John Sidney

50.0k total citations · 17 hit papers
387 papers, 33.1k citations indexed

About

John Sidney is a scholar working on Immunology, Molecular Biology and Virology. According to data from OpenAlex, John Sidney has authored 387 papers receiving a total of 33.1k indexed citations (citations by other indexed papers that have themselves been cited), including 267 papers in Immunology, 161 papers in Molecular Biology and 78 papers in Virology. Recurrent topics in John Sidney's work include Immunotherapy and Immune Responses (182 papers), vaccines and immunoinformatics approaches (145 papers) and T-cell and B-cell Immunology (121 papers). John Sidney is often cited by papers focused on Immunotherapy and Immune Responses (182 papers), vaccines and immunoinformatics approaches (145 papers) and T-cell and B-cell Immunology (121 papers). John Sidney collaborates with scholars based in United States, Australia and United Kingdom. John Sidney's co-authors include Alessandro Sette, Bjoern Peters, Scott Southwood, Howard M. Grey, Ralph T. Kubo, Carla Oseroff, Robert W. Chesnut, Huynh‐Hoa Bui, Daniela Weiskopf and Ettore Appella and has published in prestigious journals such as Nature, Science and Cell.

In The Last Decade

John Sidney

382 papers receiving 32.5k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

The relationship between class I binding affinity and immunogenicity of potential cytotoxic T cell epitopes.

1994 724 citations Alessandro Sette, Carla Oseroff et al. profile →
A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach

2008 659 citations John Sidney, Alessandro Sette et al. profile →
A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2

2020 652 citations Alba Grifoni, John Sidney et al. Cell Host & Microbe profile →
Predicting population coverage of T-cell epitope-based diagnostics and vaccines

2006 639 citations John Sidney, Alessandro Sette et al. profile →
Several Common HLA-DR Types Share Largely Overlapping Peptide Binding Repertoires

1998 556 citations John Sidney, Howard M. Grey et al. profile →
NetMHCpan, a method for MHC class I binding prediction beyond humans

2008 546 citations Bjoern Peters, John Sidney et al. profile →
Prominent role of secondary anchor residues in peptide binding to HLA-A2.1 molecules

1993 542 citations John Sidney, Howard M. Grey et al. profile →
HLA class I supertypes: a revised and updated classification

2008 542 citations John Sidney, Bjoern Peters et al. BMC Immunology profile →
Peptide binding predictions for HLA DR, DP and DQ molecules

2010 526 citations John Sidney, Alessandro Sette et al. profile →
Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism

1999 520 citations Alessandro Sette, John Sidney profile →
SARS-CoV-2 vaccination induces immunological T cell memory able to cross-recognize variants from Alpha to Omicron

2022 484 citations Elizabeth J. Phillips, S. Mallal et al. profile →
Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8 ⁺ T cells

2013 454 citations Daniela Weiskopf, Michael A. Angelo et al. Proceedings of the National Academy of Sciences profile →
Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction

2017 406 citations Derin B. Keskin, John Sidney et al. profile →
The Outcome of Hepatitis C Virus Infection Is Predicted by Escape Mutations in Epitopes Targeted by Cytotoxic T Lymphocytes

2001 321 citations John Sidney, Alessandro Sette et al. profile →
SARS-CoV-2 human T cell epitopes: Adaptive immune response against COVID-19

2021 204 citations Alba Grifoni, John Sidney et al. Cell Host & Microbe profile →
Functional HPV-specific PD-1+ stem-like CD8 T cells in head and neck cancer

2021 197 citations John Sidney, Alessandro Sette et al. profile →
T Cell Responses to SARS-CoV-2

2023 83 citations Alessandro Sette, John Sidney et al. profile →

Peers

Countries citing papers authored by John Sidney

Since Specialization

Citations

This map shows the geographic impact of John Sidney's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by John Sidney with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites John Sidney more than expected).

Fields of papers citing papers by John Sidney

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by John Sidney. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by John Sidney. The network helps show where John Sidney may publish in the future.

Co-authorship network of co-authors of John Sidney

This figure shows the co-authorship network connecting the top 25 collaborators of John Sidney. A scholar is included among the top collaborators of John Sidney based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with John Sidney. John Sidney is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	PINK1 is a target of T cell responses in Parkinson’s disease 2024 ·Journal of Clinical Investigation ·Gregory P. Williams, (unknown), T. Michaelis, April Frazier, Ngan K. Tran, (unknown), Elizabeth J. Phillips, S. Mallal, Irene Litvan, Jennifer G. Goldman, Roy N. Alcalay, John Sidney, David Sulzer, Alessandro Sette, Cecilia S. Lindestam Arlehamn	9
2	Correlative CD4 and CD8 T-cell immunodominance in humans and mice: Implications for preclinical testing 2023 ·Cellular and Molecular Immunology ·(unknown), John Sidney, Alba Grifoni, Alessandro Sette	5
3	T cell reactivity to Bordetella pertussis is highly diverse regardless of childhood vaccination 2023 ·Cell Host & Microbe ·Ricardo da Silva Antunes, (unknown), Lorenzo Quiambao, Sandeep Kumar Dhanda, Daniel Marrama, (unknown), Eric Wang, (unknown), Aaron Sutherland, Sandra K. Armstrong, Timothy J. Brickman, John Sidney, April Frazier, Tod J. Merkel, Bjoern Peters, Alessandro Sette	9
4	T cell deletional tolerance restricts AQP4 but not MOG CNS autoimmunity 2023 ·Proceedings of the National Academy of Sciences ·Sharon A. Sagan, Zahra Moinfar, Carson E. Moseley, Ravi Dandekar, Collin M. Spencer, A.S. Verkman, Ole Petter Ottersen, Raymond A. Sobel, John Sidney, Alessandro Sette, Mark S. Anderson, Lawrence Steinman, Michael R. Wilson, Joseph J. Sabatino, Scott S. Zamvil	7
5	Identification and Characterization of CD4 ⁺ T Cell Epitopes after Shingrix Vaccination 2020 ·Journal of Virology ·(unknown), Rory D. de Vries, John Sidney, Paul Rubiro, Erin Moore, Elizabeth J. Phillips, S. Mallal, (unknown), Daniela Weiskopf, Alessandro Sette, Alba Grifoni	18
6	Comparison of HLA ligand elution data and binding predictions reveals varying prediction performance for the multiple motifs recognized by HLA‐DQ2.5 2020 ·Immunology ·Zeynep Koşaloğlu, John Sidney, William D. Chronister, Bjoern Peters, Alessandro Sette	7
7	Mapping the MHC Class I–Spliced Immunopeptidome of Cancer Cells 2018 ·Cancer Immunology Research ·Juliane Liepe, John Sidney, (unknown), Alessandro Sette, Michele Mishto	51
8	Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 496 adults from San Diego, California, USA 2018 ·Human Immunology ·(unknown), Alba Grifoni, Daniela Weiskopf, Véronique Schulten, Cecilia S. Lindestam Arlehamn, Michael A. Angelo, John Pham, Shay Leary, John Sidney, David H. Broide, April Frazier, Elizabeth J. Phillips, S. Mallal, Steven J. Mack, Alessandro Sette	11
9	Low HLA binding of diabetes-associated CD8+ T-cell epitopes is increased by post translational modifications 2018 ·BMC Immunology ·John Sidney, José Luis Vela, (unknown), Ravi V. Kolla, Matthias von Herrath, Johnna D. Wesley, Alessandro Sette	29
10	A Case of Human Lassa Virus Infection With Robust Acute T-Cell Activation and Long-Term Virus-Specific T-Cell Responses 2017 ·The Journal of Infectious Diseases ·Anita K. McElroy, Rama Akondy, Jessica R. Harmon, Ali H. Ellebedy, Deborah Cannon, John D. Klena, John Sidney, Alessandro Sette, Aneesh K. Mehta, Colleen S. Kraft, Marshall Lyon, Jay B. Varkey, Bruce S. Ribner, Stuart T. Nichol, Christina F. Spiropoulou	49
11	Citrullination only infrequently impacts peptide binding to HLA class II MHC 2017 ·PLoS ONE ·John Sidney, Stéphane Bécart, Mimi Zhou, Karen E. Duffy, (unknown), Erin Moore, (unknown), Tadimeti S. Rao, Navin Rao, Morten Nielsen, Bjoern Peters, Alessandro Sette	38
12	Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 714 adults from Colombo, Sri Lanka 2017 ·Human Immunology ·Alba Grifoni, Daniela Weiskopf, Cecilia S. Lindestam Arlehamn, Michael A. Angelo, Shay Leary, John Sidney, April Frazier, Elizabeth J. Phillips, S. Mallal, Steven J. Mack, Rashmi Tippalagama, (unknown), Sunil Premawansa, Gayani Premawansa, Ananda Wijewickrama, Aruna Dharshan De Silva, Alessandro Sette	4
13	A large fraction of HLA class I ligands are proteasome-generated spliced peptides 2016 ·Science ·Juliane Liepe, Fabio Marino, John Sidney, Anita Jekő, (unknown), Alessandro Sette, Peter M. Kloetzel, Michael P. H. Stumpf, Albert J. R. Heck, Michele Mishto	270
14	Immunodominance Changes as a Function of the Infecting Dengue Virus Serotype and Primary versus Secondary Infection 2014 ·Journal of Virology ·Daniela Weiskopf, Michael A. Angelo, John Sidney, Bjoern Peters, Sujan Shresta, Alessandro Sette	73
15	Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8 ⁺ T cells breakdown → 2013 ·Proceedings of the National Academy of Sciences ·Daniela Weiskopf, Michael A. Angelo, Elzinandes Leal de Azeredo, John Sidney, Jason Greenbaum, Anira N. Fernando, Anne Broadwater, Ravi V. Kolla, Aruna Dharshan De Silva, Aravinda M. de Silva, (unknown), Benjamin J. Doranz, Howard M. Grey, Sujan Shresta, Bjoern Peters, Alessandro Sette	454
16	Evaluating the Immunogenicity of Protein Drugs by ApplyingIn VitroMHC Binding Data and the Immune Epitope Database and Analysis Resource 2013 ·SHILAP Revista de lepidopterología ·Sinu Paul, Ravi V. Kolla, John Sidney, Daniela Weiskopf, Ward Fleri, Yohan Kim, Bjoern Peters, Alessandro Sette	49
17	Mutated BCR-ABL Generates Immunogenic T-cell Epitopes in CML Patients 2012 ·Clinical Cancer Research ·Ann Cai, Derin B. Keskin, David S. DeLuca, Anselmo Alonso, Wandi Zhang, Guang Lan Zhang, (unknown), Valentina Nardi, Richard M. Stone, Donna Neuberg, John Sidney, Vladimir Brusić, Catherine J. Wu	40
18	Spleen Cells from Young but Not Old Immunized Mice Eradicate Large Established Cancers 2012 ·Clinical Cancer Research ·Karin Schreiber, Ainhoa Arina, Boris Engels, Michael T. Spiotto, John Sidney, Alessandro Sette, Theodore Karrison, Ralph R. Weichselbaum, Donald A. Rowley, Hans Schreiber	21
19	IMMUNOCAT—A Data Management System for Epitope Mapping Studies 2010 ·SHILAP Revista de lepidopterología ·(unknown), (unknown), John Sidney, Alessandro Sette, Bjoern Peters	2
20	Kinetic analysis of a complete poxvirus transcriptome reveals an immediate-early class of genes 2008 ·Proceedings of the National Academy of Sciences ·Erika Assarsson, Jason Greenbaum, Magnus Sundström, Lana Schaffer, Jennifer Hammond, Valérie Pasquetto, Carla Oseroff, R. Curtis Hendrickson, Elliot J. Lefkowitz, David C. Tscharke, John Sidney, Howard M. Grey, Steven R. Head, Bjoern Peters, Alessandro Sette	144

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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