Stefan Hoops

5.8k total citations · 1 hit paper
50 papers, 3.0k citations indexed

About

Stefan Hoops is a scholar working on Molecular Biology, Immunology and Modeling and Simulation. According to data from OpenAlex, Stefan Hoops has authored 50 papers receiving a total of 3.0k indexed citations (citations by other indexed papers that have themselves been cited), including 24 papers in Molecular Biology, 13 papers in Immunology and 10 papers in Modeling and Simulation. Recurrent topics in Stefan Hoops's work include Gene Regulatory Network Analysis (20 papers), Microbial Metabolic Engineering and Bioproduction (16 papers) and Immune Cell Function and Interaction (11 papers). Stefan Hoops is often cited by papers focused on Gene Regulatory Network Analysis (20 papers), Microbial Metabolic Engineering and Bioproduction (16 papers) and Immune Cell Function and Interaction (11 papers). Stefan Hoops collaborates with scholars based in United States, United Kingdom and Germany. Stefan Hoops's co-authors include Pedro Mendes, Sven Sahle, Ursula Kummer, Ralph Gauges, Jürgen Pahle, Christine Lee, Mudita Singhal, Liang Xu, Raquel Hontecillas and Adria Carbo and has published in prestigious journals such as The Journal of Chemical Physics, Bioinformatics and The Journal of Immunology.

In The Last Decade

Stefan Hoops

49 papers receiving 2.9k citations

Hit Papers

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What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

COPASI—a COmplex PAthway SImulator

2006 1.8k citations Stefan Hoops, Sven Sahle et al. profile →

Author Peers

Peers are selected by citation overlap in the author's most active subfields. citations · hero ref

Author						Papers	Cites
Stefan Hoops	2.0k	244	239	220	199	50	3.0k
Ursula Kummer	2.5k 1.3×	156 0.6×	233 1.0×	242 1.1×	256 1.3×	78	3.8k
Christine Lee	1.9k 1.0×	216 0.9×	235 1.0×	216 1.0×	169 0.8×	51	3.3k
Ralph E. Parchment	2.3k 1.2×	478 2.0×	360 1.5×	209 0.9×	246 1.2×	184	4.4k
Wenzhe Ma	2.4k 1.2×	171 0.7×	322 1.3×	157 0.7×	159 0.8×	111	3.7k
Mudita Singhal	1.7k 0.8×	82 0.3×	167 0.7×	218 1.0×	148 0.7×	24	2.4k
Junwei Wang	1.4k 0.7×	102 0.4×	141 0.6×	284 1.3×	90 0.5×	227	3.6k
David B. Agus	3.9k 1.9×	693 2.8×	529 2.2×	194 0.9×	243 1.2×	116	8.0k
Jürgen Pahle	1.7k 0.9×	73 0.3×	204 0.9×	217 1.0×	168 0.8×	19	2.4k
Adrienne G. Waks	1.6k 0.8×	319 1.3×	281 1.2×	151 0.7×	387 1.9×	47	4.2k
Yi Cheng	1.1k 0.5×	204 0.8×	97 0.4×	80 0.4×	335 1.7×	210	3.9k

Countries citing papers authored by Stefan Hoops

Since Specialization

Citations

This map shows the geographic impact of Stefan Hoops's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Stefan Hoops with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Stefan Hoops more than expected).

Fields of papers citing papers by Stefan Hoops

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Stefan Hoops. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Stefan Hoops. The network helps show where Stefan Hoops may publish in the future.

Co-authorship network of co-authors of Stefan Hoops

This figure shows the co-authorship network connecting the top 25 collaborators of Stefan Hoops. A scholar is included among the top collaborators of Stefan Hoops based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Stefan Hoops. Stefan Hoops is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Chen, Jiangzhuo, Parantapa Bhattacharya, Stefan Hoops, et al.. (2024). Role of heterogeneity: National scale data-driven agent-based modeling for the US COVID-19 Scenario Modeling Hub. Epidemics. 48. 100779–100779. 2 indexed citations

Bhattacharya, Parantapa, Dustin Machi, Jiangzhuo Chen, et al.. (2024). Novel multi-cluster workflow system to support real-time HPC-enabled epidemic science: Investigating the impact of vaccine acceptance on COVID-19 spread. Journal of Parallel and Distributed Computing. 191. 104899–104899. 1 indexed citations

Mortveit, Henning, Stefan Hoops, Anil Vullikanti, et al.. (2023). Augmenting the Social Vulnerability Index using an agent-based simulation of Hurricane Harvey. Computers Environment and Urban Systems. 105. 102020–102020. 7 indexed citations

Chen, Jiangzhuo, Anil Vullikanti, Joost R. Santos, et al.. (2021). Epidemiological and economic impact of COVID-19 in the US. Scientific Reports. 11(1). 20451–20451. 39 indexed citations

Chen, Jiangzhuo, Anil Vullikanti, Stefan Hoops, et al.. (2020). Medical costs of keeping the US economy open during COVID-19. Scientific Reports. 10(1). 18422–18422. 30 indexed citations

Hoops, Stefan, Doaa Altarawy, Jane Glazebrook, et al.. (2019). PlantSimLab - a modeling and simulation web tool for plant biologists. BMC Bioinformatics. 20(1). 508–508. 5 indexed citations

Palmisano, Alida, Stefan Hoops, Layne T. Watson, et al.. (2019). Efficiently Encoding Complex Biochemical Models with the Multistate Model Builder (MSMB). Methods in molecular biology. 1945. 119–139. 2 indexed citations

Verma, Meghna, Vida Abedi, Raquel Hontecillas, et al.. (2017). Modeling the Mechanisms by Which HIV-Associated Immunosuppression Influences HPV Persistence at the Oral Mucosa. PLoS ONE. 12(1). e0168133–e0168133. 28 indexed citations

Leber, Andrew, Vida Abedi, Raquel Hontecillas, et al.. (2016). Bistability analyses of CD4+ T follicular helper and regulatory cells during Helicobacter pylori infection. Journal of Theoretical Biology. 398. 74–84. 18 indexed citations

10.

Hucka, Michael, Frank Bergmann, Andreas Dräger, et al.. (2015). Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions. Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics. 12(2). 731–901. 5 indexed citations

11.

Deng, Xinwei, Casandra Philipson, Josep Bassaganya‐Riera, et al.. (2015). Sensitivity Analysis of an ENteric Immunity SImulator (ENISI)-Based Model of Immune Responses to Helicobacter pylori Infection. PLoS ONE. 10(9). e0136139–e0136139. 39 indexed citations

12.

Philipson, Casandra, Josep Bassaganya‐Riera, Monica Viladomiu, et al.. (2015). Modeling the Regulatory Mechanisms by Which NLRX1 Modulates Innate Immune Responses to Helicobacter pylori Infection. PLoS ONE. 10(9). e0137839–e0137839. 27 indexed citations

13.

Carbo, Adria, Raquel Hontecillas, Kristin Eden, et al.. (2014). Computational modeling of heterogeneity and function of CD4+ T cells. Frontiers in Cell and Developmental Biology. 2. 31–31. 26 indexed citations

14.

Carbo, Adria, Josep Bassaganya‐Riera, Mireia Pedragosa, et al.. (2013). Predictive Computational Modeling of the Mucosal Immune Responses during Helicobacter pylori Infection. PLoS ONE. 8(9). e73365–e73365. 46 indexed citations

15.

Carbo, Adria, Raquel Hontecillas, Stefan Hoops, et al.. (2012). PPAR{gamma} activation drives Th17 cells into a Treg phenotype. The Journal of Immunology. 188. 1 indexed citations

16.

Wendelsdorf, Katherine, Josep Bassaganya-Riera, Keith Bisset, et al.. (2012). ENteric Immunity SImulator: A Tool for In Silico Study of Gastroenteric Infections. IEEE Transactions on NanoBioscience. 11(3). 273–288. 25 indexed citations

17.

Hoops, Stefan, et al.. (2012). Condor-COPASI: high-throughput computing for biochemical networks. BMC Systems Biology. 6(1). 91–91. 30 indexed citations

18.

Mendes, Pedro, Hanan L. Messiha, Naglis Malys, & Stefan Hoops. (2009). Chapter 22 Enzyme Kinetics and Computational Modeling for Systems Biology. Methods in enzymology on CD-ROM/Methods in enzymology. 467. 583–599. 20 indexed citations

19.

Mendes, Pedro, Stefan Hoops, Sven Sahle, et al.. (2009). Computational Modeling of Biochemical Networks Using COPASI. Methods in molecular biology. 500. 17–59. 142 indexed citations

20.

Benguria, Rafael D., Stefan Hoops, & Heinz Siedentop. (1992). Bounds on the excess charge and the ionization energy for the Hellmann-Weizsacker model. French digital mathematics library (Numdam). 57(1). 47–65. 1 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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