Frank Bergmann

7.7k citations

98 papers · 4.1k indexed · h-index 35

Impact in

Oncology top 1%
- Pancreatic and Hepatic Oncology Research
- Cancer Cells and Metastasis
Cancer Research top 5%
- Cancer Genomics and Diagnostics

Papers in

Information Systems and Management 10
- Scientific Computing and Data Management 10
Oncology 28
- Pancreatic and Hepatic Oncology Research 22
- Cancer Cells and Metastasis 4

Co-authors: Herbert M. Sauro Helmut Frieß Markus W. Büchler Peter Schirmacher Jörg Kleeff Iréne Esposito Deepak Chandran Brett G. Olivier
Journals: Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics (16 papers)Bioinformatics (10 papers)Annals of Surgery (4 papers)Archiv für Pathologische Anatomie und Physiologie und für Klinische Medicin (3 papers)Journal of Biotechnology (2 papers)
Partner nations: Germany United States United Kingdom

In The Last Decade

Frank Bergmann

98 papers receiving 4.0k citations

Peers

Countries citing papers authored by Frank Bergmann

Since Specialization

Citations

This map shows the geographic impact of Frank Bergmann's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Frank Bergmann with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Frank Bergmann more than expected).

Fields of papers citing papers by Frank Bergmann

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Frank Bergmann. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Frank Bergmann. The network helps show where Frank Bergmann may publish in the future.

Co-authors

The 25 scholars most cited alongside Frank Bergmann, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Frank Bergmann Line = papers co-authored together Frank Bergmann links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	SBML level 3 package: spatial processes, version 1, release 1 Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics ·James C. Schaff, Anuradha Lakshminarayana, Robert F. Murphy, Frank Bergmann, Akira Funahashi, Devin P. Sullivan, Lucian P. Smith	2023	2
2	BASICO: A simplified Python interface to COPASI The Journal of Open Source Software ·Frank Bergmann	2023	7
3	The pH-dependent lactose metabolism of Lactobacillus delbrueckii subsp. bulgaricus: An integrative view through a mechanistic computational model Journal of Biotechnology ·Tamara A. L. Bendig, Andreas Ulmer, Laura Luzia, Susanne Müller, Sven Sahle, Frank Bergmann, Maren Lösch, Florian Erdemann, Ahmad A. Zeidan, Sebastián N. Mendoza, Bas Teusink, Ralf Takors, Ursula Kummer, Ana Sofia Figueiredo	2023	5
4	The simulation experiment description markup language (SED-ML): language specification for level 1 version 4 Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics ·Lucian P. Smith, Frank Bergmann, Alan Garny, Tomáš Helikar, Jonathan R. Karr, David Nickerson, Herbert M. Sauro, Dagmar Waltemath, Matthias König	2021	8
5	Systems biology graphical notation markup language (SBGNML) version 0.3 Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics ·Frank Bergmann, Tobias Czauderna, Uğur Doğrusöz, Adrien Rougny, Andreas Dräger, Vasundra Touré, Alexander Mazein, Michael L. Blinov, Augustin Luna	2020	13
6	Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1 Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics ·Lucian P. Smith, Stuart Moodie, Frank Bergmann, Colin S. Gillespie, Sarah Keating, Matthias König, Chris J. Myers, Maciek Swat, Darren J. Wilkinson, Michael Hucka	2020	5
7	Robustness of frequency vs. amplitude coding of calcium oscillations during changing temperatures Biophysical Chemistry ·Luis U. Aguilera, Frank Bergmann, Giovanni Dalmasso, Sinan Elmas, Tobias Elsässer, Ruth Großeholz, Pascal Holzheu, Priyata Kalra, Ursula Kummer, Sven Sahle, Nadine Veith	2018	7
8	A Novel MIF Signaling Pathway Drives the Malignant Character of Pancreatic Cancer by Targeting NR3C2 Cancer Research ·Shouhui Yang, Peijun He, Jian Wang, Aaron J. Schetter, Wei Tang, Naotake Funamizu, Katsuhiko Yanaga, Tadashi Uwagawa, Abhay R. Satoskar, Jochen Gaedcke, Markus Bernhardt, Β. Michael Ghadimi, Matthias M. Gaida, Frank Bergmann, Jens Werner, Thomas Ried, Nader Hanna, H. Richard Alexander, S. Perwez Hussain	2016	225
9	Integrating highly quantitative proteomics and genome-scale metabolic modeling to study pH adaptation in the human pathogen Enterococcus faecalis npj Systems Biology and Applications ·Ruth Großeholz, Ching-Chiek Koh, Nadine Veith, Tomas Fiedler, Madlen Strauß, Brett G. Olivier, Ben C. Collins, Olga T. Schubert, Frank Bergmann, Bernd Kreikemeyer, Ruedi Aebersold, Ursula Kummer	2016	26
10	Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics ·Michael Hucka, Frank Bergmann, Andreas Dräger, Stefan Hoops, Sarah Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson	2015	5
11	Discovered on gastrointestinal stromal tumor 1 (DOG1) is expressed in pancreatic centroacinar cells and in solid-pseudopapillary neoplasms—novel evidence for a histogenetic relationship Human Pathology ·Frank Bergmann, Mindaugas Andrulis, Werner Hartwig, Roland Penzel, Matthias M. Gaida, Esther Herpel, Peter Schirmacher, Gunhild Mechtersheimer	2011	38
12	Sequential biphasic changes in claudin1 and claudin4 expression are correlated to colorectal cancer progression and liver metastasis Journal of Cellular and Molecular Medicine ·Rania Georges, Frank Bergmann, Hadjar Hamdi, Michael Zepp, Ergül Eyol, Thomas Hielscher, Martin R. Berger, Hassan Adwan	2011	30
13	Computer-aided design of biological circuits using tinkercell PubMed ·Deepak Chandran, Frank Bergmann, Herbert M. Sauro	2010	26
14	Up-regulation of L1CAM in Pancreatic Duct Cells Is Transforming Growth Factor β1– and Slug-Dependent: Role in Malignant Transformation of Pancreatic Cancer Cancer Research ·Claudia Geismann, Mascha Morscheck, Dorothee Koch, Frank Bergmann, Hendrik Ungefroren, Alexander Arlt, Ming‐Sound Tsao, Max G. Bachem, Peter Altevogt, Bence Sipos, Ulrich R. Fölsch, H. Schäfer, Susanne Sebens Müerköster	2009	85
15	TinkerCell: modular CAD tool for synthetic biology Journal of Biological Engineering ·Deepak Chandran, Frank Bergmann, Herbert M. Sauro	2009	140
16	Pancreatic Neuropathy and Neuropathic Pain—A Comprehensive Pathomorphological Study of 546 Cases Gastroenterology ·Güralp O. Ceyhan, Frank Bergmann, Mustafa Kadıhasanoğlu, Burak Altıntaş, İhsan Ekin Demir, Ulf Hinz, Michael W. Müller, Thomas Giese, Markus W. Büchler, Nathalia A. Giese, Helmut Frieß	2008	278
17	Cannabinoids Reduce Markers of Inflammation and Fibrosis in Pancreatic Stellate Cells PLoS ONE ·Christoph Michalski, Milena Maier, Mert Erkan, Danguole Sauliunaite, Frank Bergmann, Pál Pacher, Sándor Bátkai, Nathalia A. Giese, Thomas Giese, Helmut Frieß, Jörg Kleeff	2008	42
18	Solid type clear cell carcinoma of the pancreas: differential diagnosis of an unusual case and review of the literature Archiv für Pathologische Anatomie und Physiologie und für Klinische Medicin ·Martin Loos, Frank Bergmann, Andrea S. Bauer, Jörg D. Hoheisel, Iréne Esposito, Jörg Kleeff, Peter Schirmacher, Markus W. Büchler, Günter Klöppel, Helmut Friess	2007	6
19	15-Lipoxygenase-1 Production is Lost in Pancreatic Cancer and Overexpression of the Gene Inhibits Tumor Cell Growth Neoplasia ·René Hennig, Timo Kehl, Seema Noor, Xianzhong Ding, Sambasiva M. Rao, Frank Bergmann, Gerhard Fürstenberger, Markus W. Büchler, Helmut Frieß, Peter Krieg, Thomas E. Adrian	2007	51
20	SBW - a modular framework for systems biology Winter Simulation Conference ·Frank Bergmann, Herbert M. Sauro	2006	39

About Frank Bergmann

Frank Bergmann is a scholar working on Information Systems and Management, Oncology, Molecular Biology, Gastroenterology and Transplantation, having authored 98 papers that have together received 4.1k indexed citations. Recurring topics across this work include Gene Regulatory Network Analysis (42 papers), Microbial Metabolic Engineering and Bioproduction (36 papers), Bioinformatics and Genomic Networks (31 papers), Pancreatic and Hepatic Oncology Research (22 papers), Scientific Computing and Data Management (10 papers), Neuroendocrine Tumor Research Advances (10 papers), Pancreatitis Pathology and Treatment (8 papers) and Cancer Cells and Metastasis (4 papers). The work is most often cited by research in Oncology (1.7k citations), Cancer Research (472 citations), Information Systems and Management (192 citations), Molecular Biology (1.8k citations) and Surgery (939 citations). Frank Bergmann has collaborated with scholars based in Germany, United States and United Kingdom. Frequent co-authors include Herbert M. Sauro, Helmut Frieß, Markus W. Büchler, Peter Schirmacher, Jörg Kleeff, Iréne Esposito, Deepak Chandran, Brett G. Olivier, Esther Herpel and C Reiser. Their work appears in journals such as Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics, Bioinformatics, Annals of Surgery, Archiv für Pathologische Anatomie und Physiologie und für Klinische Medicin and Journal of Biotechnology.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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