Joshua E. Elias

24.2k citations

97 papers · 16.3k indexed · 9 hit papers · h-index 43

Molecular Biology top 0.2%
Spectroscopy top 0.05%
Cell Biology top 0.5%
Oncology top 1%
Physiology top 2%

Co-authors: Steven P. Gygi Junmin Peng Carson C. Thoreen Wilhelm Haas Sean A. Beausoleil Judit Villén Daniel Schwartz Larry Licklider
Topics: Advanced Proteomics Techniques and Applications (26 papers)Metabolomics and Mass Spectrometry Studies (15 papers)Mass Spectrometry Techniques and Applications (14 papers)
Cited by: Spectroscopy Molecular Biology Cell Biology
Journals: Nature Science Cell
Partner nations: United States United Kingdom Germany

In The Last Decade

Joshua E. Elias

97 papers receiving 16.1k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

2007 3.1k citations Joshua E. Elias, Steven P. Gygi Nature Methods profile →
Evaluation of Multidimensional Chromatography Coupled with Tandem Mass Spectrometry (LC/LC−MS/MS) for Large-Scale Protein Analysis: The Yeast Proteome

2002 1.4k citations Junmin Peng, Joshua E. Elias et al. profile →
A Tissue-Specific Atlas of Mouse Protein Phosphorylation and Expression

2010 1.3k citations Mark P. Jedrychowski, Joshua E. Elias et al. Cell profile →
A proteomics approach to understanding protein ubiquitination

2003 1.3k citations Junmin Peng, Daniel Schwartz et al. Nature Biotechnology profile →
Large-scale characterization of HeLa cell nuclear phosphoproteins

2004 1.2k citations Sean A. Beausoleil, Mark P. Jedrychowski et al. Proceedings of the National Academy of Sciences profile →
Gut-microbiota-targeted diets modulate human immune status

2021 790 citations Hannah C. Wastyk, Gabriela K. Fragiadakis et al. Cell profile →
Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations

2005 590 citations Joshua E. Elias, Wilhelm Haas et al. Nature Methods profile →
Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania

2017 567 citations Erica D. Sonnenburg, Carlos G. Gonzalez et al. profile →
Genetic dissection of Flaviviridae host factors through genome-scale CRISPR screens

2016 320 citations Kavya Swaminathan, Joshua E. Elias et al. profile →

Peers

Countries citing papers authored by Joshua E. Elias

Since Specialization

Citations

This map shows the geographic impact of Joshua E. Elias's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Joshua E. Elias with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Joshua E. Elias more than expected).

Fields of papers citing papers by Joshua E. Elias

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Joshua E. Elias. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Joshua E. Elias. The network helps show where Joshua E. Elias may publish in the future.

Co-authorship network of co-authors of Joshua E. Elias

This figure shows the co-authorship network connecting the top 25 collaborators of Joshua E. Elias. A scholar is included among the top collaborators of Joshua E. Elias based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Joshua E. Elias. Joshua E. Elias is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Parasite and vector circadian clocks mediate efficient malaria transmission 2025 ·Nature Microbiology ·Inês Bento,(unknown),(unknown),(unknown),Eileen Wang,(unknown),Helene Borrmann,(unknown),(unknown),Joseph S. Takahashi,Joshua E. Elias,Maria M. Mota,Filipa Rijo‐Ferreira	2
2	Oral vancomycin treatment suppresses gut trypsin activity and preserves intestinal barrier function during EAE 2023 ·iScience ·(unknown),(unknown),Emma Smith,(unknown),Paola Leone,Gerold Bongers,Carlos G. Gonzalez,(unknown),Joshua E. Elias,Howard L. Weiner,José C. Clemente,Stephanie Tankou	4
3	An efficient urine peptidomics workflow identifies chemically defined dietary gluten peptides from patients with celiac disease 2022 ·Nature Communications ·Brad A. Palanski,(unknown),Lichao Zhang,Andrew J. Hilmer,(unknown),Kavya Swaminathan,Bana Jabrì,Carolina Sousa,Nielsen Fernandez‐Becker,Chaitan Khosla,Joshua E. Elias	29
4	Starvation induces shrinkage of the bacterial cytoplasm 2021 ·Proceedings of the National Academy of Sciences ·Handuo Shi,Corey S. Westfall,(unknown),Pascal D. Odermatt,Sarah E. Anderson,Spencer Cesar,(unknown),(unknown),Carlos G. Gonzalez,Lichao Zhang,Joshua E. Elias,Fred Chang,Kerwyn Casey Huang,Petra Anne Levin	43
5	Repression of CTSG, ELANE and PRTN3-mediated histone H3 proteolytic cleavage promotes monocyte-to-macrophage differentiation 2021 ·Nature Immunology ·Peggie Cheung,Steven Schaffert,Sarah E. Chang,Mai Dvorak,Michele Donato,Claudia Macaubas,Mariko H. Foecke,Tie‐Mei Li,Lichao Zhang,John P. Coan,Grant S. Schulert,Alexei A. Grom,Lauren A. Henderson,Peter A. Nigrović,Joshua E. Elias,Or Gozani,Elizabeth Mellins,Purvesh Khatri,Paul J. Utz,Alex Kuo	45
6	Gut-microbiota-targeted diets modulate human immune statusbreakdown → 2021 ·Cell ·Hannah C. Wastyk,Gabriela K. Fragiadakis,Dalia Perelman,Dylan Dahan,Bryan D. Merrill,Feiqiao Brian Yu,Madeline A. Topf,Carlos G. Gonzalez,William Van Treuren,Shuo Han,Jennifer L. Robinson,Joshua E. Elias,Erica D. Sonnenburg,Christopher D. Gardner,Justin L. Sonnenburg	790
7	Inter-domain dynamics drive cholesterol transport by NPC1 and NPC1L1 proteins 2020 ·eLife ·Piyali Saha,(unknown),(unknown),Nadia Elghobashi‐Meinhardt,Albert Lu,Lichao Zhang,Niclas Olsson,Joshua E. Elias,Suzanne R. Pfeffer	28
8	Ribosomal protein RPL26 is the principal target of UFMylation 2019 ·Proceedings of the National Academy of Sciences ·Christopher P. Walczak,Dara E. Leto,Lichao Zhang,Celeste Riepe,Ryan Muller,Paul A. DaRosa,Nicholas T. Ingolia,Joshua E. Elias,Ron R. Kopito	130
9	Maria-I: A Deep-Learning Approach for Accurate Prediction of MHC Class I Tumor Neoantigen Presentation 2019 ·Blood ·(unknown),Binbin Chen,Michael S. Khodadoust,Niclas Olsson,Mark M. Davis,Joshua E. Elias,Ronald Levy,Russ B. Altman,Ash A. Alizadeh	4
10	Predicting HLA class II antigen presentation through integrated deep learning 2019 ·Nature Biotechnology ·Binbin Chen,Michael S. Khodadoust,Niclas Olsson,Lisa E. Wagar,Ethan Fast,Chih Long Liu,Yagmur Muftuoglu,Brian J. Sworder,Maximilian Diehn,Ronald Levy,Mark M. Davis,Joshua E. Elias,Russ B. Altman,Ash A. Alizadeh	209
11	Minimal Information About an Immuno‐Peptidomics Experiment (MIAIPE) 2018 ·PROTEOMICS ·Jennie R. Lill,Peter A. van Veelen,Stefan Tenzer,Arie Admon,Étienne Caron,Joshua E. Elias,Albert J. R. Heck,Miguel Marcilla,Fabio Marino,Markus Müller,Bjoern Peters,Anthony W. Purcell,Alessandro Sette,Theo Sturm,Nicola Ternette,Juan Antonio Vizcaíno,Michal Bassani‐Sternberg	20
12	Maria: Accurate Prediction of MHC-II Peptide Presentation with Deep-Learning and Lymphoma Patient MHC-II Ligandome 2017 ·Blood ·Binbin Chen,Michael S. Khodadoust,Niclas Olsson,Ethan Fast,Lisa E. Wagar,Chih Long Liu,Mark M. Davis,Ronald Levy,Joshua E. Elias,Russ B. Altman,Ash A. Alizadeh	3
13	A PWWP Domain of Histone-Lysine N-Methyltransferase NSD2 Binds to Dimethylated Lys-36 of Histone H3 and Regulates NSD2 Function at Chromatin 2016 ·Journal of Biological Chemistry ·(unknown),Alex W. Wilkinson,Joshua E. Elias,Or Gozani	72
14	The cyclin D1-CDK4 oncogenic interactome enables identification of potential novel oncogenes and clinical prognosis 2014 ·Cell Cycle ·Siwanon Jirawatnotai,Samanta Sharma,Wojciech Michowski,Bhoom Suktitipat,Yan Geng,John Quackenbush,Joshua E. Elias,Steven P. Gygi,Yaoyu E. Wang,Piotr Siciński	24
15	Calcineurin regulates the yeast synaptojanin Inp53/Sjl3 during membrane stress 2014 ·Molecular Biology of the Cell ·(unknown),Aaron R. Goldman,Joshua E. Elias,Martha Cyert	17
16	Idiopathic Non-Cirrhotic Intrahepatic Portal Hypertension (NCIPH)—Newer Insights into Pathogenesis and Emerging Newer Treatment Options 2014 ·Journal of Clinical and Experimental Hepatology ·Ashish Goel,Joshua E. Elias,C. E. Eapen,Banumathi Ramakrishna,Elwyn Elias	28
17	Optimization and Use of Peptide Mass Measurement Accuracy in Shotgun Proteomics 2006 ·Molecular & Cellular Proteomics ·Wilhelm Haas,Brendan K. Faherty,Scott A. Gerber,Joshua E. Elias,Sean A. Beausoleil,Corey E. Bakalarski,Xue Li,Judit Villén,Steven P. Gygi	233
18	Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigationsbreakdown → 2005 ·Nature Methods ·Joshua E. Elias,Wilhelm Haas,Brendan K. Faherty,Steven P. Gygi	590
19	Large-scale characterization of HeLa cell nuclear phosphoproteinsbreakdown → 2004 ·Proceedings of the National Academy of Sciences ·Sean A. Beausoleil,Mark P. Jedrychowski,Daniel Schwartz,Joshua E. Elias,Judit Villén,Jiaxu Li,Martin A. Cohn,Lewis C. Cantley,Steven P. Gygi	1190
20	A proteomics approach to understanding protein ubiquitinationbreakdown → 2003 ·Nature Biotechnology ·Junmin Peng,Daniel Schwartz,Joshua E. Elias,Carson C. Thoreen,Dongmei Cheng,Gerald Marsischky,Jeroen Roelofs,Daniel Finley,Steven P. Gygi	1302

About Joshua E. Elias

Joshua E. Elias is a scholar working on Spectroscopy, Aging and Molecular Biology, having authored 97 papers that have together received 16.3k indexed citations. Recurring topics across this work include Advanced Proteomics Techniques and Applications (26 papers), Metabolomics and Mass Spectrometry Studies (15 papers) and Mass Spectrometry Techniques and Applications (14 papers). The work is most often cited by research in Spectroscopy (4.6k citations), Molecular Biology (12.2k citations) and Cell Biology (1.8k citations). Joshua E. Elias has collaborated with scholars based in United States, United Kingdom and Germany. Frequent co-authors include Steven P. Gygi, Junmin Peng, Carson C. Thoreen, Wilhelm Haas, Sean A. Beausoleil, Judit Villén, Daniel Schwartz, Larry Licklider, Mark P. Jedrychowski and Brendan K. Faherty. Their work appears in journals such as Nature, Science and Cell.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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