Frederic D. Bushman

124.4k total citations · 29 hit papers
370 papers, 48.6k citations indexed

About

Frederic D. Bushman is a scholar working on Molecular Biology, Infectious Diseases and Virology. According to data from OpenAlex, Frederic D. Bushman has authored 370 papers receiving a total of 48.6k indexed citations (citations by other indexed papers that have themselves been cited), including 219 papers in Molecular Biology, 152 papers in Infectious Diseases and 129 papers in Virology. Recurrent topics in Frederic D. Bushman's work include HIV Research and Treatment (127 papers), HIV/AIDS drug development and treatment (86 papers) and CRISPR and Genetic Engineering (67 papers). Frederic D. Bushman is often cited by papers focused on HIV Research and Treatment (127 papers), HIV/AIDS drug development and treatment (86 papers) and CRISPR and Genetic Engineering (67 papers). Frederic D. Bushman collaborates with scholars based in United States, France and United Kingdom. Frederic D. Bushman's co-authors include Kyle Bittinger, Rob Knight, Gary D. Wu, Christian Hoffmann, James D. Lewis, Hongzhe Li, Charles C. Berry, Robert Craigie, Ronald G. Collman and Gary L. Andersen and has published in prestigious journals such as Nature, Science and New England Journal of Medicine.

In The Last Decade

Frederic D. Bushman

361 papers receiving 47.7k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

2011 4.7k citations Christian Hoffmann, Kyle Bittinger et al. Science profile →
PyNAST: a flexible tool for aligning sequences to a template alignment

2009 2.9k citations Kyle Bittinger, Frederic D. Bushman et al. profile →
HIV-1 Integration in the Human Genome Favors Active Genes and Local Hotspots

2002 1.4k citations Frederic D. Bushman et al. profile →
Bayesian community-wide culture-independent microbial source tracking

2011 1.3k citations Ronald G. Collman, Frederic D. Bushman et al. profile →
High-Fat Diet Determines the Composition of the Murine Gut Microbiome Independently of Obesity

2009 1.2k citations Christian Hoffmann, Scott Sherrill-Mix et al. profile →
Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract

2011 814 citations Kyle Bittinger, Ayannah S. Fitzgerald et al. American Journal of Respiratory and Critical Care Medicine profile →
Retroviral DNA Integration: ASLV, HIV, and MLV Show Distinct Target Site Preferences

2004 737 citations Frederic D. Bushman et al. profile →
Associating microbiome composition with environmental covariates using generalized UniFrac distances

2012 732 citations Kyle Bittinger, Christian Hoffmann et al. profile →
Association Between Breast Milk Bacterial Communities and Establishment and Development of the Infant Gut Microbiome

2017 728 citations Kyle Bittinger, Aubrey Bailey et al. profile →
The human gut virome: Inter-individual variation and dynamic response to diet

2011 674 citations Hongzhe Li, Frederic D. Bushman et al. profile →
Correlation Between Intraluminal Oxygen Gradient and Radial Partitioning of Intestinal Microbiota

2014 642 citations Lindsey Albenberg, Kyle Bittinger et al. profile →
Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn’s Disease

2015 612 citations Robert N. Baldassano, Kyle Bittinger et al. profile →
Innate lymphoid cells regulate CD4+ T-cell responses to intestinal commensal bacteria

2013 598 citations Matthew R. Hepworth, Laurel A. Monticelli et al. profile →
A quantitative assay for HIV DNA integration in vivo

2001 597 citations Frederic D. Bushman et al. profile →
Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents

2013 596 citations Christian Hoffmann, Hongzhe Li et al. profile →
Short pyrosequencing reads suffice for accurate microbial community analysis

2007 551 citations Frederic D. Bushman et al. profile →
A role for LEDGF/p75 in targeting HIV DNA integration

2005 504 citations Christian Hoffmann, Frederic D. Bushman et al. profile →
Decade-Long Safety and Function of Retroviral-Modified Chimeric Antigen Receptor T Cells

2012 502 citations Troy Brady, Steven G. Deeks et al. profile →
Rapid evolution of the human gut virome

2013 429 citations Christel Chehoud, Frederic D. Bushman et al. profile →
Rhythmicity of the intestinal microbiota is regulated by gender and the host circadian clock

2015 408 citations Frederic D. Bushman, Garret A. FitzGerald et al. profile →
Optimizing methods and dodging pitfalls in microbiome research

2017 386 citations Lisa M. Mattei, Scott Sherrill-Mix et al. Microbiome profile →
Comparative metabolomics in vegans and omnivores reveal constraints on diet-dependent gut microbiota metabolite production

2014 381 citations Kyle Bittinger, Christel Chehoud et al. Gut profile →
Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota

2016 377 citations Aoife M. Roche, Scott Sherrill-Mix et al. Microbiome profile →
The human virome: assembly, composition and host interactions

2021 362 citations Guanxiang Liang, Frederic D. Bushman profile →
Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA

2015 308 citations Brendan J. Kelly, Kyle Bittinger et al. profile →
A long-term study of AAV gene therapy in dogs with hemophilia A identifies clonal expansions of transduced liver cells

2020 295 citations J.K. Everett, Aoife M. Roche et al. profile →
Role of dietary fiber in the recovery of the human gut microbiome and its metabolome

2021 201 citations Kyle Bittinger, Hongzhe Li et al. profile →
Rapid manufacturing of non-activated potent CAR T cells

2022 184 citations Shantan Reddy, Frederic D. Bushman et al. profile →
Evaluating the state of the science for adeno-associated virus integration: An integrated perspective

2022 128 citations Frederic D. Bushman et al. Molecular Therapy profile →

Peers

Countries citing papers authored by Frederic D. Bushman

Since Specialization

Citations

This map shows the geographic impact of Frederic D. Bushman's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Frederic D. Bushman with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Frederic D. Bushman more than expected).

Fields of papers citing papers by Frederic D. Bushman

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Frederic D. Bushman. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Frederic D. Bushman. The network helps show where Frederic D. Bushman may publish in the future.

Co-authorship network of co-authors of Frederic D. Bushman

This figure shows the co-authorship network connecting the top 25 collaborators of Frederic D. Bushman. A scholar is included among the top collaborators of Frederic D. Bushman based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Frederic D. Bushman. Frederic D. Bushman is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Within-host influenza viral diversity in the pediatric population as a function of age, vaccine, and health status 2024 ·Virus Evolution ·(unknown), (unknown), Alexander McFarland, (unknown), J.K. Everett, Louise H. Moncla, Frederic D. Bushman, Audrey R. Odom John, Scott E. Hensley	1
2	Comparison of SARS-CoV-2 variants of concern in primary human nasal cultures demonstrates Delta as most cytopathic and Omicron as fastest replicating 2024 ·mBio ·(unknown), (unknown), Li Tan, (unknown), Ranawaka A. P. M. Perera, Scott Sherrill-Mix, Brendan J. Kelly, David M. Renner, Ronald G. Collman, Kyle G. Rodino, (unknown), Frederic D. Bushman, Noam A. Cohen, Susan R. Weiss	10
3	SARS-CoV-2 evolution during prolonged infection in immunocompromised patients 2024 ·mBio ·(unknown), Jevon Graham-Wooten, Ayannah S. Fitzgerald, (unknown), (unknown), J.K. Everett, Kyle G. Rodino, Louise H. Moncla, Brendan J. Kelly, Ronald G. Collman, Frederic D. Bushman	15
4	Effects of Mask Reuse on the Oropharyngeal, Skin, and Mask Microbiome 2023 ·The Journal of Infectious Diseases ·(unknown), Ayannah S. Fitzgerald, (unknown), Jevon Graham-Wooten, Frederic D. Bushman, Ronald G. Collman	3
5	Proviral location affects cognate peptide–induced virus production and immune recognition of HIV-1–infected T cell clones 2023 ·Journal of Clinical Investigation ·Filippo Dragoni, Abena K. Kwaa, (unknown), Rebecca T. Veenhuis, Bezawit A. Woldemeskel, (unknown), Hayley E. Raymond, Arbor G. Dykema, Eileen P. Scully, Amanda Rosecrans, Kellie N. Smith, Frederic D. Bushman, Francesco R. Simonetti, Joel N. Blankson	7
6	The Lung Allograft Microbiome Associates with Pepsin, Inflammation, and Primary Graft Dysfunction 2022 ·American Journal of Respiratory and Critical Care Medicine ·(unknown), Samantha A. Whiteside, Rebecca A. Deek, Áurea Simón‐Soro, Jevon Graham-Wooten, M. Oyster, Melanie Brown, Edward Cantu, Joshua M. Diamond, Hongzhe Li, Jason D. Christie, Frederic D. Bushman, Ronald G. Collman	10
7	Comparative Analysis of Emerging B.1.1.7+E484K SARS-CoV-2 Isolates 2021 ·Open Forum Infectious Diseases ·Ahmed M. Moustafa, (unknown), (unknown), (unknown), Susan Coffin, (unknown), J.K. Everett, Shantan Reddy, (unknown), (unknown), Michael D. Feldman, Kyle G. Rodino, Frederic D. Bushman, Rebecca M. Harris, (unknown), Paul J. Planet	11
8	Dynamics of the Stool Virome in Very Early-Onset Inflammatory Bowel Disease 2020 ·Journal of Crohn s and Colitis ·Guanxiang Liang, Máire Conrad, Judith R. Kelsen, Lyanna R. Kessler, (unknown), Lindsey Albenberg, (unknown), (unknown), (unknown), Jessi Erlichman, Huanjia Zhang, Lisa M. Mattei, Kyle Bittinger, Robert N. Baldassano, Frederic D. Bushman	59
9	Antigen-driven clonal selection shapes the persistence of HIV-1–infected CD4+ T cells in vivo 2020 ·Journal of Clinical Investigation ·Francesco R. Simonetti, Hao Zhang, (unknown), (unknown), Kyle Rhodehouse, Alison L. Hill, Subul Beg, Kevin McCormick, Hayley E. Raymond, Christopher L. Nobles, J.K. Everett, Kyungyoon J. Kwon, Jennifer A. White, Jun Lai, Joseph B. Margolick, Rebecca Hoh, Steven G. Deeks, Frederic D. Bushman, Janet D. Siliciano, Robert F. Siliciano	100
10	Assessment of HIV-1 integration in tissues and subsets across infection stages 2020 ·JCI Insight ·Vincent H. Wu, Christopher L. Nobles, Leticia Kuri-Cervantes, Kevin McCormick, J.K. Everett, Son Nguyen, Perla M. Del Río Estrada, Mauricio González-Navarro, (unknown), Santiago Ávila‐Ríos, Gustavo Reyes‐Terán, Frederic D. Bushman, Michael R. Betts	15
11	Sera from Individuals with Narrowly Focused Influenza Virus Antibodies Rapidly Select Viral Escape Mutations In Ovo 2018 ·Journal of Virology ·(unknown), Kevin D. McCormick, Megan E. Gumina, Joshua G. Petrie, Emily T. Martin, Katherine S. Xue, Jesse D. Bloom, Arnold S. Monto, Frederic D. Bushman, Scott E. Hensley	13
12	Toxin-positive Clostridium difficile latently infect mouse colonies and protect against highly pathogenic C. difficile 2017 ·Gut ·Lucie Etienne‐Mesmin, Benoît Chassaing, Oluwaseyi Adekunle, Lisa M. Mattei, Frederic D. Bushman, Andrew T. Gewirtz	20
13	A Pilot Characterization of the Human Chronobiome 2017 ·Scientific Reports ·Carsten Skarke, Nicholas F. Lahens, Seth D. Rhoades, Amy Campbell, Kyle Bittinger, Aubrey Bailey, Christian Hoffmann, Randal S. Olson, Lihong Chen, Guangrui Yang, Thomas S. Price, Jason H. Moore, Frederic D. Bushman, Casey S. Greene, Gregory R. Grant, Aalim M. Weljie, Garret A. FitzGerald	59
14	Peptidoglycan from the gut microbiota governs the lifespan of circulating phagocytes at homeostasis 2016 ·Blood ·Christopher A. Hergott, Aoife M. Roche, Edwin Tamashiro, Thomas B. Clarke, Aubrey Bailey, Alice Laughlin, Frederic D. Bushman, Jeffrey N. Weiser	92
15	Transfer of Viral Communities between Human Individuals during Fecal Microbiota Transplantation 2016 ·mBio ·Christel Chehoud, (unknown), Young Sun Hwang, Dorottya Nagy‐Szakal, Emily B. Hollister, Ruth Ann Luna, James Versalovic, Richárd Kellermayer, Frederic D. Bushman	87
16	Composition and dynamics of the respiratory tract microbiome in intubated patients 2016 ·Microbiome ·Brendan J. Kelly, Ize Imai, Kyle Bittinger, Alice Laughlin, Barry D. Fuchs, Frederic D. Bushman, Ronald G. Collman	126
17	Virus-helminth coinfection reveals a microbiota-independent mechanism of immunomodulation 2014 ·Science ·Lisa C. Osborne, Laurel A. Monticelli, Timothy J. Nice, Thang V. Pham, Mark C. Siracusa, Matthew R. Hepworth, Vesselin T. Tomov, Dmytro Kobuley, (unknown), Kyle Bittinger, Aubrey Bailey, Alice Laughlin, Jean‐Luc Boucher, E. John Wherry, Frederic D. Bushman, Judith E. Allen, Herbert W. Virgin, David Artis	221
18	Cxcr2 and Cxcl5 regulate the IL-17/G-CSF axis and neutrophil homeostasis in mice 2012 ·Journal of Clinical Investigation ·Junjie Mei, Yuhong Liu, Ning Dai, Christian Hoffmann, Kristin Hudock, Peggy Zhang, Susan H. Guttentag, Jay K. Kolls, Paula M. Oliver, Frederic D. Bushman, G. Scott Worthen	161
19	Distribution of Lentiviral Vector Integration Sites in Mice Following Therapeutic Gene Transfer to Treat β-thalassemia 2011 ·Molecular Therapy ·Keshet Ronen, Olivier Nègre, (unknown), (unknown), Nirav Malani, Maria Denaro, Troy Brady, Floriane Fusil, Béatrix Gillet-Legrand, Kathleen Hehir, Yves Beuzard, Philippe Leboulch, Julian D. Down, Emmanuel Payen, Frederic D. Bushman	55
20	Assessing the potential for AAV vector genotoxicity in a murine model 2010 ·Blood ·Hojun Li, Nirav Malani, (unknown), Alexander Schlachterman, (unknown), (unknown), Rachel Shah, Valder R. Arruda, Federico Mingozzi, J. Fraser Wright, Frederic D. Bushman, Katherine A. High	190

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