Stefan Hoops

5.8k total citations · 1 hit paper
50 papers, 3.0k citations indexed

About

Stefan Hoops is a scholar working on Molecular Biology, Immunology and Modeling and Simulation. According to data from OpenAlex, Stefan Hoops has authored 50 papers receiving a total of 3.0k indexed citations (citations by other indexed papers that have themselves been cited), including 24 papers in Molecular Biology, 13 papers in Immunology and 10 papers in Modeling and Simulation. Recurrent topics in Stefan Hoops's work include Gene Regulatory Network Analysis (20 papers), Microbial Metabolic Engineering and Bioproduction (16 papers) and Immune Cell Function and Interaction (11 papers). Stefan Hoops is often cited by papers focused on Gene Regulatory Network Analysis (20 papers), Microbial Metabolic Engineering and Bioproduction (16 papers) and Immune Cell Function and Interaction (11 papers). Stefan Hoops collaborates with scholars based in United States, United Kingdom and Germany. Stefan Hoops's co-authors include Pedro Mendes, Sven Sahle, Ursula Kummer, Ralph Gauges, Jürgen Pahle, Christine Lee, Mudita Singhal, Liang Xu, Raquel Hontecillas and Adria Carbo and has published in prestigious journals such as The Journal of Chemical Physics, Bioinformatics and The Journal of Immunology.

In The Last Decade

Stefan Hoops

49 papers receiving 2.9k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

COPASI—a COmplex PAthway SImulator

2006 1.8k citations Stefan Hoops, Sven Sahle et al. profile →

Peers

Countries citing papers authored by Stefan Hoops

Since Specialization

Citations

This map shows the geographic impact of Stefan Hoops's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Stefan Hoops with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Stefan Hoops more than expected).

Fields of papers citing papers by Stefan Hoops

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Stefan Hoops. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Stefan Hoops. The network helps show where Stefan Hoops may publish in the future.

Co-authorship network of co-authors of Stefan Hoops

This figure shows the co-authorship network connecting the top 25 collaborators of Stefan Hoops. A scholar is included among the top collaborators of Stefan Hoops based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Stefan Hoops. Stefan Hoops is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Role of heterogeneity: National scale data-driven agent-based modeling for the US COVID-19 Scenario Modeling Hub 2024 ·Epidemics ·Jiangzhuo Chen, Parantapa Bhattacharya, Stefan Hoops, Dustin Machi, Abhijin Adiga, Henning Mortveit, Srinivasan Venkatramanan, Bryan Lewis, Madhav Marathe	2
2	Novel multi-cluster workflow system to support real-time HPC-enabled epidemic science: Investigating the impact of vaccine acceptance on COVID-19 spread 2024 ·Journal of Parallel and Distributed Computing ·Parantapa Bhattacharya, Dustin Machi, Jiangzhuo Chen, Stefan Hoops, Bryan Lewis, Henning Mortveit, Srinivasan Venkatramanan, Mandy Wilson, Achla Marathe, Przemyslaw Porebski, Brian Klahn, Joseph Outten, Anil Vullikanti, Dawen Xie, Abhijin Adiga, Shawn T. Brown, Christopher L. Barrett, Madhav Marathe	1
3	Augmenting the Social Vulnerability Index using an agent-based simulation of Hurricane Harvey 2023 ·Computers Environment and Urban Systems ·(unknown), (unknown), (unknown), Henning Mortveit, Stefan Hoops, Anil Vullikanti, Madhav Marathe, Benjamin F. Zaitchik, Julia M. Gohlke, Samarth Swarup	7
4	COVID’s collateral damage: likelihood of measles resurgence in the United States 2022 ·BMC Infectious Diseases ·(unknown), (unknown), (unknown), Achla Marathe, Jiangzhuo Chen, Stefan Hoops, Dustin Machi, Bryan Lewis, Anil Vullikanti	12
5	Medical costs of keeping the US economy open during COVID-19 2020 ·Scientific Reports ·Jiangzhuo Chen, Anil Vullikanti, Stefan Hoops, Henning Mortveit, Bryan Lewis, Srinivasan Venkatramanan, Wen You, Stephen Eubank, Madhav Marathe, Chris Barrett, Achla Marathe	30
6	PlantSimLab - a modeling and simulation web tool for plant biologists 2019 ·BMC Bioinformatics ·(unknown), (unknown), Stefan Hoops, Doaa Altarawy, (unknown), (unknown), Jane Glazebrook, Rachel Hillmer, (unknown), Fumiaki Katagiri, John M. McDowell, Molly Megraw, João Carlos Setúbal, Brett M. Tyler, Reinhard Laubenbacher	5
7	Reconstruction of endosomal organization and function by a combination of ODE and agent-based modeling strategies 2018 ·Biology Direct ·Luis S. Mayorga, Ignacio Cebrián, Meghna Verma, Stefan Hoops, Josep Bassaganya‐Riera	6
8	COPASI and its applications in biotechnology 2017 ·Journal of Biotechnology ·Frank Bergmann, Stefan Hoops, Brian Klahn, Ursula Kummer, Pedro Mendes, Jürgen Pahle, Sven Sahle	62
9	Bistability analyses of CD4+ T follicular helper and regulatory cells during Helicobacter pylori infection 2016 ·Journal of Theoretical Biology ·Andrew Leber, Vida Abedi, Raquel Hontecillas, Monica Viladomiu, Stefan Hoops, Stanca M. Ciupe, John S. Caughman, (unknown), Josep Bassaganya‐Riera	18
10	Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions 2015 ·Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics ·Michael Hucka, Frank Bergmann, Andreas Dräger, Stefan Hoops, Sarah Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson	5
11	Supervised learning methods in modeling of CD4+ T cell heterogeneity 2015 ·BioData Mining ·Pinyi Lu, Vida Abedi, Yongguo Mei, Raquel Hontecillas, Stefan Hoops, Adria Carbo, Josep Bassaganya‐Riera	12
12	Modeling the Regulatory Mechanisms by Which NLRX1 Modulates Innate Immune Responses to Helicobacter pylori Infection 2015 ·PLoS ONE ·Casandra Philipson, Josep Bassaganya‐Riera, Monica Viladomiu, Barbara Kronsteiner, Vida Abedi, Stefan Hoops, Pawel Michalak, Lin Kang, Stephen E. Girardin, Raquel Hontecillas	27
13	Sensitivity Analysis of an ENteric Immunity SImulator (ENISI)-Based Model of Immune Responses to Helicobacter pylori Infection 2015 ·PLoS ONE ·(unknown), Xinwei Deng, Casandra Philipson, Josep Bassaganya‐Riera, Keith Bisset, Adria Carbo, Stephen Eubank, Raquel Hontecillas, Stefan Hoops, Yongguo Mei, Vida Abedi, Madhav Marathe	39
14	Systems Modeling of Interactions between Mucosal Immunity and the Gut Microbiome during Clostridium difficile Infection 2015 ·PLoS ONE ·Andrew Leber, Monica Viladomiu, Raquel Hontecillas, Vida Abedi, Casandra Philipson, Stefan Hoops, (unknown), Josep Bassaganya-Riera	22
15	Computational modeling of heterogeneity and function of CD4+ T cells 2014 ·Frontiers in Cell and Developmental Biology ·Adria Carbo, Raquel Hontecillas, (unknown), Kristin Eden, Yongguo Mei, Stefan Hoops, Josep Bassaganya-Riera	26
16	PPAR{gamma} activation drives Th17 cells into a Treg phenotype 2012 ·The Journal of Immunology ·Adria Carbo, Raquel Hontecillas, Stefan Hoops, Barbara Kronsteiner, Pinyi Lu, Katherine Wendelsdorf, Yongguo Mei, Stephen Eubank, Madhav Marathe, Josep Bassaganya‐Riera	1
17	ENteric Immunity SImulator: A Tool for In Silico Study of Gastroenteric Infections 2012 ·IEEE Transactions on NanoBioscience ·Katherine Wendelsdorf, (unknown), Josep Bassaganya-Riera, Keith Bisset, Stephen Eubank, Raquel Hontecillas, Stefan Hoops, Madhav Marathe	25
18	Condor-COPASI: high-throughput computing for biochemical networks 2012 ·BMC Systems Biology ·(unknown), Stefan Hoops, Pedro Mendes	30
19	Computational Modeling of Biochemical Networks Using COPASI 2009 ·Methods in molecular biology ·Pedro Mendes, Stefan Hoops, Sven Sahle, Ralph Gauges, Joseph O. Dada, Ursula Kummer	142
20	Bounds on the excess charge and the ionization energy for the Hellmann-Weizsacker model 1992 ·French digital mathematics library (Numdam) ·Rafael D. Benguria, Stefan Hoops, Heinz Siedentop	1

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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