Mathieu Almeida

16.1k total citations
30 papers, 556 citations indexed

About

Mathieu Almeida is a scholar working on Molecular Biology, Food Science and Endocrinology. According to data from OpenAlex, Mathieu Almeida has authored 30 papers receiving a total of 556 indexed citations (citations by other indexed papers that have themselves been cited), including 13 papers in Molecular Biology, 9 papers in Food Science and 8 papers in Endocrinology. Recurrent topics in Mathieu Almeida's work include Gut microbiota and health (10 papers), Genomics and Phylogenetic Studies (9 papers) and Salmonella and Campylobacter epidemiology (7 papers). Mathieu Almeida is often cited by papers focused on Gut microbiota and health (10 papers), Genomics and Phylogenetic Studies (9 papers) and Salmonella and Campylobacter epidemiology (7 papers). Mathieu Almeida collaborates with scholars based in France, United States and United Kingdom. Mathieu Almeida's co-authors include Florian Plaza Oñate, Nicolas Pons, O. Colin Stine, Hugo Roume, Benoît Quinquis, Pierre Renault, Emmanuelle Le Chatelier, S. Dusko Ehrlich, Victoria Meslier and Valentin Loux and has published in prestigious journals such as Nature Biotechnology, Bioinformatics and Journal of Bacteriology.

In The Last Decade

Mathieu Almeida

29 papers receiving 544 citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Mathieu Almeida France	14	267	162	124	88	75	30	556
Masafumi Fukuyama Japan	15	279 1.0×	205 1.3×	158 1.3×	95 1.1×	88 1.2×	62	672
Anuradha Ravi Norway	15	283 1.1×	104 0.6×	96 0.8×	100 1.1×	131 1.7×	26	590
Bédis Dridi France	11	473 1.8×	179 1.1×	47 0.4×	92 1.0×	104 1.4×	12	729
Haruyuki Nakayama‐Imaohji Japan	14	241 0.9×	81 0.5×	84 0.7×	48 0.5×	134 1.8×	35	536
Phạm Hùng Vân Vietnam	11	202 0.8×	230 1.4×	77 0.6×	100 1.1×	109 1.5×	19	607
Anna Hanuszkiewicz Germany	14	336 1.3×	81 0.5×	110 0.9×	85 1.0×	38 0.5×	19	878
Jeremy J. Gilbreath United States	12	162 0.6×	91 0.6×	79 0.6×	54 0.6×	122 1.6×	17	514
Floriana Santangelo Italy	13	493 1.8×	111 0.7×	179 1.4×	72 0.8×	177 2.4×	16	884
Matthew R. Hayward Germany	11	516 1.9×	174 1.1×	48 0.4×	56 0.6×	149 2.0×	14	833
Rosario Morales-Espinosa Mexico	19	314 1.2×	139 0.9×	274 2.2×	92 1.0×	127 1.7×	47	944

Countries citing papers authored by Mathieu Almeida

Since Specialization

Citations

This map shows the geographic impact of Mathieu Almeida's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Mathieu Almeida with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Mathieu Almeida more than expected).

Fields of papers citing papers by Mathieu Almeida

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Mathieu Almeida. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Mathieu Almeida. The network helps show where Mathieu Almeida may publish in the future.

Co-authorship network of co-authors of Mathieu Almeida

This figure shows the co-authorship network connecting the top 25 collaborators of Mathieu Almeida. A scholar is included among the top collaborators of Mathieu Almeida based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Mathieu Almeida. Mathieu Almeida is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Benallaoua, Mourad, Anne‐Sophie Alvarez, Nicolas Pons, et al.. (2025). Associations Among Diet, Health, Lifestyle, and Gut Microbiota Composition in the General French Population: Protocol for the Le French Gut – Le Microbiote Français Study. JMIR Research Protocols. 14. e64894–e64894. 1 indexed citations

Thirion, Florence, Florian Plaza Oñate, Franck Gauthier, et al.. (2025). Accurate profiling of microbial communities for shotgun metagenomic sequencing with Meteor2. Microbiome. 13(1). 227–227.

Luan, Tu, Bo Liu, Mathieu Almeida, et al.. (2025). Reference-guided assembly of metagenomes with MetaCompass. Cell Reports Methods. 5(10). 101186–101186. 1 indexed citations

Berland, Magali, Mathieu Almeida, Nicolas Pons, et al.. (2024). Privacy-Preserving Federated Survival Support Vector Machines for Cross-Institutional Time-To-Event Analysis: Algorithm Development and Validation. PubMed. 3. e47652–e47652. 2 indexed citations

Meslier, Victoria, Benoît Quinquis, Kévin Da Silva, et al.. (2022). Benchmarking second and third-generation sequencing platforms for microbial metagenomics. Scientific Data. 9(1). 694–694. 69 indexed citations

Oñate, Florian Plaza, Hugo Roume, & Mathieu Almeida. (2022). Recovery of Metagenome-Assembled Genomes from a Human Fecal Sample with Pacific Biosciences High-Fidelity Sequencing. Microbiology Resource Announcements. 11(6). e0025022–e0025022. 5 indexed citations

Mwaba, John, Amanda K. Debes, Michelo Simuyandi, et al.. (2021). Three transmission events of Vibrio cholerae O1 into Lusaka, Zambia. BMC Infectious Diseases. 21(1). 570–570. 11 indexed citations

Silva, Kévin Da, Nicolas Pons, Magali Berland, et al.. (2021). StrainFLAIR : strain-level profiling of metagenomic samples using variation graphs. PeerJ. 9. e11884–e11884. 4 indexed citations

Fournier, E, Sophie Comtet-Marre, Muriel Thomas, et al.. (2020). Comparative methods for fecal sample storage to preserve gut microbial structure and function in an in vitro model of the human colon. Applied Microbiology and Biotechnology. 104(23). 10233–10247. 45 indexed citations

10.

Hehnly, Christine, Lijun Zhang, Joseph N. Paulson, et al.. (2020). Complete Genome Sequences of the Human Pathogen Paenibacillus thiaminolyticus Mbale and Type Strain P. thiaminolyticus NRRL B-4156. Microbiology Resource Announcements. 9(15). 7 indexed citations

11.

Perin, Jamie, Vanessa Burrowes, Mathieu Almeida, et al.. (2020). A Retrospective Case–Control Study of the Relationship between the Gut Microbiota, Enteropathy, and Child Growth. American Journal of Tropical Medicine and Hygiene. 103(1). 520–527. 14 indexed citations

12.

Oñate, Florian Plaza, Emmanuelle Le Chatelier, Mathieu Almeida, et al.. (2018). MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data. Bioinformatics. 35(9). 1544–1552. 64 indexed citations

13.

Bwire, Godfrey, David A. Sack, Mathieu Almeida, et al.. (2018). Molecular characterization of Vibrio cholerae responsible for cholera epidemics in Uganda by PCR, MLVA and WGS. PLoS neglected tropical diseases. 12(6). e0006492–e0006492. 27 indexed citations

14.

George, Christine Marie, Mahamud‐ur Rashid, Mathieu Almeida, et al.. (2017). Genetic relatedness of Vibrio cholerae isolates within and between households during outbreaks in Dhaka, Bangladesh. BMC Genomics. 18(1). 903–903. 14 indexed citations

15.

Majigo, Mtebe, Fausta Mosha, Janneth Mghamba, et al.. (2017). Genetic Characterization of Vibrio cholerae O1 isolates from outbreaks between 2011 and 2015 in Tanzania. BMC Infectious Diseases. 17(1). 157–157. 18 indexed citations

16.

Garrine, Marcelino, Inácio Mandomando, Delfino Vubil, et al.. (2017). Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing. PLoS neglected tropical diseases. 11(6). e0005671–e0005671. 20 indexed citations

17.

Rashid, Mahamud‐ur, Mathieu Almeida, Andrew S. Azman, et al.. (2016). Comparison of inferred relatedness based on multilocus variable-number tandem-repeat analysis and whole genome sequencing ofVibrio choleraeO1. FEMS Microbiology Letters. 363(12). fnw116–fnw116. 64 indexed citations

18.

Nielsen, Henrik Bjørn, Mathieu Almeida, Agnieszka Sierakowska Juncker, et al.. (2014). A method for identifying metagenomic species and variable genetic elements by exhaustive co-abundance binning. Nature Biotechnology. 1 indexed citations

19.

Almeida, Mathieu, Anne‐Laure Abraham, Simon Rasmussen, et al.. (2014). Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products. BMC Genomics. 15(1). 1101–1101. 57 indexed citations

20.

Malhotra, Sheetal, et al.. (2007). The effect of alcohol swabs and filter straws on reducing contamination of glass ampoules used for neuroaxial injections*. Anaesthesia. 62(3). 286–288. 30 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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