn, Jullien M., Robert Hubley, Clément Goubert, et al.. (2020). RepeatModeler2 for automated genomic discovery of transposable element families. Proceedings of the National Academy of Sciences. 117(17). 9451–9457. 1907 indexed citations breakdown →

Konkel, Miriam K., et al.. (2016). Discovery of a new repeat family in the Callithrix jacchus genome. Genome Research. 26(5). 649–659. 8 indexed citations

Hubley, Robert, ROBERT FINN, Jody Clements, et al.. (2015). The Dfam database of repetitive DNA families. Nucleic Acids Research. 44(D1). D81–D89. 449 indexed citations breakdown →

Hoen, Douglas R., Glenn Hickey, Guillaume Bourque, et al.. (2015). A call for benchmarking transposable element annotation methods. Mobile DNA. 6(1). 13–13. 55 indexed citations

10.

Li, Hong, Gustavo Glusman, Hao Hu, et al.. (2014). Relationship Estimation from Whole-Genome Sequence Data. PLoS Genetics. 10(1). e1004144–e1004144. 54 indexed citations

11.

Wheeler, Travis J., Jody Clements, Sean R. Eddy, et al.. (2012). Dfam: a database of repetitive DNA based on profile hidden Markov models. Nucleic Acids Research. 41(D1). D70–D82. 212 indexed citations

12.

Walker, Jerilyn A., Miriam K. Konkel, Brygg Ullmer, et al.. (2012). Orangutan Alu quiescence reveals possible source element: support for ancient backseat drivers. Mobile DNA. 3(1). 8–8. 10 indexed citations

13.

Roach, Jared C., Gustavo Glusman, Robert Hubley, et al.. (2011). Chromosomal Haplotypes by Genetic Phasing of Human Families. The American Journal of Human Genetics. 89(3). 382–397. 45 indexed citations

14.

Roach, Jared C., Gustavo Glusman, Arian F. A. Smit, et al.. (2010). Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing. Science. 328(5978). 636–639. 722 indexed citations breakdown →

15.

Pagán, Heidi J. T., Jeremy D. Smith, Robert Hubley, & David A. Ray. (2010). PiggyBac-ing on a Primate Genome: Novel Elements, Recent Activity and Horizontal Transfer. Genome Biology and Evolution. 2. 293–303. 29 indexed citations

16.

Jiang, Zhaoshi, Robert Hubley, Arian F. A. Smit, & Evan E. Eichler. (2008). DupMasker: A tool for annotating primate segmental duplications. Genome Research. 18(8). 1362–1368. 29 indexed citations

17.

Han, Kyudong, Miriam K. Konkel, Jinchuan Xing, et al.. (2007). Mobile DNA in Old World Monkeys: A Glimpse Through the Rhesus Macaque Genome. Science. 316(5822). 238–240. 76 indexed citations

18.

Hubley, Robert, Eckart Zitzler, & Jared C. Roach. (2003). Evolutionary algorithms for the selection of single nucleotide polymorphisms. BMC Bioinformatics. 4(1). 30–30. 19 indexed citations

19.

Kolker, Eugene, Brian Tjaden, Robert Hubley, Edward N. Trifonov, & Andrew F. Siegel. (2002). Spectral Analysis of Distributions: Finding Periodic Components in Eukaryotic Enzyme Length Data. OMICS A Journal of Integrative Biology. 6(1). 123–130. 5 indexed citations

20.

Hubley, Robert, et al.. (2002). Multiobjective Genetic Marker Selection. 4 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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